Rh2DG561800

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001118
Physical Location & Seq
Reverse (-)
79071848 .. 79072384
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG561800.1

Sequence Viewer

Length: 537 bp
ATGGCATTAAACTATATACCCAAGTTACTGTTGGTCCTGGTTCTAACCATGACTACATTTTCCGCCATAGGCGGTAGCTGTGAAGAGTTCAAAGAAACCCACATGTCCATGTACCTTCAGGACTTCATTGCCGGTCCAAATATCACAGACATACCGATTGCGGGTGTCGCTGGAAAGCTTTGGACCTTCAGTCAATTTGGAACATATTATGTCACTGACAACCCTATCACCGAAGGTCCAAGCGCACAATCGGCAGAAGTGGGCCGAGCCCCAGGTATTTTTGTGGCTTCAGCGCTGGACGGATTTAGTGGTCTTGTTCTGTTTTCAGTTGTGTTCACGAACAAGGAGTACAATGGCAGCACCATTGAGATACTAGGAAACAGTAAGATAATGGAGCCGGTTAGAGAACTTTCGGTGGTATCCGGTACCGGAAAGTTTCGTTTTGCCAGAGGCTATGCTACGTGTGAAACCTATTTTCTGGACATTCCGAAATCATACTCAGTTATTCGATTCAACATTACAGTGCAACACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

178

Amino Acids

19.47

Weight (kDa)

5.67

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 33 - 175 4.4e-45 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 3 cut(s) 63, 72, 161
AcuI CTGAAG 3 cut(s) 101, 172, 273
AfaI GTAC 3 cut(s) 113, 350, 427
AfeI AGCGCT 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 161
AflIII ACRYGT 2 cut(s) 102, 461
AgsI TTSAA 2 cut(s) 91, 514
AhdI GACNNNNNGTC 1 cut(s) 189
AjnI CCWGG 2 cut(s) 36, 271
AluBI AGCT 2 cut(s) 78, 178
AluI AGCT 2 cut(s) 78, 178
Aor51HI AGCGCT 1 cut(s) 294
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 357
Asp718I GGTACC 1 cut(s) 425
AspLEI GCGC 2 cut(s) 245, 295
AspS9I GGNCC 5 cut(s) 34, 134, 183, 236, 262
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 4 cut(s) 34, 134, 183, 236
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 369
BciT130I CCWGG 2 cut(s) 38, 273
BciVI GTATCC 1 cut(s) 430
BfaI CTAG 1 cut(s) 374
BfoI RGCGCY 1 cut(s) 296
BfuI GTATCC 1 cut(s) 430
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 38, 273
Bme18I GGWCC 4 cut(s) 34, 134, 183, 236
BmeRI GACNNNNNGTC 1 cut(s) 189
BmgT120I GGNCC 5 cut(s) 34, 134, 183, 236, 262
BmiI GGNNCC 2 cut(s) 396, 427
BmrFI CCNGG 2 cut(s) 38, 273
BsaAI YACGTR 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 2 cut(s) 422, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse118I RCCGGY 2 cut(s) 131, 397
Bse3DI GCAATG 1 cut(s) 126
BseBI CCWGG 2 cut(s) 38, 273
BseDI CCNNGG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 513
BseXI GCAGC 1 cut(s) 369
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 425
BsiSI CCGG 4 cut(s) 132, 398, 423, 429
BslI CCNNNNNNNGG 1 cut(s) 161
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 271
BspACI CCGC 3 cut(s) 63, 72, 161
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 512
BspLI GGNNCC 2 cut(s) 396, 427
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 126
BsrFI RCCGGY 2 cut(s) 131, 397
BssAI RCCGGY 2 cut(s) 131, 397
BssECI CCNNGG 1 cut(s) 271
Bst2UI CCWGG 2 cut(s) 38, 273
Bst4CI ACNGT 3 cut(s) 30, 383, 523
Bst6I CTCTTC 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 499
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 2 cut(s) 245, 295
BstMWI GCNNNNNNNGC 2 cut(s) 167, 251
BstNI CCWGG 2 cut(s) 38, 273
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 36, 271
BstV1I GCAGC 1 cut(s) 369
BsuI GTATCC 1 cut(s) 430
BsuRI GGCC 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 213, 528
CfoI GCGC 2 cut(s) 245, 295
Cfr10I RCCGGY 2 cut(s) 131, 397
Cfr13I GGNCC 5 cut(s) 34, 134, 183, 236, 262
Csp6I GTAC 3 cut(s) 112, 349, 426
CviAII CATG 3 cut(s) 49, 103, 109
CviJI RGCY 7 cut(s) 78, 178, 264, 269, 287, 397, 453
CviKI_1 RGCY 7 cut(s) 78, 178, 264, 269, 287, 397, 453
CviQI GTAC 3 cut(s) 112, 349, 426
DdeI CTNAG 1 cut(s) 499
DriI GACNNNNNGTC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 78
EciI GGCGGA 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 271
Eco47I GGWCC 4 cut(s) 34, 134, 183, 236
Eco47III AGCGCT 1 cut(s) 294
Eco57I CTGAAG 3 cut(s) 101, 172, 273
EcoRII CCWGG 2 cut(s) 36, 271
EcoT38I GRGCYC 1 cut(s) 271
FaeI CATG 3 cut(s) 52, 106, 112
FatI CATG 3 cut(s) 48, 102, 108
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 1 cut(s) 374
GlaI GCGC 2 cut(s) 244, 294
GluI GCNGC 1 cut(s) 358
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 1 cut(s) 264
HapII CCGG 4 cut(s) 132, 398, 423, 429
HhaI GCGC 2 cut(s) 245, 295
Hin1II CATG 3 cut(s) 52, 106, 112
Hin6I GCGC 2 cut(s) 243, 293
HinP1I GCGC 2 cut(s) 243, 293
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 1 cut(s) 510
HpaII CCGG 4 cut(s) 132, 398, 423, 429
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 3 cut(s) 119, 337, 479
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 125, 196, 227
HpyCH4III ACNGT 3 cut(s) 30, 383, 523
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 1 cut(s) 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 251
HpyF3I CTNAG 1 cut(s) 499
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 3 cut(s) 52, 106, 112
HspAI GCGC 2 cut(s) 243, 293
KpnI GGTACC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 1 cut(s) 369
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 2 cut(s) 24, 211
MboII GAAGA 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 1 cut(s) 194
MnlI CCTC 1 cut(s) 443
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 2 cut(s) 107, 521
MspI CCGG 4 cut(s) 132, 398, 423, 429
MspR9I CCNGG 2 cut(s) 38, 273
MvaI CCWGG 2 cut(s) 38, 273
MwoI GCNNNNNNNGC 2 cut(s) 167, 251
NlaIII CATG 3 cut(s) 52, 106, 112
NlaIV GGNNCC 2 cut(s) 396, 427
NmeAIII GCCGAG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 462
PscI ACATGT 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 36, 271
PspGI CCWGG 2 cut(s) 36, 271
PspN4I GGNNCC 2 cut(s) 396, 427
PspPI GGNCC 5 cut(s) 34, 134, 183, 236, 262
PsrI GAACNNNNNNTAC 2 cut(s) 332, 364
RsaI GTAC 3 cut(s) 113, 350, 427
RsaNI GTAC 3 cut(s) 112, 349, 426
RseI CAYNNNNRTG 2 cut(s) 107, 521
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 358
Sau96I GGNCC 5 cut(s) 34, 134, 183, 236, 262
ScrFI CCNGG 2 cut(s) 38, 273
SduI GDGCHC 1 cut(s) 271
SetI ASST 8 cut(s) 80, 117, 180, 188, 238, 277, 464, 473
SinI GGWCC 4 cut(s) 34, 134, 183, 236
SmiMI CAYNNNNRTG 2 cut(s) 107, 521
Sse9I AATT 1 cut(s) 194
SsiI CCGC 3 cut(s) 63, 72, 161
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 36, 271
TaaI ACNGT 3 cut(s) 30, 383, 523
TaiI ACGT 1 cut(s) 464
TaqI TCGA 1 cut(s) 508
TasI AATT 1 cut(s) 194
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 2 cut(s) 220, 528
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 2 cut(s) 220, 528
VpaK11BI GGWCC 4 cut(s) 34, 134, 183, 236
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.