Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001118

Physical Location & Seq

Genomic Coordinates Forward (+)

22740344 .. 22740895

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCATTAAACTTGGTACCCAAGTTCACTAATCGATCCCTACTGTTGGTCCTGGTTCTATCCATGACTACATTTTCCGGCATAGCCAGTGGCAGTAAAGAGTTCAAAGAAACCAACATGTCCATGTACCTTCACGATTTCATTTCCGGTCCAAATGTCACAGACATACCAGTTGCTGGTGTTGCCGGAAAGCTTTGGACCTTCAGTCAATTTGGATCATTTTATGTCACTGACAACCCTCTCACAGAAGGACCAAGCCTACACTCCCCAGCAGTAGGCCGAGCCCAAGGTGTTTTTGTGGCTTCAGCACTGGACGGACTTAGTGCCCTTATTGTGTTTTCAGTTCGGTTCACAAACAAGGAGTACAATGGCAGCACAATAGAGATACAAGGAAATAGTATTTTAATGGAGCCGGTTAGAGAGCTTTCGGTGGTATCCGGTACCGGGAAGTTCCGGTTTGCTAGAGGGTACGCTACGTGTGAATTCTATTCTGTGGACACTCCGGCTGGATACGCAGTTGTACGATTGAACATTACAGTTGAACACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

184

Amino Acids

19.83

Weight (kDa)

6.83

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	38 - 180	1.2e-46	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42490 FvH4_6g42500 FvH4_6g42510 FvH4_6g42930 FvH4_7g31480
malus_domestica	MD09G1070400.v1.1 MD09G1111300.v1.1 MD09G1111600.v1.1
prunus_persica	Prupe.3G215100_v2.0.a1 Prupe.3G215500_v2.0.a1 Prupe.3G215600_v2.0.a1
pyrus_communis	pycom09g03340 pycom09g03530 pycom09g03590
rosa_chinensis	RchiOBHm_Chr2g0158861 RchiOBHm_Chr2g0158891 RchiOBHm_Chr2g0158911
rosa_laevigata	RLG00000021118 RLG00000021121 RLG00000021122 RLG00000021123
rosa_multiflora	Rmu_sc0002267.1_g000001 Rmu_sc0002267.1_g000002 Rmu_sc0002267.1_g000003 Rmu_sc0002267.1_g000009 Rmu_sc0002267.1_g000013 Rmu_sc0014404.1_g000006 Rmu_sc0014404.1_g000009 Rmu_sc0014404.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090880 Rroxscaffold_2G00090950
rosa_rugosa	Rorug02G0467800 Rorug02G0468200 Rorug02G0473000 Rorug02G0473000 Rorug02G0473000
rosa_samantha	Rh2AG533900 Rh2AG534200 Rh2AG539000 Rh2AG539200 Rh2BG547600 Rh2BG547700 Rh2BG551600 Rh2BG552000 Rh2BG552100 Rh2BG552200 Rh2CG517900 Rh2CG518100 Rh2CG522300 Rh2CG522600 Rh2DG557200 Rh2DG557300 Rh2DG561400 Rh2DG561800 Rh2DG562000
rosa_wichuraiana	Rw2G044240 Rw2G044600 Rw2G044630 Rw2G044640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	16, 440
AccB1I	GGYRCC	2 cut(s)	16, 440
AccB7I	CCANNNNNTGG	1 cut(s)	176
AclWI	GGATC	2 cut(s)	30, 223
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	2 cut(s)	187, 288
AfaI	GTAC	6 cut(s)	18, 128, 365, 442, 470, 522
AfiI	CCNNNNNNNGG	4 cut(s)	46, 176, 275, 444
AflIII	ACRYGT	2 cut(s)	117, 476
AgsI	TTSAA	3 cut(s)	106, 529, 542
AhdI	GACNNNNNGTC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	2 cut(s)	193, 424
AluI	AGCT	2 cut(s)	193, 424
AlwI	GGATC	2 cut(s)	30, 223
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	372
ApoI	RAATTY	1 cut(s)	482
Asp718I	GGTACC	2 cut(s)	16, 440
AspS9I	GGNCC	4 cut(s)	49, 149, 198, 251
AsuC2I	CCSGG	1 cut(s)	445
AvaII	GGWCC	4 cut(s)	49, 149, 198, 251
BaeGI	GKGCMC	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
BanI	GGYRCC	2 cut(s)	16, 440
BanII	GRGCYC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	384
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	2 cut(s)	445, 503
BcnI	CCSGG	1 cut(s)	445
BfaI	CTAG	1 cut(s)	462
BfuI	GTATCC	2 cut(s)	445, 503
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
Bme1390I	CCNGG	2 cut(s)	53, 445
Bme18I	GGWCC	4 cut(s)	49, 149, 198, 251
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmgT120I	GGNCC	4 cut(s)	49, 149, 198, 251
BmiI	GGNNCC	3 cut(s)	18, 411, 442
BmrFI	CCNGG	2 cut(s)	53, 445
BpuMI	CCSGG	1 cut(s)	445
Bsa29I	ATCGAT	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	3 cut(s)	146, 437, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 176, 275, 444
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	3 cut(s)	87, 170, 315
BseBI	CCWGG	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	4 cut(s)	46, 176, 275, 444
BseNI	ACTGG	3 cut(s)	87, 170, 315
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	384
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	2 cut(s)	16, 440
BshVI	ATCGAT	1 cut(s)	34
BsiSI	CCGG	8 cut(s)	78, 147, 186, 413, 438, 444, 454, 503
BslI	CCNNNNNNNGG	4 cut(s)	46, 176, 275, 444
BsnI	GGCC	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	286, 328
Bsp143I	GATC	2 cut(s)	35, 215
BspANI	GGCC	1 cut(s)	279
BspDI	ATCGAT	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	18, 411, 442
BspPI	GGATC	2 cut(s)	30, 223
BspT107I	GGYRCC	2 cut(s)	16, 440
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	87, 170, 315
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	35, 215
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	45, 538
BstBAI	YACGTR	1 cut(s)	477
BstDEI	CTNAG	1 cut(s)	320
BstKTI	GATC	2 cut(s)	38, 218
BstMBI	GATC	2 cut(s)	35, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 512
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	51, 443
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	384
Bsu15I	ATCGAT	1 cut(s)	34
BsuI	GTATCC	2 cut(s)	445, 503
BsuRI	GGCC	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	34
BtsIMutI	CAGTG	3 cut(s)	94, 228, 308
CaiI	CAGNNNCTG	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	4 cut(s)	49, 149, 198, 251
ClaI	ATCGAT	1 cut(s)	34
Csp6I	GTAC	6 cut(s)	17, 127, 364, 441, 469, 521
CviAII	CATG	3 cut(s)	64, 118, 124
CviJI	RGCY	9 cut(s)	86, 193, 258, 279, 284, 302, 412, 424, 506
CviKI_1	RGCY	9 cut(s)	86, 193, 258, 279, 284, 302, 412, 424, 506
CviQI	GTAC	6 cut(s)	17, 127, 364, 441, 469, 521
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	37, 217
DpnII	GATC	2 cut(s)	35, 215
DriI	GACNNNNNGTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	4 cut(s)	49, 149, 198, 251
Eco57I	CTGAAG	2 cut(s)	187, 288
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	3 cut(s)	67, 121, 127
FaiI	YATR	6 cut(s)	65, 83, 119, 125, 167, 225
FatI	CATG	3 cut(s)	63, 117, 123
Fnu4HI	GCNGC	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	1 cut(s)	373
GsaI	CCCAGC	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	8 cut(s)	78, 147, 186, 413, 438, 444, 454, 503
Hin1II	CATG	3 cut(s)	67, 121, 127
HindIII	AAGCTT	1 cut(s)	191
HpaII	CCGG	8 cut(s)	78, 147, 186, 413, 438, 444, 454, 503
Hpy166II	GTNNAC	3 cut(s)	27, 351, 496
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	3 cut(s)	27, 351, 496
HpyAV	CCTTC	3 cut(s)	140, 211, 242
HpyCH4III	ACNGT	2 cut(s)	45, 538
HpyCH4IV	ACGT	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 512
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	3 cut(s)	67, 121, 127
KpnI	GGTACC	2 cut(s)	20, 444
Kzo9I	GATC	2 cut(s)	35, 215
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	384
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	157, 226
MalI	GATC	2 cut(s)	37, 217
MboI	GATC	2 cut(s)	35, 215
MhlI	GDGCHC	2 cut(s)	286, 328
MluCI	AATT	2 cut(s)	209, 482
MnlI	CCTC	2 cut(s)	249, 458
MseI	TTAA	2 cut(s)	8, 404
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	8 cut(s)	78, 147, 186, 413, 438, 444, 454, 503
MspR9I	CCNGG	2 cut(s)	53, 445
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	182, 512
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	2 cut(s)	35, 215
NlaIII	CATG	3 cut(s)	67, 121, 127
NlaIV	GGNNCC	3 cut(s)	18, 411, 442
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	157, 226
NspI	RCATGY	1 cut(s)	121
PciI	ACATGT	1 cut(s)	117
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	374
Ppu21I	YACGTR	1 cut(s)	477
PscI	ACATGT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	18, 411, 442
PspPI	GGNCC	4 cut(s)	49, 149, 198, 251
PstNI	CAGNNNCTG	1 cut(s)	176
RsaI	GTAC	6 cut(s)	18, 128, 365, 442, 470, 522
RsaNI	GTAC	6 cut(s)	17, 127, 364, 441, 469, 521
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	8, 404
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	2 cut(s)	35, 215
Sau96I	GGNCC	4 cut(s)	49, 149, 198, 251
ScrFI	CCNGG	2 cut(s)	53, 445
SduI	GDGCHC	2 cut(s)	286, 328
SetI	ASST	7 cut(s)	132, 195, 203, 292, 426, 479, 551
SinI	GGWCC	4 cut(s)	49, 149, 198, 251
SmiMI	CAYNNNNRTG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	209, 482
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	2 cut(s)	51, 443
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	45, 538
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	1 cut(s)	34
TasI	AATT	2 cut(s)	209, 482
TatI	WGTACW	1 cut(s)	363
Tru1I	TTAA	2 cut(s)	8, 404
Tru9I	TTAA	2 cut(s)	8, 404
TscAI	CASTG	3 cut(s)	94, 235, 315
TseFI	GTSAC	2 cut(s)	157, 226
TseI	GCWGC	1 cut(s)	372
Tsp45I	GTSAC	2 cut(s)	157, 226
TspDTI	ATGAA	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	3 cut(s)	94, 235, 315
Van91I	CCANNNNNTGG	1 cut(s)	176
VpaK11BI	GGWCC	4 cut(s)	49, 149, 198, 251
XapI	RAATTY	1 cut(s)	482
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.