pycom09g03530

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001118
Physical Location & Seq
Reverse (-)
2617545 .. 2618108
564 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03530.1

Sequence Viewer

Length: 564 bp
ATGCATCCACTAATGGCGTTAAAATTCATACCAAAGCTCAGTGCTCCATCCATGTTTTTCGTCATGGTTGTTCTAGCCATGACTACATTTCCAGCGATCCAAGCCACTCACGAGTTCAAGGAAACCCACCTGTCTTTCTACATTCATGACTTCTTATCTGGTGCAAATATCACAGATGTTGCGTTTGCAGGTATTCCCGGCAAGATTTGGAACTACGATCAATTTGCCACTGTTTATGCGGAGGATGCCCCTTTAACGGAGGGCATAGATCTAAAATCCGCCTCCGTTGGCCGGATACAAGGCATGTTTATGGTATCGTCATTGGATGGACGTAATGCCTATGATATGTTATCAATTGTGTTCACAAACAAAAAGTACAATGGAAGCACTCTACAGATACAAGGAATTGATAAGCAATTCGAGCAATATAGAGAATTATCAGTGGTTTCAGGTACCGGAAACTTTCGATTTGTTCAGGGATATATTACGTATAAAACGGTTTTTGTGGACCTTCCAAATGCATACTTTGTTACACAATGCAACGTTACAGTGAGACATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

188

Amino Acids

21.08

Weight (kDa)

6.5

Isoelectric Point (pI)

25.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 42 - 184 1.6e-40 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
Acc65I GGTACC 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 452
AciI CCGC 2 cut(s) 239, 279
AclI AACGTT 1 cut(s) 543
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 23
AfaI GTAC 2 cut(s) 377, 454
AfiI CCNNNNNNNGG 2 cut(s) 256, 291
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 1 cut(s) 91
AoxI GGCC 1 cut(s) 289
ApoI RAATTY 1 cut(s) 23
Asp718I GGTACC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 508
AsuC2I CCSGG 1 cut(s) 198
AvaII GGWCC 1 cut(s) 508
BanI GGYRCC 1 cut(s) 452
BauI CACGAG 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 2 cut(s) 55, 320
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciVI GTATCC 1 cut(s) 288
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 179
BfuI GTATCC 1 cut(s) 288
BglII AGATCT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 13, 235
BpuMI CCSGG 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 455
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 291
BseGI GGATG 4 cut(s) 4, 47, 250, 331
BseLI CCNNNNNNNGG 2 cut(s) 256, 291
BseMII CTCAG 1 cut(s) 52
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 3 cut(s) 198, 292, 456
BslI CCNNNNNNNGG 2 cut(s) 256, 291
BsmAI GTCTC 1 cut(s) 547
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 3 cut(s) 96, 217, 268
BspACI CCGC 2 cut(s) 239, 279
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 452
BssMI GATC 3 cut(s) 96, 217, 268
BssSI CACGAG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 110
Bst4CI ACNGT 3 cut(s) 232, 499, 550
BstBAI YACGTR 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 4 cut(s) 4, 47, 250, 331
BstKTI GATC 3 cut(s) 99, 220, 271
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 3 cut(s) 96, 217, 268
BstMWI GCNNNNNNNGC 3 cut(s) 101, 245, 421
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 392
BstSNI TACGTA 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 4 cut(s) 4, 47, 250, 331
BtsIMutI CAGTG 4 cut(s) 46, 228, 447, 555
BveI ACCTGC 1 cut(s) 179
CciI TCATGA 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 2 cut(s) 376, 453
CviAII CATG 5 cut(s) 52, 64, 79, 146, 304
CviJI RGCY 4 cut(s) 37, 77, 104, 291
CviKI_1 RGCY 4 cut(s) 37, 77, 104, 291
CviQI GTAC 2 cut(s) 376, 453
DdeI CTNAG 1 cut(s) 38
DpnI GATC 3 cut(s) 98, 219, 270
DpnII GATC 3 cut(s) 96, 217, 268
EaeI YGGCCR 1 cut(s) 289
EciI GGCGGA 1 cut(s) 268
Eco105I TACGTA 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 508
EcoT22I ATGCAT 2 cut(s) 6, 523
FaeI CATG 5 cut(s) 55, 67, 82, 149, 307
FatI CATG 5 cut(s) 51, 63, 78, 145, 303
FokI GGATG 3 cut(s) 34, 257, 338
FspBI CTAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 291
HapII CCGG 3 cut(s) 198, 292, 456
Hin1II CATG 5 cut(s) 55, 67, 82, 149, 307
HpaII CCGG 3 cut(s) 198, 292, 456
Hpy166II GTNNAC 2 cut(s) 363, 508
Hpy188III TCNNGA 2 cut(s) 110, 146
Hpy8I GTNNAC 2 cut(s) 363, 508
HpyAV CCTTC 1 cut(s) 521
HpyCH4III ACNGT 3 cut(s) 232, 499, 550
HpyCH4IV ACGT 3 cut(s) 331, 488, 543
HpyCH4V TGCA 5 cut(s) 4, 164, 188, 521, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 245, 421
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 3 cut(s) 331, 488, 543
Hsp92II CATG 5 cut(s) 55, 67, 82, 149, 307
KpnI GGTACC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 96, 217, 268
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 9 cut(s) 105, 143, 144, 174, 211, 305, 435, 461, 469
LweI GCATC 2 cut(s) 13, 235
MaeI CTAG 1 cut(s) 74
MaeII ACGT 3 cut(s) 331, 488, 543
MaeIII GTNAC 2 cut(s) 529, 544
MalI GATC 3 cut(s) 98, 219, 270
MboI GATC 3 cut(s) 96, 217, 268
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 6 cut(s) 23, 221, 354, 405, 416, 434
MnlI CCTC 3 cut(s) 235, 253, 292
Mph1103I ATGCAT 2 cut(s) 6, 523
MseI TTAA 2 cut(s) 20, 254
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 3 cut(s) 198, 292, 456
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 101, 245, 421
NciI CCSGG 1 cut(s) 198
NdeII GATC 3 cut(s) 96, 217, 268
NlaIII CATG 5 cut(s) 55, 67, 82, 149, 307
NlaIV GGNNCC 1 cut(s) 454
NsiI ATGCAT 2 cut(s) 6, 523
NspI RCATGY 1 cut(s) 307
PagI TCATGA 1 cut(s) 145
Ppu21I YACGTR 1 cut(s) 489
Psp1406I AACGTT 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 1 cut(s) 508
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 377, 454
RsaNI GTAC 2 cut(s) 376, 453
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 2 cut(s) 20, 254
Sau3AI GATC 3 cut(s) 96, 217, 268
Sau96I GGNCC 1 cut(s) 508
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 46
SetI ASST 8 cut(s) 39, 132, 193, 334, 454, 491, 513, 546
SfaNI GCATC 2 cut(s) 13, 235
SfcI CTRYAG 1 cut(s) 392
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 308
SnaBI TACGTA 1 cut(s) 489
Sse9I AATT 6 cut(s) 23, 221, 354, 405, 416, 434
SsiI CCGC 2 cut(s) 239, 279
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 232, 499, 550
TaiI ACGT 3 cut(s) 334, 491, 546
TaqI TCGA 2 cut(s) 420, 466
TasI AATT 6 cut(s) 23, 221, 354, 405, 416, 434
TatI WGTACW 1 cut(s) 375
Tru1I TTAA 2 cut(s) 20, 254
Tru9I TTAA 2 cut(s) 20, 254
TscAI CASTG 4 cut(s) 46, 235, 447, 555
TspDTI ATGAA 2 cut(s) 16, 134
TspGWI ACGGA 2 cut(s) 272, 274
TspRI CASTG 4 cut(s) 46, 235, 447, 555
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 307
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 2 cut(s) 6, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.