MD07G1039100.v1.1

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000830
Physical Location & Seq
Reverse (-)
3293256 .. 3295279
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1039100.v1.1.491

Sequence Viewer

Length: 873 bp
ATGTGTAAAGGAAATATGGAGTTAAAATATGCATCAACGATACCTAGAAATCCATGGAGGCTATGCTCTCTCAACCAAGTGGAAGAAGTGAAGCTCGTCCTCCGACTCATCCCCCTATGGTTGAGTTGCCTAATGTTTGGCGTAATCGAAGCCCAACTTCACACCTTCTTCACCAAACAAAGTAGCACAACCATCCGATCGATCAGTCCCCATTTCCAGGTTCCTGCGGCATCACTTCAAGGCCTCGTTGGCATTGCAATCCTAATCGCCGTTCCAATCTACGACCGGTTTTTTGTCCCAATAGCCAGAAAATATACGGGACACCCCTCGGGTATTACTGTGCTACAAAGAATCGGCATTGGGCTAGCTCTATCCATACTTGTTATGGTTGTCTCGGCTCTAGTAGAGGCCAAAAGGCTCAACATTGCAAAAGACTACAATCTCATTGATAAAGCTAAAGCAATGGTACCAATGAGGGTATGGTGGTTACTCCCACAATACTTGATTCTTGGCCTCGCAAATGCGTTCACCACGGTTGGACTTCAAGAATTGTTCTACGATCAAATGCCGGAGCAAATGAGAAGCATGGGAGCGGCAGCGTCTATGAGTGTTGTAGGAGTTGGCAGCTTCATTAGCAATTGGATTATATCTGTTGCGGAGTTAATTACCTCAAGAAATGGTGACAAATGGCTTGGTGACAATATCAATCGGGCTCACCTCGATTACTTCTATTGGGTGCTGGCAGTTTTGAGCACACTAAATTTGTGTGTTTATGTGTTAATTGCAAATGCTTTTGTGTACAAAAAGGTCGGAAGAGAAGTCAAAGTGAAGACGGATTTGAGCTTTGCAAACAACCATGGTGGAGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

291

Amino Acids

32.37

Weight (kDa)

9.43

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 13 - 225 6.3e-44 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 466
AccB1I GGYRCC 1 cut(s) 466
AccBSI CCGCTC 1 cut(s) 593
AciI CCGC 3 cut(s) 227, 593, 656
AcsI RAATTY 1 cut(s) 760
AfaI GTAC 2 cut(s) 468, 800
AfiI CCNNNNNNNGG 1 cut(s) 217
AgeI ACCGGT 1 cut(s) 285
AgsI TTSAA 2 cut(s) 239, 545
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 5 cut(s) 94, 368, 455, 627, 843
AluI AGCT 5 cut(s) 94, 368, 455, 627, 843
Alw21I GWGCWC 1 cut(s) 755
Alw26I GTCTC 1 cut(s) 397
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 3 cut(s) 241, 408, 511
ApeKI GCWGC 2 cut(s) 596, 624
ApoI RAATTY 1 cut(s) 760
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AsiGI ACCGGT 1 cut(s) 285
Asp718I GGTACC 1 cut(s) 466
AsuHPI GGTGA 5 cut(s) 163, 520, 692, 707, 707
AsuNHI GCTAGC 1 cut(s) 364
AvaI CYCGRG 1 cut(s) 328
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 715
BbsI GAAGAC 1 cut(s) 836
Bbv12I GWGCWC 1 cut(s) 755
BbvI GCAGC 2 cut(s) 608, 636
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 3 cut(s) 45, 365, 401
BglI GCCNNNNNGGC 1 cut(s) 249
BisI GCNGC 4 cut(s) 228, 594, 597, 625
BlsI GCNGC 4 cut(s) 229, 595, 598, 626
Bme1390I CCNGG 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 328
BmiI GGNNCC 2 cut(s) 222, 468
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 41, 239
BmtI GCTAGC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 836
BpuEI CTTGAG 1 cut(s) 655
Bsa29I ATCGAT 1 cut(s) 200
BsaJI CCNNGG 4 cut(s) 53, 327, 531, 856
BsaWI WCCGGW 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 285
Bse3DI GCAATG 3 cut(s) 252, 423, 468
BseBI CCWGG 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 53, 327, 531, 856
BseGI GGATG 2 cut(s) 108, 192
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 3 cut(s) 252, 423, 468
BseXI GCAGC 2 cut(s) 608, 636
Bsh1285I CGRYCG 2 cut(s) 200, 286
BshFI GGCC 3 cut(s) 243, 410, 513
BshNI GGYRCC 1 cut(s) 466
BshTI ACCGGT 1 cut(s) 285
BshVI ATCGAT 1 cut(s) 200
BsiEI CGRYCG 2 cut(s) 200, 286
BsiHKAI GWGCWC 1 cut(s) 755
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 2 cut(s) 286, 569
BslFI GGGAC 3 cut(s) 192, 281, 333
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 3 cut(s) 192, 281, 333
BsnI GGCC 3 cut(s) 243, 410, 513
BsoBI CYCGRG 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 715, 755
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 3 cut(s) 197, 201, 559
Bsp19I CCATGG 2 cut(s) 53, 856
BspACI CCGC 3 cut(s) 227, 593, 656
BspANI GGCC 3 cut(s) 243, 410, 513
BspDI ATCGAT 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 222, 468
BspOI GCTAGC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 593
BsrDI GCAATG 3 cut(s) 252, 423, 468
BsrFI RCCGGY 1 cut(s) 285
BsrGI TGTACA 1 cut(s) 798
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 4 cut(s) 53, 327, 531, 856
BssMI GATC 3 cut(s) 197, 201, 559
BssT1I CCWWGG 2 cut(s) 53, 856
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 340, 535
Bst6I CTCTTC 1 cut(s) 808
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 2 cut(s) 366, 741
BstDSI CCRYGG 3 cut(s) 53, 531, 856
BstF5I GGATG 2 cut(s) 108, 192
BstKTI GATC 3 cut(s) 200, 204, 562
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 3 cut(s) 197, 201, 559
BstMCI CGRYCG 2 cut(s) 200, 286
BstMWI GCNNNNNNNGC 2 cut(s) 249, 633
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 2 cut(s) 608, 636
BstV2I GAAGAC 1 cut(s) 836
Bsu15I ATCGAT 1 cut(s) 200
BsuRI GGCC 3 cut(s) 243, 410, 513
BsuTUI ATCGAT 1 cut(s) 200
BtgI CCRYGG 3 cut(s) 53, 531, 856
BtsCI GGATG 2 cut(s) 108, 192
Cac8I GCNNGC 2 cut(s) 366, 741
Cfr10I RCCGGY 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 200
CseI GACGC 1 cut(s) 588
Csp6I GTAC 2 cut(s) 467, 799
CspAI ACCGGT 1 cut(s) 285
CspCI CAANNNNNGTGG 3 cut(s) 483, 518, 841
CviAII CATG 3 cut(s) 54, 586, 857
CviQI GTAC 2 cut(s) 467, 799
DpnI GATC 3 cut(s) 199, 203, 561
DpnII GATC 3 cut(s) 197, 201, 559
Eam1104I CTCTTC 1 cut(s) 808
EarI CTCTTC 1 cut(s) 808
Eco130I CCWWGG 2 cut(s) 53, 856
Eco147I AGGCCT 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 715
Eco88I CYCGRG 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 2 cut(s) 53, 856
EcoT22I ATGCAT 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 715
ErhI CCWWGG 2 cut(s) 53, 856
FaeI CATG 3 cut(s) 57, 589, 860
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 3 cut(s) 192, 281, 333
FatI CATG 3 cut(s) 53, 585, 856
Fnu4HI GCNGC 4 cut(s) 228, 594, 597, 625
FokI GGATG 2 cut(s) 95, 179
FriOI GRGCYC 1 cut(s) 715
Fsp4HI GCNGC 4 cut(s) 228, 594, 597, 625
FspBI CTAG 3 cut(s) 45, 365, 401
GluI GCNGC 4 cut(s) 228, 594, 597, 625
HaeIII GGCC 3 cut(s) 243, 410, 513
HapII CCGG 2 cut(s) 286, 569
HgaI GACGC 1 cut(s) 588
Hin1II CATG 3 cut(s) 57, 589, 860
HinfI GANTC 3 cut(s) 105, 351, 505
HpaII CCGG 2 cut(s) 286, 569
HphI GGTGA 5 cut(s) 163, 520, 692, 707, 707
Hpy166II GTNNAC 2 cut(s) 528, 799
Hpy188I TCNGA 3 cut(s) 104, 197, 812
Hpy188III TCNNGA 2 cut(s) 545, 672
Hpy8I GTNNAC 2 cut(s) 528, 799
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 2 cut(s) 340, 535
HpyCH4V TGCA 5 cut(s) 32, 257, 428, 785, 848
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 633
Hsp92II CATG 3 cut(s) 57, 589, 860
KpnI GGTACC 1 cut(s) 470
Kzo9I GATC 3 cut(s) 197, 201, 559
LmnI GCTCC 2 cut(s) 571, 590
LpnPI CCDG 7 cut(s) 203, 230, 237, 299, 319, 582, 725
Lsp1109I GCAGC 2 cut(s) 608, 636
LweI GCATC 2 cut(s) 41, 239
MaeI CTAG 3 cut(s) 45, 365, 401
MaeIII GTNAC 3 cut(s) 486, 680, 695
MalI GATC 3 cut(s) 199, 203, 561
MbiI CCGCTC 1 cut(s) 593
MboI GATC 3 cut(s) 197, 201, 559
MboII GAAGA 4 cut(s) 95, 160, 825, 841
MfeI CAATTG 1 cut(s) 637
MhlI GDGCHC 2 cut(s) 715, 755
MluCI AATT 5 cut(s) 548, 637, 663, 760, 780
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 3 cut(s) 127, 517, 790
MnlI CCTC 9 cut(s) 51, 110, 254, 337, 400, 468, 524, 679, 728
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 3 cut(s) 23, 662, 779
MspI CCGG 2 cut(s) 286, 569
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 249, 633
NcoI CCATGG 2 cut(s) 53, 856
NdeII GATC 3 cut(s) 197, 201, 559
NheI GCTAGC 1 cut(s) 364
NlaIII CATG 3 cut(s) 57, 589, 860
NlaIV GGNNCC 2 cut(s) 222, 468
NmeAIII GCCGAG 1 cut(s) 374
NmuCI GTSAC 2 cut(s) 680, 695
NsiI ATGCAT 1 cut(s) 34
PceI AGGCCT 1 cut(s) 243
PfeI GAWTC 2 cut(s) 351, 505
PinAI ACCGGT 1 cut(s) 285
PkrI GCNGC 4 cut(s) 229, 595, 598, 626
Ple19I CGATCG 1 cut(s) 200
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 222, 468
PvuI CGATCG 1 cut(s) 200
RsaI GTAC 2 cut(s) 468, 800
RsaNI GTAC 2 cut(s) 467, 799
SaqAI TTAA 3 cut(s) 23, 662, 779
SatI GCNGC 4 cut(s) 228, 594, 597, 625
Sau3AI GATC 3 cut(s) 197, 201, 559
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 2 cut(s) 715, 755
SfaNI GCATC 2 cut(s) 41, 239
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 5 cut(s) 548, 637, 663, 760, 780
SseBI AGGCCT 1 cut(s) 243
SsiI CCGC 3 cut(s) 227, 593, 656
SspMI CTAG 3 cut(s) 45, 365, 401
StuI AGGCCT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 2 cut(s) 53, 856
TaaI ACNGT 2 cut(s) 340, 535
TaqI TCGA 3 cut(s) 147, 200, 720
TasI AATT 5 cut(s) 548, 637, 663, 760, 780
TatI WGTACW 1 cut(s) 798
TauI GCSGC 2 cut(s) 230, 596
TfiI GAWTC 2 cut(s) 351, 505
Tru1I TTAA 3 cut(s) 23, 662, 779
Tru9I TTAA 3 cut(s) 23, 662, 779
TseFI GTSAC 2 cut(s) 680, 695
TseI GCWGC 2 cut(s) 596, 624
Tsp45I GTSAC 2 cut(s) 680, 695
TspDTI ATGAA 1 cut(s) 619
TspGWI ACGGA 1 cut(s) 848
XapI RAATTY 1 cut(s) 760
XcmI CCANNNNNNNNNTGG 2 cut(s) 382, 477
XspI CTAG 3 cut(s) 45, 365, 401
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.