Rmu_sc0001227.1_g000018

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001227.1
OG0000830
Physical Location & Seq
Reverse (-)
59548 .. 61646
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001227.1_g000018.1.cds

Sequence Viewer

Length: 1077 bp
atggattacattctaacgactgtgactacgcaggataatgtcggctgggtgataggctttggtatgttgactgtggtagaggcagtgggcctgtttctatttttactaggaatcaagagatataggaaggaaggggaagggccgcttggaagcgcctttaccaccgtggcgcaagttttcatggcggcagcaaggaagtggcgtgtggatgagacgcttcattctgatattttctacgaggatgagaggagtggatctcatatgggagttcaaccaaagcagaaaactttagctcgaactaaccaattcagatttttggacaaggcaatgattattgacaaccttgatgcatcaaagaacatcagaaacccttggaggctatgctctctaaatcaagtggaagaagtgaagctggttctccgtcttattcccatatggttctgttgcctaatgttctttgcagttcaatcgcaactccatacctacttcacgaaacaaggctccatgatgatcagatccatcggatcccactttcgccttccccccgcatcactccaagccctagttggcatcgtgatagttatcaccgtcccaatctatgaccggattattgtcccaaaagtacgagagttcacaggacatccagcgggcataatggtgcttcaacgaattggggttggcctattcttgtccgtagtcaacatggttgtggcagctctagtggaagccaaaagggttagtgttgcaagagaacatgacctcatggatgatcctgaggcaatagtaccaatgagagtatggtggttgctcccacaatacatactaaccggtatgtcagactcattcacggttgtaggactccaggaattgttctatcatcaaatgccagatccaatgaggagcttgggagctgctgagtacattagcattgttggagttggaagctttgttagcagtttcatcatatcattggtggaaactattagcagaaactctggtgagccgtggttaggtaacaatatcaaccgagcgcaccttgatcatgggcggatccaagtaggagcttgggagggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

358

Amino Acids

40.24

Weight (kDa)

7.79

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 143, 185, 546, 647, 1048
AclWI GGATC 8 cut(s) 262, 510, 519, 532, 764, 884, 1045, 1058
AfaI GTAC 3 cut(s) 624, 786, 920
AfiI CCNNNNNNNGG 1 cut(s) 1010
AgeI ACCGGT 1 cut(s) 827
AgsI TTSAA 3 cut(s) 272, 467, 665
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 7 cut(s) 293, 412, 716, 903, 911, 945, 1064
AluI AGCT 7 cut(s) 293, 412, 716, 903, 911, 945, 1064
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 8 cut(s) 262, 510, 519, 532, 764, 884, 1045, 1058
AoxI GGCC 3 cut(s) 88, 140, 679
ApeKI GCWGC 3 cut(s) 188, 713, 911
AsiGI ACCGGT 1 cut(s) 827
AspLEI GCGC 3 cut(s) 155, 172, 1033
AspS9I GGNCC 2 cut(s) 88, 140
AsuHPI GGTGA 3 cut(s) 61, 577, 1010
AxyI CCTNAGG 1 cut(s) 774
BamHI GGATCC 2 cut(s) 524, 1050
BarI GAAGNNNNNNTAC 2 cut(s) 142, 174
BbvI GCAGC 3 cut(s) 200, 725, 898
BccI CCATC 1 cut(s) 527
BceAI ACGGC 1 cut(s) 988
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BciT130I CCWGG 1 cut(s) 863
BclI TGATCA 2 cut(s) 510, 1039
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 3 cut(s) 107, 563, 719
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 5 cut(s) 143, 186, 189, 714, 912
BlsI GCNGC 5 cut(s) 144, 187, 190, 715, 913
Bme1390I CCNGG 1 cut(s) 863
BmgT120I GGNCC 2 cut(s) 88, 140
BmiI GGNNCC 3 cut(s) 502, 526, 1052
BmrFI CCNGG 1 cut(s) 863
BmsI GCATC 4 cut(s) 337, 359, 557, 579
BplI GAGNNNNNCTC 2 cut(s) 241, 273
BpmI CTGGAG 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 581
BsaJI CCNNGG 3 cut(s) 165, 371, 1004
BsaWI WCCGGW 2 cut(s) 603, 827
Bsc4I CCNNNNNNNGG 1 cut(s) 1010
Bse118I RCCGGY 1 cut(s) 827
Bse21I CCTNAGG 1 cut(s) 774
Bse3DI GCAATG 1 cut(s) 333
Bse8I GATNNNNATC 1 cut(s) 581
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 3 cut(s) 165, 371, 1004
BseGI GGATG 4 cut(s) 214, 247, 640, 772
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 1 cut(s) 1010
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 765, 906
BseRI GAGGAG 2 cut(s) 262, 913
BseXI GCAGC 3 cut(s) 200, 725, 898
BseYI CCCAGC 1 cut(s) 45
BshFI GGCC 3 cut(s) 90, 142, 681
BshTI ACCGGT 1 cut(s) 827
BsiSI CCGG 2 cut(s) 604, 828
BslFI GGGAC 2 cut(s) 575, 599
BslI CCNNNNNNNGG 1 cut(s) 1010
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 2 cut(s) 575, 599
BsnI GGCC 3 cut(s) 90, 142, 681
Bsp143I GATC 8 cut(s) 254, 510, 515, 524, 769, 889, 1039, 1050
BspACI CCGC 5 cut(s) 143, 185, 546, 647, 1048
BspANI GGCC 3 cut(s) 90, 142, 681
BspCNI CTCAG 2 cut(s) 766, 907
BspLI GGNNCC 3 cut(s) 502, 526, 1052
BspPI GGATC 8 cut(s) 262, 510, 519, 532, 764, 884, 1045, 1058
BsrDI GCAATG 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 827
BssAI RCCGGY 1 cut(s) 827
BssECI CCNNGG 3 cut(s) 165, 371, 1004
BssMI GATC 8 cut(s) 254, 510, 515, 524, 769, 889, 1039, 1050
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 5 cut(s) 22, 73, 166, 589, 850
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 2 cut(s) 774, 915
BstDSI CCRYGG 2 cut(s) 165, 1004
BstF5I GGATG 4 cut(s) 214, 247, 640, 772
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 3 cut(s) 155, 172, 1033
BstKTI GATC 8 cut(s) 257, 513, 518, 527, 772, 892, 1042, 1053
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 8 cut(s) 254, 510, 515, 524, 769, 889, 1039, 1050
BstMWI GCNNNNNNNGC 1 cut(s) 951
BstNI CCWGG 1 cut(s) 863
BstSCI CCNGG 1 cut(s) 861
BstV1I GCAGC 3 cut(s) 200, 725, 898
BstX2I RGATCY 5 cut(s) 254, 515, 524, 889, 1050
BstYI RGATCY 5 cut(s) 254, 515, 524, 889, 1050
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 3 cut(s) 90, 142, 681
BtgI CCRYGG 2 cut(s) 165, 1004
BtsCI GGATG 4 cut(s) 214, 247, 640, 772
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 649
CfoI GCGC 3 cut(s) 155, 172, 1033
Cfr10I RCCGGY 1 cut(s) 827
Cfr13I GGNCC 2 cut(s) 88, 140
CseI GACGC 1 cut(s) 223
Csp6I GTAC 3 cut(s) 623, 785, 919
CspAI ACCGGT 1 cut(s) 827
CviAII CATG 6 cut(s) 181, 505, 703, 755, 763, 1043
CviQI GTAC 3 cut(s) 623, 785, 919
DdeI CTNAG 2 cut(s) 774, 915
DpnI GATC 8 cut(s) 256, 512, 517, 526, 771, 891, 1041, 1052
DpnII GATC 8 cut(s) 254, 510, 515, 524, 769, 889, 1039, 1050
EciI GGCGGA 1 cut(s) 1063
Eco130I CCWWGG 1 cut(s) 371
Eco81I CCTNAGG 1 cut(s) 774
EcoRII CCWGG 1 cut(s) 861
EcoT14I CCWWGG 1 cut(s) 371
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 6 cut(s) 184, 508, 706, 758, 766, 1046
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 575, 599
FatI CATG 6 cut(s) 180, 504, 702, 754, 762, 1042
FauI CCCGC 2 cut(s) 553, 640
FauNDI CATATG 2 cut(s) 261, 434
FbaI TGATCA 2 cut(s) 510, 1039
Fnu4HI GCNGC 5 cut(s) 143, 186, 189, 714, 912
FokI GGATG 4 cut(s) 221, 254, 627, 779
Fsp4HI GCNGC 5 cut(s) 143, 186, 189, 714, 912
FspBI CTAG 3 cut(s) 107, 563, 719
GlaI GCGC 3 cut(s) 154, 171, 1032
GluI GCNGC 5 cut(s) 143, 186, 189, 714, 912
GsaI CCCAGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 845
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 3 cut(s) 90, 142, 681
HapII CCGG 2 cut(s) 604, 828
HgaI GACGC 1 cut(s) 223
HhaI GCGC 3 cut(s) 155, 172, 1033
Hin1II CATG 6 cut(s) 184, 508, 706, 758, 766, 1046
Hin6I GCGC 3 cut(s) 153, 170, 1031
HinP1I GCGC 3 cut(s) 153, 170, 1031
HincII GTYRAC 2 cut(s) 69, 700
HindII GTYRAC 2 cut(s) 69, 700
HindIII AAGCTT 1 cut(s) 943
HinfI GANTC 3 cut(s) 111, 839, 858
HpaII CCGG 2 cut(s) 604, 828
HphI GGTGA 3 cut(s) 61, 577, 1010
Hpy166II GTNNAC 3 cut(s) 69, 633, 700
Hpy188I TCNGA 6 cut(s) 226, 311, 365, 515, 524, 838
Hpy188III TCNNGA 4 cut(s) 115, 490, 574, 773
Hpy8I GTNNAC 3 cut(s) 69, 633, 700
HpyAV CCTTC 4 cut(s) 121, 125, 131, 548
HpyCH4III ACNGT 5 cut(s) 22, 73, 166, 589, 850
HpyCH4V TGCA 3 cut(s) 350, 461, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 951
HpyF3I CTNAG 2 cut(s) 774, 915
Hsp92II CATG 6 cut(s) 184, 508, 706, 758, 766, 1046
HspAI GCGC 3 cut(s) 153, 170, 1031
Ksp22I TGATCA 2 cut(s) 510, 1039
Kzo9I GATC 8 cut(s) 254, 510, 515, 524, 769, 889, 1039, 1050
LmnI GCTCC 5 cut(s) 506, 813, 900, 908, 1061
Lsp1109I GCAGC 3 cut(s) 200, 725, 898
LweI GCATC 4 cut(s) 337, 359, 557, 579
MaeI CTAG 3 cut(s) 107, 563, 719
MaeIII GTNAC 2 cut(s) 22, 1013
MalI GATC 8 cut(s) 256, 512, 517, 526, 771, 891, 1041, 1052
MboI GATC 8 cut(s) 254, 510, 515, 524, 769, 889, 1039, 1050
MboII GAAGA 1 cut(s) 413
MflI RGATCY 5 cut(s) 254, 515, 524, 889, 1050
MluCI AATT 3 cut(s) 305, 669, 866
MlyI GAGTC 2 cut(s) 833, 852
MmeI TCCRAC 2 cut(s) 913, 919
MnlI CCTC 8 cut(s) 73, 232, 240, 369, 769, 770, 891, 1063
Mph1103I ATGCAT 1 cut(s) 352
MslI CAYNNNNRTG 2 cut(s) 656, 707
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 2 cut(s) 604, 828
MspR9I CCNGG 1 cut(s) 863
MvaI CCWGG 1 cut(s) 863
MwoI GCNNNNNNNGC 1 cut(s) 951
NdeI CATATG 2 cut(s) 261, 434
NdeII GATC 8 cut(s) 254, 510, 515, 524, 769, 889, 1039, 1050
NlaIII CATG 6 cut(s) 184, 508, 706, 758, 766, 1046
NlaIV GGNNCC 3 cut(s) 502, 526, 1052
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 352
PfeI GAWTC 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 861
PinAI ACCGGT 1 cut(s) 827
PkrI GCNGC 5 cut(s) 144, 187, 190, 715, 913
PleI GAGTC 2 cut(s) 833, 852
PpsI GAGTC 2 cut(s) 833, 852
Psp6I CCWGG 1 cut(s) 861
PspFI CCCAGC 1 cut(s) 45
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 3 cut(s) 502, 526, 1052
PspPI GGNCC 2 cut(s) 88, 140
PsuI RGATCY 5 cut(s) 254, 515, 524, 889, 1050
RsaI GTAC 3 cut(s) 624, 786, 920
RsaNI GTAC 3 cut(s) 623, 785, 919
RseI CAYNNNNRTG 2 cut(s) 656, 707
SatI GCNGC 5 cut(s) 143, 186, 189, 714, 912
Sau3AI GATC 8 cut(s) 254, 510, 515, 524, 769, 889, 1039, 1050
Sau96I GGNCC 2 cut(s) 88, 140
SchI GAGTC 2 cut(s) 833, 852
ScrFI CCNGG 1 cut(s) 863
SfaNI GCATC 4 cut(s) 337, 359, 557, 579
SmiMI CAYNNNNRTG 2 cut(s) 656, 707
Sse9I AATT 3 cut(s) 305, 669, 866
SsiI CCGC 5 cut(s) 143, 185, 546, 647, 1048
SspMI CTAG 3 cut(s) 107, 563, 719
StyD4I CCNGG 1 cut(s) 861
StyI CCWWGG 1 cut(s) 371
TaaI ACNGT 5 cut(s) 22, 73, 166, 589, 850
TaqI TCGA 1 cut(s) 295
TasI AATT 3 cut(s) 305, 669, 866
TatI WGTACW 1 cut(s) 918
TauI GCSGC 2 cut(s) 145, 188
TfiI GAWTC 1 cut(s) 111
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 188, 713, 911
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 169, 209, 949
TspGWI ACGGA 2 cut(s) 410, 682
TspRI CASTG 1 cut(s) 90
XcmI CCANNNNNNNNNTGG 2 cut(s) 563, 795
XspI CTAG 3 cut(s) 107, 563, 719
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.