Prupe.2G035400_v2.0.a1

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000830
Physical Location & Seq
Reverse (-)
3798931 .. 3802220
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G035400.1

Sequence Viewer

Length: 1710 bp
ATGGCCGAAAATGGCCTCCAGTTACGCAGCCAGAATCCTTCCACCCACCCCAAACCCTCAAGGGGTGGCTGGAACGCTGCCATTTTCATCATCTTTGTGGAGGTAGCAGAACGATTTGCATTTTATGGCTTGGCTGGAAATCTCATCATGTACCTCACAAATGAACTCCACCAACCTACAGCCATGGCTGCCAAGAACGTCAACTTGTGGATGGGTGTGTCGTCTCTTTTCCCTCTGGTTGGGGCTGTGGTAGCCGATTCCTACCTCGGTCGCTTCAAGACCATCATTTTCTCCTCCTCTATTTATTTCATGGGAATGGTTCTGCTATGCTTATCTGTCTCCGTTGTCCCTCTGCATTATCGCGAAGCCATTTTCTTCGTCTCACTTTACATTTTAGCCGTCGGTGAAGGTGGGCACAAGCCTTGTGTCCAAACCTTCGCCGCCGATCAGTTTGACGAGGACTCGGAGAAGGAGAGAAAGGCCAAGAGCTCATTCTTCAACTGGTGGTATTTAGCGATAGTAATTGCTGGCACTGTTGCCTCACTTGTGGTCATCTACATTCAGGACAACGTGAGCTGGGTTATAGGCTACGGTGTATTGGCCGCGGTCATAGCAGCTGGGATCATATTATTTTTGCTAGGAATTAAAAGTTACCGGAAGCAAGGTCCTCTCGGGAGTCCGTTCACTGCTGTGGCGCAAGTATTTGCCGCAGCGATACGGAAATGGCGCGTGAAGGAGACGCATGATTGGGATGTGTATTATGGAGATGAGAGAAGTGAGACTCATATGGAGGCTCAGCCCAAGCACAAGACTTTGGCTAGGACCAAACAATTCAGGTTTCTGGACAAGGCAATGATCATAGACAACCTTGATGCATCGAGCAAAACGAGGAACCCTTGGAGACTATGCTCTATAAATCAAGTGGAAGAAGTGAAGTTGGTCATCCGTCTTATTCCGATATGGTTGAGTTGCTTAATGTTCAATGTAGTTCAATCTCAACTCCACACCTACTACACCAAGCAAGGTTCCAAGATGAACAGATCCATGGGACCTCATTTCCAGCTTCCCCCAGCGTCGCTTAAAGTCTTCGTCGGCATCACGATCCTAATCACCGTCCCAATCTACGACCGGATTTTCGTCCCAATGGCCCGAAAGCTCTCTGGACACCCCGCAGGCATAACCGTGCTACAAAGAATTGGCGTTGGCCTATTTCTCTCCATCCTCAACGTGGTTGCGGCAGCTCTAGTGGAGGCCAAAAGGGTTAGTGTGGCTAAACAACATGATCTCATGGACAACCCTAAAGCAATCATACCAATTAGGGTTTGGTGGCTCCTCCCACAATACCTAATTTGTGGTTTGTCAGATACATTCGCAGTTGTGGGGCTCCAAGAATTGTTCTATGATCAAATGCCAGAGGGGCTGAGAAGTTTGGGGGCAGCAGCATATATTAGTATTCTAGGAGTTGGAAGCTTCCTTAGTAGTGCCATTATATCTTTGGTGCAGGCGATTAGCTCCAAGTCGGGGGAGGAATGGTTGGGAGACAATCTTAACCGAGCACATCTTGATTACTTCTATTGGGTACTTGCAGGAATGAGTGCTTTGAATTTGTGTGTTTATGTGTGGACTGCAAAGGGTTTTGTGTACAAAAAAGTTGAAGCCCAAAAACCAACTGGGGCAAAAAAAGCAGGCACTAAGGCTGGAGAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

570

Amino Acids

63.2

Weight (kDa)

9.35

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 363, 605, 729
AciI CCGC 6 cut(s) 441, 603, 605, 708, 1170, 1235
AclWI GGATC 3 cut(s) 629, 1035, 1096
AcoI YGGCCR 2 cut(s) 3, 600
AcsI RAATTY 1 cut(s) 1603
AfaI GTAC 3 cut(s) 152, 1581, 1643
AfiI CCNNNNNNNGG 4 cut(s) 62, 239, 1228, 1521
AgsI TTSAA 6 cut(s) 277, 499, 982, 992, 1603, 1655
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 8 cut(s) 489, 576, 617, 1063, 1156, 1241, 1470, 1512
AluI AGCT 8 cut(s) 489, 576, 617, 1063, 1156, 1241, 1470, 1512
Alw21I GWGCWC 2 cut(s) 491, 1558
Alw26I GTCTC 7 cut(s) 228, 343, 385, 731, 773, 895, 1533
AlwI GGATC 3 cut(s) 629, 1035, 1096
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 7 cut(s) 3, 13, 480, 600, 1146, 1204, 1251
ApeKI GCWGC 8 cut(s) 27, 77, 188, 614, 710, 1238, 1436, 1439
ApoI RAATTY 1 cut(s) 1603
ArsI GACNNNNNNTTYG 2 cut(s) 1118, 1150
AspLEI GCGC 2 cut(s) 697, 729
AspS9I GGNCC 4 cut(s) 665, 822, 1049, 1147
AsuHPI GGTGA 2 cut(s) 416, 1102
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 3 cut(s) 665, 822, 1049
BaeGI GKGCMC 1 cut(s) 417
BanII GRGCYC 2 cut(s) 491, 1386
BbsI GAAGAC 1 cut(s) 1078
Bbv12I GWGCWC 2 cut(s) 491, 1558
BbvI GCAGC 8 cut(s) 39, 64, 175, 626, 722, 1250, 1448, 1451
BccI CCATC 3 cut(s) 205, 290, 1226
BceAI ACGGC 1 cut(s) 383
BclI TGATCA 2 cut(s) 855, 1402
BcoDI GTCTC 7 cut(s) 228, 343, 385, 731, 773, 895, 1533
BfaI CTAG 4 cut(s) 638, 819, 1244, 1457
BfmI CTRYAG 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 1417
BlpI GCTNAGC 1 cut(s) 795
Bme18I GGWCC 3 cut(s) 665, 822, 1049
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 4 cut(s) 665, 822, 1049, 1147
BmiI GGNNCC 5 cut(s) 893, 1027, 1050, 1331, 1385
BmrI ACTGGG 1 cut(s) 1680
BmsI GCATC 3 cut(s) 862, 884, 1104
BmuI ACTGGG 1 cut(s) 1680
BpiI GAAGAC 1 cut(s) 1078
Bpu1102I GCTNAGC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 1106
BsaJI CCNNGG 5 cut(s) 183, 265, 603, 896, 1044
BsaWI WCCGGW 2 cut(s) 654, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 1517, 1547
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 239, 1228, 1521
Bse1I ACTGG 3 cut(s) 19, 506, 1675
Bse3DI GCAATG 1 cut(s) 858
Bse8I GATNNNNATC 1 cut(s) 1106
BseDI CCNNGG 5 cut(s) 183, 265, 603, 896, 1044
BseGI GGATG 4 cut(s) 216, 757, 942, 1218
BseJI GATNNNNATC 1 cut(s) 1106
BseLI CCNNNNNNNGG 4 cut(s) 62, 239, 1228, 1521
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 2 cut(s) 809, 1412
BseNI ACTGG 3 cut(s) 19, 506, 1675
BseRI GAGGAG 3 cut(s) 283, 286, 1322
BseSI GKGCMC 1 cut(s) 417
BseXI GCAGC 8 cut(s) 39, 64, 175, 626, 722, 1250, 1448, 1451
BseYI CCCAGC 3 cut(s) 576, 617, 1069
BsgI GTGCAG 1 cut(s) 1520
Bsh1236I CGCG 3 cut(s) 363, 605, 729
Bsh1285I CGRYCG 2 cut(s) 271, 1129
BshFI GGCC 7 cut(s) 5, 15, 482, 602, 1148, 1206, 1253
BsiEI CGRYCG 2 cut(s) 271, 1129
BsiHKAI GWGCWC 2 cut(s) 491, 1558
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 2 cut(s) 655, 1129
BslFI GGGAC 4 cut(s) 332, 1062, 1100, 1124
BslI CCNNNNNNNGG 4 cut(s) 62, 239, 1228, 1521
BsmAI GTCTC 7 cut(s) 228, 343, 385, 731, 773, 895, 1533
BsmBI CGTCTC 3 cut(s) 228, 385, 731
BsmFI GGGAC 4 cut(s) 332, 1062, 1100, 1124
BsnI GGCC 7 cut(s) 5, 15, 482, 602, 1148, 1206, 1253
BsoBI CYCGRG 1 cut(s) 671
Bsp1286I GDGCHC 4 cut(s) 417, 491, 1386, 1558
Bsp1407I TGTACA 1 cut(s) 1641
Bsp143I GATC 7 cut(s) 445, 621, 855, 1040, 1101, 1282, 1402
Bsp1720I GCTNAGC 1 cut(s) 795
Bsp19I CCATGG 2 cut(s) 183, 1044
Bsp68I TCGCGA 1 cut(s) 363
BspACI CCGC 6 cut(s) 441, 603, 605, 708, 1170, 1235
BspANI GGCC 7 cut(s) 5, 15, 482, 602, 1148, 1206, 1253
BspCNI CTCAG 2 cut(s) 808, 1413
BspFNI CGCG 3 cut(s) 363, 605, 729
BspLI GGNNCC 5 cut(s) 893, 1027, 1050, 1331, 1385
BspPI GGATC 3 cut(s) 629, 1035, 1096
BsrDI GCAATG 1 cut(s) 858
BsrGI TGTACA 1 cut(s) 1641
BsrI ACTGG 3 cut(s) 19, 506, 1675
BssECI CCNNGG 5 cut(s) 183, 265, 603, 896, 1044
BssMI GATC 7 cut(s) 445, 621, 855, 1040, 1101, 1282, 1402
BssT1I CCWWGG 3 cut(s) 183, 896, 1044
Bst4CI ACNGT 4 cut(s) 535, 593, 1114, 1183
BstAUI TGTACA 1 cut(s) 1641
BstC8I GCNNGC 4 cut(s) 529, 1174, 1503, 1687
BstDEI CTNAG 4 cut(s) 795, 1421, 1475, 1692
BstDSI CCRYGG 3 cut(s) 183, 603, 1044
BstF5I GGATG 4 cut(s) 216, 757, 942, 1218
BstFNI CGCG 3 cut(s) 363, 605, 729
BstHHI GCGC 2 cut(s) 697, 729
BstKTI GATC 7 cut(s) 448, 624, 858, 1043, 1104, 1285, 1405
BstMAI GTCTC 7 cut(s) 228, 343, 385, 731, 773, 895, 1533
BstMBI GATC 7 cut(s) 445, 621, 855, 1040, 1101, 1282, 1402
BstMCI CGRYCG 2 cut(s) 271, 1129
BstMWI GCNNNNNNNGC 5 cut(s) 188, 251, 611, 1417, 1682
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 417
BstUI CGCG 3 cut(s) 363, 605, 729
BstV1I GCAGC 8 cut(s) 39, 64, 175, 626, 722, 1250, 1448, 1451
BstV2I GAAGAC 1 cut(s) 1078
BstX2I RGATCY 1 cut(s) 1040
BstYI RGATCY 1 cut(s) 1040
BsuRI GGCC 7 cut(s) 5, 15, 482, 602, 1148, 1206, 1253
BtgI CCRYGG 3 cut(s) 183, 603, 1044
BtsCI GGATG 4 cut(s) 216, 757, 942, 1218
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 531, 684
BtuMI TCGCGA 1 cut(s) 363
Cac8I GCNNGC 4 cut(s) 529, 1174, 1503, 1687
CfoI GCGC 2 cut(s) 697, 729
Cfr13I GGNCC 4 cut(s) 665, 822, 1049, 1147
Cfr42I CCGCGG 1 cut(s) 606
CseI GACGC 2 cut(s) 748, 1062
Csp6I GTAC 3 cut(s) 151, 1580, 1642
CviAII CATG 7 cut(s) 148, 184, 310, 743, 1045, 1280, 1288
CviQI GTAC 3 cut(s) 151, 1580, 1642
DdeI CTNAG 4 cut(s) 795, 1421, 1475, 1692
DpnI GATC 7 cut(s) 447, 623, 857, 1042, 1103, 1284, 1404
DpnII GATC 7 cut(s) 445, 621, 855, 1040, 1101, 1282, 1402
EaeI YGGCCR 2 cut(s) 3, 600
Ecl136II GAGCTC 1 cut(s) 489
Eco130I CCWWGG 3 cut(s) 183, 896, 1044
Eco24I GRGCYC 2 cut(s) 491, 1386
Eco47I GGWCC 3 cut(s) 665, 822, 1049
Eco53kI GAGCTC 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 489
EcoO109I RGGNCCY 2 cut(s) 665, 1049
EcoT14I CCWWGG 3 cut(s) 183, 896, 1044
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 2 cut(s) 491, 1386
ErhI CCWWGG 3 cut(s) 183, 896, 1044
Esp3I CGTCTC 3 cut(s) 228, 385, 731
FaeI CATG 7 cut(s) 151, 187, 313, 746, 1048, 1283, 1291
FaqI GGGAC 4 cut(s) 332, 1062, 1100, 1124
FatI CATG 7 cut(s) 147, 183, 309, 742, 1044, 1279, 1287
FauI CCCGC 1 cut(s) 1177
FauNDI CATATG 1 cut(s) 786
FbaI TGATCA 2 cut(s) 855, 1402
FokI GGATG 4 cut(s) 223, 764, 929, 1205
FriOI GRGCYC 2 cut(s) 491, 1386
FspBI CTAG 4 cut(s) 638, 819, 1244, 1457
GlaI GCGC 2 cut(s) 696, 728
GsaI CCCAGC 3 cut(s) 580, 621, 1073
HaeIII GGCC 7 cut(s) 5, 15, 482, 602, 1148, 1206, 1253
HapII CCGG 2 cut(s) 655, 1129
HgaI GACGC 2 cut(s) 748, 1062
HhaI GCGC 2 cut(s) 697, 729
Hin1II CATG 7 cut(s) 151, 187, 313, 746, 1048, 1283, 1291
Hin6I GCGC 2 cut(s) 695, 727
HinP1I GCGC 2 cut(s) 695, 727
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 1468
HinfI GANTC 5 cut(s) 34, 257, 461, 676, 781
HpaII CCGG 2 cut(s) 655, 1129
HphI GGTGA 2 cut(s) 416, 1102
Hpy166II GTNNAC 4 cut(s) 202, 684, 1623, 1642
Hpy188I TCNGA 3 cut(s) 466, 957, 1363
Hpy188III TCNNGA 8 cut(s) 277, 362, 563, 673, 842, 1099, 1161, 1562
Hpy8I GTNNAC 4 cut(s) 202, 684, 1623, 1642
Hpy99I CGWCG 3 cut(s) 404, 1078, 1094
HpyAV CCTTC 5 cut(s) 48, 401, 445, 463, 727
HpyCH4III ACNGT 4 cut(s) 535, 593, 1114, 1183
HpyCH4IV ACGT 3 cut(s) 198, 570, 1227
HpyCH4V TGCA 6 cut(s) 119, 355, 875, 1501, 1586, 1628
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 251, 611, 1417, 1682
HpyF3I CTNAG 4 cut(s) 795, 1421, 1475, 1692
HpySE526I ACGT 3 cut(s) 198, 570, 1227
Hsp92II CATG 7 cut(s) 151, 187, 313, 746, 1048, 1283, 1291
HspAI GCGC 2 cut(s) 695, 727
Ksp22I TGATCA 2 cut(s) 855, 1402
KspI CCGCGG 1 cut(s) 606
Kzo9I GATC 7 cut(s) 445, 621, 855, 1040, 1101, 1282, 1402
LmnI GCTCC 3 cut(s) 1335, 1389, 1517
Lsp1109I GCAGC 8 cut(s) 39, 64, 175, 626, 722, 1250, 1448, 1451
LweI GCATC 3 cut(s) 862, 884, 1104
MaeI CTAG 4 cut(s) 638, 819, 1244, 1457
MaeII ACGT 3 cut(s) 198, 570, 1227
MaeIII GTNAC 2 cut(s) 21, 650
MalI GATC 7 cut(s) 447, 623, 857, 1042, 1103, 1284, 1404
MboI GATC 7 cut(s) 445, 621, 855, 1040, 1101, 1282, 1402
MboII GAAGA 4 cut(s) 367, 487, 938, 1078
MflI RGATCY 1 cut(s) 1040
MhlI GDGCHC 4 cut(s) 417, 491, 1386, 1558
MluCI AATT 8 cut(s) 522, 642, 830, 1194, 1314, 1347, 1391, 1603
MlyI GAGTC 3 cut(s) 455, 685, 775
MmeI TCCRAC 1 cut(s) 1444
Mph1103I ATGCAT 1 cut(s) 877
MseI TTAA 4 cut(s) 645, 974, 1080, 1548
MslI CAYNNNNRTG 4 cut(s) 95, 314, 689, 1181
MspA1I CMGCKG 2 cut(s) 605, 617
MspI CCGG 2 cut(s) 655, 1129
MvnI CGCG 3 cut(s) 363, 605, 729
MwoI GCNNNNNNNGC 5 cut(s) 188, 251, 611, 1417, 1682
NcoI CCATGG 2 cut(s) 183, 1044
NdeI CATATG 1 cut(s) 786
NdeII GATC 7 cut(s) 445, 621, 855, 1040, 1101, 1282, 1402
NlaIII CATG 7 cut(s) 151, 187, 313, 746, 1048, 1283, 1291
NlaIV GGNNCC 5 cut(s) 893, 1027, 1050, 1331, 1385
NruI TCGCGA 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 877
OliI CACNNNNGTG 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 884
PfeI GAWTC 2 cut(s) 34, 257
PleI GAGTC 3 cut(s) 455, 684, 775
PpsI GAGTC 3 cut(s) 455, 684, 775
PpuMI RGGWCCY 2 cut(s) 665, 1049
Psp124BI GAGCTC 1 cut(s) 491
Psp5II RGGWCCY 2 cut(s) 665, 1049
PspFI CCCAGC 3 cut(s) 576, 617, 1069
PspN4I GGNNCC 5 cut(s) 893, 1027, 1050, 1331, 1385
PspPI GGNCC 4 cut(s) 665, 822, 1049, 1147
PspPPI RGGWCCY 2 cut(s) 665, 1049
PsuI RGATCY 1 cut(s) 1040
PvuII CAGCTG 1 cut(s) 617
RruI TCGCGA 1 cut(s) 363
RsaI GTAC 3 cut(s) 152, 1581, 1643
RsaNI GTAC 3 cut(s) 151, 1580, 1642
RseI CAYNNNNRTG 4 cut(s) 95, 314, 689, 1181
SacI GAGCTC 1 cut(s) 491
SacII CCGCGG 1 cut(s) 606
SaqAI TTAA 4 cut(s) 645, 974, 1080, 1548
Sau3AI GATC 7 cut(s) 445, 621, 855, 1040, 1101, 1282, 1402
Sau96I GGNCC 4 cut(s) 665, 822, 1049, 1147
SchI GAGTC 3 cut(s) 455, 685, 775
SduI GDGCHC 4 cut(s) 417, 491, 1386, 1558
SfaNI GCATC 3 cut(s) 862, 884, 1104
SfcI CTRYAG 1 cut(s) 177
Sfr303I CCGCGG 1 cut(s) 606
SgrBI CCGCGG 1 cut(s) 606
SinI GGWCC 3 cut(s) 665, 822, 1049
SmiMI CAYNNNNRTG 4 cut(s) 95, 314, 689, 1181
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 8 cut(s) 522, 642, 830, 1194, 1314, 1347, 1391, 1603
SsiI CCGC 6 cut(s) 441, 603, 605, 708, 1170, 1235
SspMI CTAG 4 cut(s) 638, 819, 1244, 1457
SstI GAGCTC 1 cut(s) 491
StyI CCWWGG 3 cut(s) 183, 896, 1044
TaaI ACNGT 4 cut(s) 535, 593, 1114, 1183
TaiI ACGT 3 cut(s) 201, 573, 1230
TaqI TCGA 1 cut(s) 878
TaqII GACCGA 1 cut(s) 257
TasI AATT 8 cut(s) 522, 642, 830, 1194, 1314, 1347, 1391, 1603
TatI WGTACW 1 cut(s) 1641
TauI GCSGC 4 cut(s) 443, 605, 710, 1238
TfiI GAWTC 2 cut(s) 34, 257
Tru1I TTAA 4 cut(s) 645, 974, 1080, 1548
Tru9I TTAA 4 cut(s) 645, 974, 1080, 1548
TscAI CASTG 2 cut(s) 538, 691
TseI GCWGC 8 cut(s) 27, 77, 188, 614, 710, 1238, 1436, 1439
TspDTI ATGAA 4 cut(s) 76, 177, 298, 1049
TspGWI ACGGA 4 cut(s) 331, 669, 733, 935
TspRI CASTG 2 cut(s) 538, 691
VpaK11BI GGWCC 3 cut(s) 665, 822, 1049
XapI RAATTY 1 cut(s) 1603
XcmI CCANNNNNNNNNTGG 4 cut(s) 1225, 1320, 1492, 1667
XspI CTAG 4 cut(s) 638, 819, 1244, 1457
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.