Rmu_sc0002267.1_g000002

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002267.1
OG0001118
Physical Location & Seq
Forward (+)
12981 .. 13469
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002267.1_g000002.1.cds

Sequence Viewer

Length: 489 bp
atgaatacattttccgccataggcggtagctgtgaagagttcaaagaaacccacatgtccatgtaccttcaggacttcattgccggtccaaatatcacagacataccgattgcgggtgtcgctggaaagctttggaccttcagtcaatttggaacatattatgtcactgacaaccctatcaccgaaggtccaagcgcacaatcggcagaagtgggccgagccccaggtatttttgtggcttcagcgctggacggatttagtggtcttgttctgttttcagttgtgttcacaaacaaggagtacaatggcagcaccattgagatactaggaaacagtaagataatggagccggttagagaactttcggtggtatccggtaccggaaagtttcgttttgccagagggtatgctacgtgtgaaacctattttctggacattccgaaagcatactcagttattcgattcaacataacagtgcaacacaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

162

Amino Acids

17.67

Weight (kDa)

5.34

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 3 cut(s) 15, 24, 113
AcuI CTGAAG 3 cut(s) 53, 124, 225
AfaI GTAC 3 cut(s) 65, 302, 379
AfeI AGCGCT 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 2 cut(s) 54, 413
AgsI TTSAA 2 cut(s) 43, 466
AhdI GACNNNNNGTC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 30, 130
AluI AGCT 2 cut(s) 30, 130
Aor51HI AGCGCT 1 cut(s) 246
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 309
Asp718I GGTACC 1 cut(s) 377
AspLEI GCGC 2 cut(s) 197, 247
AspS9I GGNCC 4 cut(s) 86, 135, 188, 214
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 3 cut(s) 86, 135, 188
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 382
BfaI CTAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 248
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 3 cut(s) 86, 135, 188
BmeRI GACNNNNNGTC 1 cut(s) 141
BmgT120I GGNCC 4 cut(s) 86, 135, 188, 214
BmiI GGNNCC 2 cut(s) 348, 379
BmrFI CCNGG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 2 cut(s) 374, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse118I RCCGGY 2 cut(s) 83, 349
Bse3DI GCAATG 1 cut(s) 78
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 321
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 4 cut(s) 84, 350, 375, 381
BslI CCNNNNNNNGG 1 cut(s) 113
BsnI GGCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 223
BspACI CCGC 3 cut(s) 15, 24, 113
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 464
BspLI GGNNCC 2 cut(s) 348, 379
BspT107I GGYRCC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 78
BsrFI RCCGGY 2 cut(s) 83, 349
BssAI RCCGGY 2 cut(s) 83, 349
BssECI CCNNGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 335, 475
Bst6I CTCTTC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 451
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 2 cut(s) 197, 247
BstMWI GCNNNNNNNGC 2 cut(s) 119, 203
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 165, 480
CfoI GCGC 2 cut(s) 197, 247
Cfr10I RCCGGY 2 cut(s) 83, 349
Cfr13I GGNCC 4 cut(s) 86, 135, 188, 214
Csp6I GTAC 3 cut(s) 64, 301, 378
CviAII CATG 2 cut(s) 55, 61
CviJI RGCY 6 cut(s) 30, 130, 216, 221, 239, 349
CviKI_1 RGCY 6 cut(s) 30, 130, 216, 221, 239, 349
CviQI GTAC 3 cut(s) 64, 301, 378
DdeI CTNAG 1 cut(s) 451
DriI GACNNNNNGTC 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 4
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 3 cut(s) 86, 135, 188
Eco47III AGCGCT 1 cut(s) 246
Eco57I CTGAAG 3 cut(s) 53, 124, 225
EcoRII CCWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 223
FaeI CATG 2 cut(s) 58, 64
FaiI YATR 9 cut(s) 20, 56, 62, 104, 157, 162, 408, 448, 470
FatI CATG 2 cut(s) 54, 60
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 310
FspBI CTAG 1 cut(s) 326
GlaI GCGC 2 cut(s) 196, 246
GluI GCNGC 1 cut(s) 310
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 1 cut(s) 216
HapII CCGG 4 cut(s) 84, 350, 375, 381
HhaI GCGC 2 cut(s) 197, 247
Hin1II CATG 2 cut(s) 58, 64
Hin6I GCGC 2 cut(s) 195, 245
HinP1I GCGC 2 cut(s) 195, 245
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 462
HpaII CCGG 4 cut(s) 84, 350, 375, 381
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 2 cut(s) 71, 431
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 77, 148, 179
HpyCH4III ACNGT 2 cut(s) 335, 475
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 1 cut(s) 478
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 203
HpyF3I CTNAG 1 cut(s) 451
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 2 cut(s) 58, 64
HspAI GCGC 2 cut(s) 195, 245
KpnI GGTACC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 1 cut(s) 321
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 1 cut(s) 146
MnlI CCTC 1 cut(s) 395
MslI CAYNNNNRTG 2 cut(s) 59, 473
MspI CCGG 4 cut(s) 84, 350, 375, 381
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 119, 203
NlaIII CATG 2 cut(s) 58, 64
NlaIV GGNNCC 2 cut(s) 348, 379
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 58
PciI ACATGT 1 cut(s) 54
PfeI GAWTC 1 cut(s) 462
PkrI GCNGC 1 cut(s) 311
Ppu21I YACGTR 1 cut(s) 414
PscI ACATGT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 348, 379
PspPI GGNCC 4 cut(s) 86, 135, 188, 214
RsaI GTAC 3 cut(s) 65, 302, 379
RsaNI GTAC 3 cut(s) 64, 301, 378
RseI CAYNNNNRTG 2 cut(s) 59, 473
SatI GCNGC 1 cut(s) 310
Sau96I GGNCC 4 cut(s) 86, 135, 188, 214
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 223
SetI ASST 8 cut(s) 32, 69, 132, 140, 190, 229, 416, 425
SinI GGWCC 3 cut(s) 86, 135, 188
SmiMI CAYNNNNRTG 2 cut(s) 59, 473
Sse9I AATT 1 cut(s) 146
SsiI CCGC 3 cut(s) 15, 24, 113
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 335, 475
TaiI ACGT 1 cut(s) 416
TaqI TCGA 1 cut(s) 460
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 1 cut(s) 462
TscAI CASTG 2 cut(s) 172, 480
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 17, 67
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 2 cut(s) 172, 480
VpaK11BI GGWCC 3 cut(s) 86, 135, 188
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.