Rh1BG050800

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000830
Physical Location & Seq
Reverse (-)
6970288 .. 6971466
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG050800.1

Sequence Viewer

Length: 696 bp
ATGATTGAAAATGAGCAGGAGTTATACACCAAGCTCTCCACCCTCCAAAAAATCTCTCGAGGTGGCTGGGATGCTGCTATTTTCATCATTTTTGTAGAGGCAGCAGAGAGGTTTGCGTATTATGGCTTATCTGGTAACCTCATCATATACCTCACAAATTATCTTCACCAGCCCACAGCCATCGCAGCCAAGAACGTCAACATATGGATTGGTGTGTCGTCCCTCTTTGCTCTTCTTGGCGCCATTGTAGCCGATTCTTTCCTGGGTCGGTTCAAGACCATCATTTTATCCACCTCCATTTATTTCATGGGAATGGTTTTACTATGCCTATCCGTCTCCAGTGTTCCTATTCATTATCGTGAAGCAGTGTTCTTTGTTGCGCTTTACATTTTGTCAGTCGGCGAAGGTGGGCACAAGCCTTGCGTCCAAACATTTGCTGCAGATCAGTTTGGTGAGGACACCCCCGATCAGAAAAGGACAAAGAGCTCATTCTTCAACTGGTGGTTCTTGGTGATAGTAATGGCAGGCACTAGTTCAACACTTGTGGTCATCTACATTCAGGTAGACATAAGCGCATTGCTGGTATCAGCAATCTGTCTATGCCCGGATCTATACATTCAACAACCAATGGCGCATTGTCAGATCCTTGGTGGGGATCTACAAAGTTCATGGACACCAATTAATTTTTTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

231

Amino Acids

25.65

Weight (kDa)

5.48

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 91 - 189 8.8e-20 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 564
AclWI GGATC 3 cut(s) 615, 637, 663
AcyI GRCGYC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 652
AgsI TTSAA 5 cut(s) 8, 274, 496, 537, 620
AhlI ACTAGT 1 cut(s) 530
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 2 cut(s) 34, 486
AluI AGCT 2 cut(s) 34, 486
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 3 cut(s) 615, 637, 663
Ama87I CYCGRG 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 74, 101, 185, 437
AseI ATTAAT 1 cut(s) 681
AspLEI GCGC 4 cut(s) 242, 382, 575, 634
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 3 cut(s) 158, 464, 523
AvaI CYCGRG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 414
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 4 cut(s) 61, 113, 197, 424
BccI CCATC 2 cut(s) 188, 287
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 340
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 243
BisI GCNGC 4 cut(s) 75, 102, 186, 438
BlsI GCNGC 4 cut(s) 76, 103, 187, 439
Bme1390I CCNGG 2 cut(s) 263, 605
BmeT110I CYCGRG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 263, 605
BmsI GCATC 1 cut(s) 61
BpmI CTGGAG 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 605
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 262, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse1I ACTGG 2 cut(s) 339, 503
Bse3DI GCAATG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 262, 646
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 575
BseNI ACTGG 2 cut(s) 339, 503
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 4 cut(s) 61, 113, 197, 424
BseYI CCCAGC 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 605
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 1 cut(s) 340
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 414, 488
Bsp143I GATC 5 cut(s) 442, 466, 607, 642, 655
BspLI GGNNCC 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 3 cut(s) 615, 637, 663
BspQI GCTCTTC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 575
BsrI ACTGG 2 cut(s) 339, 503
BssECI CCNNGG 2 cut(s) 262, 646
BssMI GATC 5 cut(s) 442, 466, 607, 642, 655
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 646
Bst2UI CCWGG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 526
BstEII GGTNACC 1 cut(s) 134
BstF5I GGATG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 4 cut(s) 242, 382, 575, 634
BstKTI GATC 5 cut(s) 445, 469, 610, 645, 658
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 5 cut(s) 442, 466, 607, 642, 655
BstMWI GCNNNNNNNGC 2 cut(s) 185, 248
BstNI CCWGG 1 cut(s) 263
BstPI GGTNACC 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 261, 603
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 414
BstV1I GCAGC 4 cut(s) 61, 113, 197, 424
BstX2I RGATCY 3 cut(s) 607, 642, 655
BstYI RGATCY 3 cut(s) 607, 642, 655
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 2 cut(s) 346, 372
Cac8I GCNNGC 1 cut(s) 526
CfoI GCGC 4 cut(s) 242, 382, 575, 634
CseI GACGC 1 cut(s) 412
CspCI CAANNNNNGTGG 2 cut(s) 525, 560
CviAII CATG 2 cut(s) 307, 669
CviJI RGCY 9 cut(s) 34, 66, 126, 172, 179, 188, 251, 418, 486
CviKI_1 RGCY 9 cut(s) 34, 66, 126, 172, 179, 188, 251, 418, 486
DinI GGCGCC 1 cut(s) 241
DpnI GATC 5 cut(s) 444, 468, 609, 644, 657
DpnII GATC 5 cut(s) 442, 466, 607, 642, 655
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 646
Eco24I GRGCYC 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 486
EcoO65I GGTNACC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 488
EgeI GGCGCC 1 cut(s) 241
EheI GGCGCC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 646
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 2 cut(s) 310, 672
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 306, 668
FauNDI CATATG 1 cut(s) 203
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 4 cut(s) 75, 102, 186, 438
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 4 cut(s) 75, 102, 186, 438
FspBI CTAG 1 cut(s) 531
GlaI GCGC 4 cut(s) 241, 381, 574, 633
GluI GCNGC 4 cut(s) 75, 102, 186, 438
GsaI CCCAGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 322
HaeII RGCGCY 1 cut(s) 243
HapII CCGG 1 cut(s) 605
HgaI GACGC 1 cut(s) 412
HhaI GCGC 4 cut(s) 242, 382, 575, 634
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 310, 672
Hin6I GCGC 4 cut(s) 240, 380, 573, 632
HinP1I GCGC 4 cut(s) 240, 380, 573, 632
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 605
HphI GGTGA 3 cut(s) 158, 464, 523
Hpy166II GTNNAC 2 cut(s) 199, 565
Hpy188I TCNGA 2 cut(s) 471, 642
Hpy188III TCNNGA 3 cut(s) 57, 274, 359
Hpy8I GTNNAC 2 cut(s) 199, 565
HpyAV CCTTC 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 248
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 310, 672
HspAI GCGC 4 cut(s) 240, 380, 573, 632
KasI GGCGCC 1 cut(s) 239
Kzo9I GATC 5 cut(s) 442, 466, 607, 642, 655
LguI GCTCTTC 1 cut(s) 237
Lsp1109I GCAGC 4 cut(s) 61, 113, 197, 424
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 134
MalI GATC 5 cut(s) 444, 468, 609, 644, 657
MboI GATC 5 cut(s) 442, 466, 607, 642, 655
MboII GAAGA 3 cut(s) 155, 224, 484
MflI RGATCY 3 cut(s) 607, 642, 655
MhlI GDGCHC 2 cut(s) 414, 488
MluCI AATT 3 cut(s) 157, 678, 682
Mly113I GGCGCC 1 cut(s) 240
MnlI CCTC 9 cut(s) 53, 53, 91, 102, 149, 161, 233, 304, 448
MseI TTAA 1 cut(s) 681
MslI CAYNNNNRTG 2 cut(s) 311, 357
MspI CCGG 1 cut(s) 605
MspR9I CCNGG 2 cut(s) 263, 605
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 185, 248
NarI GGCGCC 1 cut(s) 240
NciI CCSGG 1 cut(s) 605
NdeI CATATG 1 cut(s) 203
NdeII GATC 5 cut(s) 442, 466, 607, 642, 655
NlaIII CATG 2 cut(s) 310, 672
NlaIV GGNNCC 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 4 cut(s) 76, 103, 187, 439
PluTI GGCGCC 1 cut(s) 243
PshBI ATTAAT 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 241
PstI CTGCAG 1 cut(s) 442
PsuI RGATCY 3 cut(s) 607, 642, 655
RseI CAYNNNNRTG 2 cut(s) 311, 357
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 4 cut(s) 75, 102, 186, 438
Sau3AI GATC 5 cut(s) 442, 466, 607, 642, 655
ScrFI CCNGG 2 cut(s) 263, 605
SduI GDGCHC 2 cut(s) 414, 488
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 438
SfoI GGCGCC 1 cut(s) 241
Sfr274I CTCGAG 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 2 cut(s) 311, 357
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 3 cut(s) 157, 678, 682
SspDI GGCGCC 1 cut(s) 239
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 261, 603
StyI CCWWGG 1 cut(s) 646
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 58
TasI AATT 3 cut(s) 157, 678, 682
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TscAI CASTG 2 cut(s) 346, 372
TseI GCWGC 4 cut(s) 74, 101, 185, 437
TspDTI ATGAA 4 cut(s) 73, 295, 341, 657
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 2 cut(s) 346, 372
VspI ATTAAT 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XhoI CTCGAG 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 564
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.