FvH4_7g03012

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000830
Physical Location & Seq
Reverse (-)
3376562 .. 3377646
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03012.t1

Sequence Viewer

Length: 642 bp
ATGGCACAATCTTATTATATATATCTTTATCTCGTGTATGTATTAACAATCAATCTAATAATATCCTGTATTGCAGTTGTAGAGGCAGCGGAGAGGTTTGCATATTATGGCTTGTCTGGTAACCTCATTATGTACCTCACAAATTATCTCCATCAGCCCACAGCCGTCGCGGCCAAGAACGTCAACACCTGGGTGGGTGTGTCATCTCTCTTTGCTCTTCTTGGTGCCATAGTAGCCGATTGCTTCCTTGGTCGGTTCAGGACCATCATTCTCTCCACCTCCATTTATTTCATGGGAATGGTACTACTATGCCTATCGGTCTCGATTGTTCCTAGTCATTATCGTGAAGCGGTGTTCTTCATCGCACTTTACATATTATCTGTTGGGGAAGGTGGGCACCAGCCATGCGTCCAAACCTTTGCCGCCGATCAGTTTGATGAGGACACTGCTGAACAGAAAGAGACAAAGAGCTCATTCTTTAACTGGTGGTATTTAGCTATAGTAGTTGCCGGCACTAGTTCAACACTTGTGGTGATCTACATTCAGGACAATGTCAGCTGGGTCATTGGCTTCGGTATGCTGACAGTGGTTATGGCGTTAGGACTAGCTCTTTTTATTCTTACTAGGGATCAAGAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

214

Amino Acids

23.69

Weight (kDa)

4.84

Isoelectric Point (pI)

23.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 32 - 210 8.1e-09 Major Facilitator Superfamily
PTR2 PF00854 86 - 209 5.7e-30 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 224, 396
AccII CGCG 1 cut(s) 170
AciI CCGC 4 cut(s) 89, 170, 350, 423
AclWI GGATC 1 cut(s) 636
AcoI YGGCCR 1 cut(s) 171
AfaI GTAC 2 cut(s) 134, 303
AgsI TTSAA 1 cut(s) 522
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 1 cut(s) 188
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 4 cut(s) 471, 497, 558, 608
AluI AGCT 4 cut(s) 471, 497, 558, 608
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 2 cut(s) 325, 455
AlwI GGATC 1 cut(s) 636
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 544
AvaII GGWCC 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 399
BanI GGYRCC 2 cut(s) 224, 396
BanII GRGCYC 1 cut(s) 473
BauI CACGAG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 98
BccI CCATC 2 cut(s) 159, 272
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 325, 455
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 4 cut(s) 333, 516, 605, 624
BfmI CTRYAG 1 cut(s) 498
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 3 cut(s) 87, 171, 423
BlsI GCNGC 3 cut(s) 88, 172, 424
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 226, 398
BmrFI CCNGG 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 189, 247
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 488
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 189, 247
BseNI ACTGG 1 cut(s) 488
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 558
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 173
BshNI GGYRCC 2 cut(s) 224, 396
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 1 cut(s) 510
BsmAI GTCTC 2 cut(s) 325, 455
BsnI GGCC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 2 cut(s) 399, 473
Bsp143I GATC 3 cut(s) 427, 534, 628
BspACI CCGC 4 cut(s) 89, 170, 350, 423
BspANI GGCC 1 cut(s) 173
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 226, 398
BspPI GGATC 1 cut(s) 636
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 2 cut(s) 224, 396
BspTNI GGTCTC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 1 cut(s) 488
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 189, 247
BssMI GATC 3 cut(s) 427, 534, 628
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 511
BstEII GGTNACC 1 cut(s) 119
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 3 cut(s) 430, 537, 631
BstMAI GTCTC 2 cut(s) 325, 455
BstMBI GATC 3 cut(s) 427, 534, 628
BstMWI GCNNNNNNNGC 2 cut(s) 170, 233
BstNI CCWGG 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 173
BtgZI GCGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 2 cut(s) 444, 591
Cac8I GCNNGC 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 261
CseI GACGC 1 cut(s) 397
Csp6I GTAC 2 cut(s) 133, 302
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviAII CATG 2 cut(s) 292, 405
CviQI GTAC 2 cut(s) 133, 302
DpnI GATC 3 cut(s) 429, 536, 630
DpnII GATC 3 cut(s) 427, 534, 628
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 471
Eco91I GGTNACC 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 471
EcoO65I GGTNACC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 295, 408
FatI CATG 2 cut(s) 291, 404
Fnu4HI GCNGC 3 cut(s) 87, 171, 423
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 3 cut(s) 87, 171, 423
FspBI CTAG 4 cut(s) 333, 516, 605, 624
GluI GCNGC 3 cut(s) 87, 171, 423
GsaI CCCAGC 1 cut(s) 562
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 510
HgaI GACGC 1 cut(s) 397
Hin1II CATG 2 cut(s) 295, 408
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 510
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 1 cut(s) 184
Hpy188III TCNNGA 5 cut(s) 259, 322, 344, 545, 632
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 74, 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 233
HpySE526I ACGT 1 cut(s) 180
Hsp92II CATG 2 cut(s) 295, 408
KroI GCCGGC 1 cut(s) 509
KroNI GCCGGC 1 cut(s) 511
Kzo9I GATC 3 cut(s) 427, 534, 628
LguI GCTCTTC 1 cut(s) 222
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 4 cut(s) 333, 516, 605, 624
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 119
MalI GATC 3 cut(s) 429, 536, 630
MboI GATC 3 cut(s) 427, 534, 628
MboII GAAGA 2 cut(s) 209, 349
MhlI GDGCHC 2 cut(s) 399, 473
MluCI AATT 1 cut(s) 142
MnlI CCTC 7 cut(s) 76, 87, 134, 146, 289, 433, 628
MroNI GCCGGC 1 cut(s) 509
MseI TTAA 2 cut(s) 44, 480
MslI CAYNNNNRTG 3 cut(s) 191, 296, 342
MspA1I CMGCKG 2 cut(s) 89, 558
MspI CCGG 1 cut(s) 510
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 170, 233
NaeI GCCGGC 1 cut(s) 511
NdeII GATC 3 cut(s) 427, 534, 628
NgoMIV GCCGGC 1 cut(s) 509
NlaIII CATG 2 cut(s) 295, 408
NlaIV GGNNCC 2 cut(s) 226, 398
OliI CACNNNNGTG 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 511
PflFI GACNNNGTC 1 cut(s) 551
PkrI GCNGC 3 cut(s) 88, 172, 424
Psp124BI GAGCTC 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 188
PspEI GGTNACC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 558
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 226, 398
PspPI GGNCC 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 558
RsaI GTAC 2 cut(s) 134, 303
RsaNI GTAC 2 cut(s) 133, 302
RseI CAYNNNNRTG 3 cut(s) 191, 296, 342
SacI GAGCTC 1 cut(s) 473
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 44, 480
SatI GCNGC 3 cut(s) 87, 171, 423
Sau3AI GATC 3 cut(s) 427, 534, 628
Sau96I GGNCC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 190
SduI GDGCHC 2 cut(s) 399, 473
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 3 cut(s) 191, 296, 342
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 1 cut(s) 142
SsiI CCGC 4 cut(s) 89, 170, 350, 423
SspMI CTAG 4 cut(s) 333, 516, 605, 624
SstI GAGCTC 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 323
TaqII GACCGA 1 cut(s) 307
TasI AATT 1 cut(s) 142
TauI GCSGC 2 cut(s) 173, 425
Tru1I TTAA 2 cut(s) 44, 480
Tru9I TTAA 2 cut(s) 44, 480
TscAI CASTG 2 cut(s) 451, 591
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 280, 349
TspRI CASTG 2 cut(s) 451, 591
Tth111I GACNNNGTC 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 4 cut(s) 333, 516, 605, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.