pycom09g03590

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001118
Physical Location & Seq
Reverse (-)
2659355 .. 2659918
564 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03590.1

Sequence Viewer

Length: 564 bp
ATGCATCCACTAATGGCGTTAAAATTCATACCAAAGCTCAGTGCTCCATCCTTGTTTTTCGTCATGGTTGTTCTAGCCATGACTACATTTCCAGCGATCCGAGCCACTCACGAGTCTAAGGAAACCCACCTGTCTTTCTACGCTCATGACTTCTTATCTGGTCCAAATATCACAGATGTTGCGTTTGCAGGTATTCCCGGCAAGATTTGGAACTACGATCAATTTGCCACTGTGTATGCAGAGGATGCCCCTTTAACGGAGGGCATAGACCTAAAATCCGCCTCCGTTGGCCGGATACAAGGCATGTTTATGGTAACGTCATTGGATGGACGTAATTCCTATGATATGTTATCAATTATGTTCACAAACAAGGAGTACAATGGAAGCACTCTTCAGATACAAGGAATTGATAAGCAATTCGAGCAACATAGAGAATTATCAGTTGTTTCAGGTACTGGAAAGTTTCGATTTGCTCGAGGATATATTACGTGTAATACGGTTTTTGTGGACCTTCCAAATGCATACTTTGTTACACAATGCAACGTTACAGTGGAACACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

188

Amino Acids

20.96

Weight (kDa)

6.04

Isoelectric Point (pI)

26.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 42 - 184 3e-41 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AciI CCGC 1 cut(s) 279
AclI AACGTT 1 cut(s) 543
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 2 cut(s) 377, 454
AfiI CCNNNNNNNGG 2 cut(s) 256, 291
AflIII ACRYGT 1 cut(s) 488
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 1 cut(s) 289
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 161, 508
AsuC2I CCSGG 1 cut(s) 198
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 2 cut(s) 161, 508
BauI CACGAG 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 2 cut(s) 55, 320
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciVI GTATCC 1 cut(s) 288
BcnI CCSGG 1 cut(s) 198
BfaI CTAG 2 cut(s) 74, 562
BfuAI ACCTGC 1 cut(s) 179
BfuI GTATCC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 2 cut(s) 161, 508
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 161, 508
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 13, 235
BpuMI CCSGG 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 489
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 291
Bse1I ACTGG 1 cut(s) 460
BseGI GGATG 4 cut(s) 4, 47, 250, 331
BseLI CCNNNNNNNGG 2 cut(s) 256, 291
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 460
BshFI GGCC 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 2 cut(s) 198, 292
BslI CCNNNNNNNGG 2 cut(s) 256, 291
BsnI GGCC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 96, 217
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 460
BssMI GATC 2 cut(s) 96, 217
BssSI CACGAG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 232, 499, 550
Bst6I CTCTTC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 38, 117
BstF5I GGATG 4 cut(s) 4, 47, 250, 331
BstKTI GATC 2 cut(s) 99, 220
BstMBI GATC 2 cut(s) 96, 217
BstMWI GCNNNNNNNGC 3 cut(s) 101, 245, 421
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 196
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 4 cut(s) 4, 47, 250, 331
BtsIMutI CAGTG 3 cut(s) 46, 228, 555
BveI ACCTGC 1 cut(s) 179
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 161, 508
Csp6I GTAC 2 cut(s) 376, 453
CviAII CATG 4 cut(s) 64, 79, 146, 304
CviJI RGCY 4 cut(s) 37, 77, 104, 291
CviKI_1 RGCY 4 cut(s) 37, 77, 104, 291
CviQI GTAC 2 cut(s) 376, 453
DdeI CTNAG 2 cut(s) 38, 117
DpnI GATC 2 cut(s) 98, 219
DpnII GATC 2 cut(s) 96, 217
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EciI GGCGGA 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 161, 508
Eco57I CTGAAG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 474
EcoT22I ATGCAT 2 cut(s) 6, 523
FaeI CATG 4 cut(s) 67, 82, 149, 307
FatI CATG 4 cut(s) 63, 78, 145, 303
FokI GGATG 3 cut(s) 34, 257, 338
FspBI CTAG 2 cut(s) 74, 562
HaeIII GGCC 1 cut(s) 291
HapII CCGG 2 cut(s) 198, 292
Hin1II CATG 4 cut(s) 67, 82, 149, 307
HinfI GANTC 1 cut(s) 113
HpaII CCGG 2 cut(s) 198, 292
Hpy166II GTNNAC 2 cut(s) 363, 508
Hpy188I TCNGA 2 cut(s) 101, 396
Hpy188III TCNNGA 2 cut(s) 110, 146
Hpy8I GTNNAC 2 cut(s) 363, 508
HpyAV CCTTC 1 cut(s) 521
HpyCH4III ACNGT 3 cut(s) 232, 499, 550
HpyCH4IV ACGT 4 cut(s) 317, 331, 488, 543
HpyCH4V TGCA 5 cut(s) 4, 188, 239, 521, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 245, 421
HpyF3I CTNAG 2 cut(s) 38, 117
HpySE526I ACGT 4 cut(s) 317, 331, 488, 543
Hsp92II CATG 4 cut(s) 67, 82, 149, 307
Kzo9I GATC 2 cut(s) 96, 217
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 8 cut(s) 105, 143, 144, 174, 211, 305, 435, 441
LweI GCATC 2 cut(s) 13, 235
MaeI CTAG 2 cut(s) 74, 562
MaeII ACGT 4 cut(s) 317, 331, 488, 543
MaeIII GTNAC 3 cut(s) 313, 529, 544
MalI GATC 2 cut(s) 98, 219
MboI GATC 2 cut(s) 96, 217
MboII GAAGA 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 7 cut(s) 23, 221, 334, 354, 405, 416, 434
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 4 cut(s) 235, 253, 292, 470
Mph1103I ATGCAT 2 cut(s) 6, 523
MseI TTAA 2 cut(s) 20, 254
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 2 cut(s) 198, 292
MspR9I CCNGG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 101, 245, 421
NciI CCSGG 1 cut(s) 198
NdeII GATC 2 cut(s) 96, 217
NlaIII CATG 4 cut(s) 67, 82, 149, 307
NsiI ATGCAT 2 cut(s) 6, 523
NspI RCATGY 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 474
PagI TCATGA 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 489
Psp1406I AACGTT 1 cut(s) 543
PspPI GGNCC 2 cut(s) 161, 508
PspXI VCTCGAGB 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 377, 454
RsaNI GTAC 2 cut(s) 376, 453
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 2 cut(s) 20, 254
Sau3AI GATC 2 cut(s) 96, 217
Sau96I GGNCC 2 cut(s) 161, 508
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 13, 235
Sfr274I CTCGAG 1 cut(s) 474
SinI GGWCC 2 cut(s) 161, 508
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 7 cut(s) 23, 221, 334, 354, 405, 416, 434
SsiI CCGC 1 cut(s) 279
SspMI CTAG 2 cut(s) 74, 562
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 232, 499, 550
TaiI ACGT 4 cut(s) 320, 334, 491, 546
TaqI TCGA 3 cut(s) 420, 466, 475
TasI AATT 7 cut(s) 23, 221, 334, 354, 405, 416, 434
TatI WGTACW 1 cut(s) 375
Tru1I TTAA 2 cut(s) 20, 254
Tru9I TTAA 2 cut(s) 20, 254
TscAI CASTG 3 cut(s) 46, 235, 555
TspDTI ATGAA 1 cut(s) 16
TspGWI ACGGA 2 cut(s) 272, 274
TspRI CASTG 3 cut(s) 46, 235, 555
VpaK11BI GGWCC 2 cut(s) 161, 508
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 474
XspI CTAG 2 cut(s) 74, 562
Zsp2I ATGCAT 2 cut(s) 6, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.