Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002267.1

Orthogroup ID

OG0001118

Physical Location & Seq

Genomic Coordinates Forward (+)

15719 .. 17633

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002267.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgaatacattttccgccataggcggtagctgtgaagagttcaaagaaacccacatgtccatgtaccttcaggacttcattgccggtccaaatatcacagacataccgattgcgggtgtcgctggaaagctttggaccttcagtcaatttggaacatattatgtcactgacaaccctatcaccgaaggtccaagcgcacaatcggcagaagtgggccgagccccaggtatttttgtggcttcagcgctggacggatttagtggtcttgttctgttttcagttgtgttcacaaacaaggagtacaagggcagcaccattgagatactaggaaacagtaagataatggagccggttagagaactttcggtggtatccggtaccggaaagtttcgttttgccagaggtcatggtgcatgtggggatttctctacgttctgcagaggctgtggaggatcggatgagctggaagtagtaacagtggacgatccaaagtctttgattgctgagagattctggcttgtggggaaagttcttacccataagaagataaacgtggattctttcaggcgtattatcagaaggatttggctgacgaaggaggagttttcaatattggagtgggagagttcggagagttatgtgttttctttcaaaacagagggtgatcgactccgagtgttacaaggaagtccttggtcgtttgataattctctactggcgttggcgcccacggatggtttgattgacccatgtattgtcgatctctctagtctggaattttggattagggcgaaggggctatcgccggcgttgttgaatgacaatatgggaaggaagatcgggggtagtatcaggagttttgtgttgacagatccaaaagtcactagggatggtagtgggagtttcttacgtgagggtgaggattcgactttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

311

Amino Acids

34.14

Weight (kDa)

5.19

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42490 FvH4_6g42500 FvH4_6g42510 FvH4_6g42930 FvH4_7g31480
malus_domestica	MD09G1070400.v1.1 MD09G1111300.v1.1 MD09G1111600.v1.1
prunus_persica	Prupe.3G215100_v2.0.a1 Prupe.3G215500_v2.0.a1 Prupe.3G215600_v2.0.a1
pyrus_communis	pycom09g03340 pycom09g03530 pycom09g03590
rosa_chinensis	RchiOBHm_Chr2g0158861 RchiOBHm_Chr2g0158891 RchiOBHm_Chr2g0158911
rosa_laevigata	RLG00000021118 RLG00000021121 RLG00000021122 RLG00000021123
rosa_multiflora	Rmu_sc0002267.1_g000001 Rmu_sc0002267.1_g000002 Rmu_sc0002267.1_g000003 Rmu_sc0002267.1_g000009 Rmu_sc0002267.1_g000013 Rmu_sc0014404.1_g000006 Rmu_sc0014404.1_g000009 Rmu_sc0014404.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090880 Rroxscaffold_2G00090950
rosa_rugosa	Rorug02G0467800 Rorug02G0468200 Rorug02G0473000 Rorug02G0473000 Rorug02G0473000
rosa_samantha	Rh2AG533900 Rh2AG534200 Rh2AG539000 Rh2AG539200 Rh2BG547600 Rh2BG547700 Rh2BG551600 Rh2BG552000 Rh2BG552100 Rh2BG552200 Rh2CG517900 Rh2CG518100 Rh2CG522300 Rh2CG522600 Rh2DG557200 Rh2DG557300 Rh2DG561400 Rh2DG561800 Rh2DG562000
rosa_wichuraiana	Rw2G044240 Rw2G044600 Rw2G044630 Rw2G044640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	2 cut(s)	377, 724
AciI	CCGC	3 cut(s)	15, 24, 113
AclWI	GGATC	3 cut(s)	460, 479, 866
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	3 cut(s)	53, 124, 225
AcyI	GRCGYC	1 cut(s)	725
AfaI	GTAC	3 cut(s)	65, 302, 379
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	113, 734
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	43, 609, 652, 817
AhdI	GACNNNNNGTC	1 cut(s)	141
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	30, 130, 463
AluI	AGCT	3 cut(s)	30, 130, 463
AlwI	GGATC	3 cut(s)	460, 479, 866
AlwNI	CAGNNNCTG	1 cut(s)	444
Aor51HI	AGCGCT	1 cut(s)	246
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	776
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	3 cut(s)	197, 247, 727
AspS9I	GGNCC	4 cut(s)	86, 135, 188, 214
AsuHPI	GGTGA	3 cut(s)	172, 674, 929
AvaII	GGWCC	3 cut(s)	86, 135, 188
BanI	GGYRCC	2 cut(s)	377, 724
BanII	GRGCYC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	728, 884
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	382
BfaI	CTAG	3 cut(s)	326, 768, 885
BfmI	CTRYAG	1 cut(s)	436
BfoI	RGCGCY	2 cut(s)	248, 728
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	3 cut(s)	86, 135, 188
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmgT120I	GGNCC	4 cut(s)	86, 135, 188, 214
BmiI	GGNNCC	3 cut(s)	348, 379, 726
BmrFI	CCNGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	911
BsaHI	GRCGYC	1 cut(s)	725
BsaJI	CCNNGG	3 cut(s)	223, 692, 729
BsaWI	WCCGGW	2 cut(s)	374, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 734
Bse118I	RCCGGY	3 cut(s)	83, 349, 805
Bse1I	ACTGG	1 cut(s)	720
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	223, 692, 729
BseGI	GGATG	3 cut(s)	463, 739, 895
BseLI	CCNNNNNNNGG	2 cut(s)	113, 734
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	1 cut(s)	720
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	321
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	2 cut(s)	377, 724
BsiSI	CCGG	5 cut(s)	84, 350, 375, 381, 806
BslI	CCNNNNNNNGG	2 cut(s)	113, 734
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	6 cut(s)	452, 484, 664, 760, 837, 871
BspACI	CCGC	3 cut(s)	15, 24, 113
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	348, 379, 726
BspMAI	CTGCAG	1 cut(s)	440
BspPI	GGATC	3 cut(s)	460, 479, 866
BspT107I	GGYRCC	2 cut(s)	377, 724
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	3 cut(s)	83, 349, 805
BsrI	ACTGG	1 cut(s)	720
BssAI	RCCGGY	3 cut(s)	83, 349, 805
BssECI	CCNNGG	3 cut(s)	223, 692, 729
BssMI	GATC	6 cut(s)	452, 484, 664, 760, 837, 871
BssNI	GRCGYC	1 cut(s)	725
BssT1I	CCWWGG	1 cut(s)	692
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	335, 478
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	725
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	3 cut(s)	463, 739, 895
BstH2I	RGCGCY	2 cut(s)	248, 728
BstHHI	GCGC	3 cut(s)	197, 247, 727
BstKTI	GATC	6 cut(s)	455, 487, 667, 763, 840, 874
BstMBI	GATC	6 cut(s)	452, 484, 664, 760, 837, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 203
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	2 cut(s)	58, 417
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	3 cut(s)	463, 739, 895
BtsIMutI	CAGTG	2 cut(s)	165, 483
Cac8I	GCNNGC	1 cut(s)	807
CaiI	CAGNNNCTG	1 cut(s)	444
CfoI	GCGC	3 cut(s)	197, 247, 727
Cfr10I	RCCGGY	3 cut(s)	83, 349, 805
Cfr13I	GGNCC	4 cut(s)	86, 135, 188, 214
Csp6I	GTAC	3 cut(s)	64, 301, 378
CviAII	CATG	5 cut(s)	55, 61, 407, 414, 750
CviQI	GTAC	3 cut(s)	64, 301, 378
DdeI	CTNAG	1 cut(s)	504
DinI	GGCGCC	1 cut(s)	726
DpnI	GATC	6 cut(s)	454, 486, 666, 762, 839, 873
DpnII	GATC	6 cut(s)	452, 484, 664, 760, 837, 871
DriI	GACNNNNNGTC	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	30
Eam1105I	GACNNNNNGTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	692
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	3 cut(s)	86, 135, 188
Eco47III	AGCGCT	1 cut(s)	246
Eco57I	CTGAAG	3 cut(s)	53, 124, 225
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	223
EgeI	GGCGCC	1 cut(s)	726
EheI	GGCGCC	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	5 cut(s)	58, 64, 410, 417, 753
FatI	CATG	5 cut(s)	54, 60, 406, 413, 749
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	3 cut(s)	470, 746, 902
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	3 cut(s)	326, 768, 885
GlaI	GCGC	3 cut(s)	196, 246, 726
GluI	GCNGC	1 cut(s)	310
HaeII	RGCGCY	2 cut(s)	248, 728
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	5 cut(s)	84, 350, 375, 381, 806
HhaI	GCGC	3 cut(s)	197, 247, 727
Hin1I	GRCGYC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	58, 64, 410, 417, 753
Hin6I	GCGC	3 cut(s)	195, 245, 725
HinP1I	GCGC	3 cut(s)	195, 245, 725
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	4 cut(s)	510, 557, 669, 923
HpaII	CCGG	5 cut(s)	84, 350, 375, 381, 806
HphI	GGTGA	3 cut(s)	172, 674, 929
Hpy166II	GTNNAC	3 cut(s)	288, 481, 867
Hpy188I	TCNGA	5 cut(s)	457, 578, 631, 674, 935
Hpy188III	TCNNGA	3 cut(s)	71, 773, 853
Hpy8I	GTNNAC	3 cut(s)	288, 481, 867
HpyAV	CCTTC	7 cut(s)	77, 148, 179, 573, 589, 787, 825
HpyCH4III	ACNGT	2 cut(s)	335, 478
HpyCH4IV	ACGT	3 cut(s)	431, 552, 910
HpyCH4V	TGCA	2 cut(s)	413, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 203
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	3 cut(s)	431, 552, 910
Hsp92I	GRCGYC	1 cut(s)	725
Hsp92II	CATG	5 cut(s)	58, 64, 410, 417, 753
HspAI	GCGC	3 cut(s)	195, 245, 725
KasI	GGCGCC	1 cut(s)	724
KpnI	GGTACC	1 cut(s)	381
KroI	GCCGGC	1 cut(s)	805
KroNI	GCCGGC	1 cut(s)	807
Kzo9I	GATC	6 cut(s)	452, 484, 664, 760, 837, 871
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	1 cut(s)	321
MaeI	CTAG	3 cut(s)	326, 768, 885
MaeII	ACGT	3 cut(s)	431, 552, 910
MaeIII	GTNAC	4 cut(s)	163, 472, 678, 880
MalI	GATC	6 cut(s)	454, 486, 666, 762, 839, 873
MboI	GATC	6 cut(s)	452, 484, 664, 760, 837, 871
MboII	GAAGA	3 cut(s)	47, 556, 847
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	146, 706, 776
Mly113I	GGCGCC	1 cut(s)	725
MlyI	GAGTC	1 cut(s)	663
MnlI	CCTC	7 cut(s)	395, 434, 443, 592, 652, 907, 913
MreI	CGCCGGCG	1 cut(s)	805
MroNI	GCCGGC	1 cut(s)	805
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	5 cut(s)	84, 350, 375, 381, 806
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	119, 203
NaeI	GCCGGC	1 cut(s)	807
NarI	GGCGCC	1 cut(s)	725
NdeII	GATC	6 cut(s)	452, 484, 664, 760, 837, 871
NgoMIV	GCCGGC	1 cut(s)	805
NlaIII	CATG	5 cut(s)	58, 64, 410, 417, 753
NlaIV	GGNNCC	3 cut(s)	348, 379, 726
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	163, 880
NspI	RCATGY	2 cut(s)	58, 417
PciI	ACATGT	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	807
PfeI	GAWTC	3 cut(s)	510, 557, 923
PkrI	GCNGC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	663
PluTI	GGCGCC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	663
Ppu21I	YACGTR	1 cut(s)	911
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	348, 379, 726
PspPI	GGNCC	4 cut(s)	86, 135, 188, 214
PstI	CTGCAG	1 cut(s)	440
PstNI	CAGNNNCTG	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	871
RsaI	GTAC	3 cut(s)	65, 302, 379
RsaNI	GTAC	3 cut(s)	64, 301, 378
RseI	CAYNNNNRTG	1 cut(s)	59
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	6 cut(s)	452, 484, 664, 760, 837, 871
Sau96I	GGNCC	4 cut(s)	86, 135, 188, 214
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	436
SfoI	GGCGCC	1 cut(s)	726
SgrAI	CRCCGGYG	1 cut(s)	805
SinI	GGWCC	3 cut(s)	86, 135, 188
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	146, 706, 776
SsiI	CCGC	3 cut(s)	15, 24, 113
SspDI	GGCGCC	1 cut(s)	724
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	3 cut(s)	326, 768, 885
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	2 cut(s)	335, 478
TaiI	ACGT	3 cut(s)	434, 555, 913
TaqI	TCGA	3 cut(s)	667, 759, 926
TasI	AATT	3 cut(s)	146, 706, 776
TatI	WGTACW	1 cut(s)	300
TfiI	GAWTC	3 cut(s)	510, 557, 923
TscAI	CASTG	2 cut(s)	172, 483
TseFI	GTSAC	2 cut(s)	163, 880
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	2 cut(s)	163, 880
TspDTI	ATGAA	2 cut(s)	17, 67
TspGWI	ACGGA	2 cut(s)	267, 746
TspRI	CASTG	2 cut(s)	172, 483
VpaK11BI	GGWCC	3 cut(s)	86, 135, 188
XapI	RAATTY	1 cut(s)	776
XceI	RCATGY	2 cut(s)	58, 417
XspI	CTAG	3 cut(s)	326, 768, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.