Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001118

Physical Location & Seq

Genomic Coordinates Reverse (-)

8487478 .. 8487990

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1111600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTTTTCGTCATGGTTGTTCTAGCCATGACTACATTTCCAGCAATCCAAGCCACTCACGAGTTCAAGGAAACCCTCCTGTCTTTCTACGCTCATGACTTCTTATCTGGTGCAAATATCACTGATGTTGCGTTTGCAGGTATTCCCGGCAAGATTTGGAACTACGATCAATTTGCCACTGTTTATGCGGAGGATGCCCCTTTAACGGAGGGCATAGACCTAAAATCCGCCTCCGTTGGCCGGATACAAGGCATGTTTATGGTATCGTCATTGGATGGACGTAATGCCTATGATATGTTATCAATTGTATTCACAAACAAGAAGTACAATGGAAGCACTCTACAGATACAGGGAATTGATAAGCAATTCGAGCAATATAGAGAATTATCGGTGGTTTCAGGTACCGGACAGTTTCGATTTGTTCAGGGATATATTACATATAAAACGGTTTTTGTGGACCTTCCAAATGCATACTTTGTTACACAATGCAACGTCACAGTGAAACACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

171

Amino Acids

19.13

Weight (kDa)

5.51

Isoelectric Point (pI)

21.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	26 - 167	1.7e-39	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42490 FvH4_6g42500 FvH4_6g42510 FvH4_6g42930 FvH4_7g31480
malus_domestica	MD09G1070400.v1.1 MD09G1111300.v1.1 MD09G1111600.v1.1
prunus_persica	Prupe.3G215100_v2.0.a1 Prupe.3G215500_v2.0.a1 Prupe.3G215600_v2.0.a1
pyrus_communis	pycom09g03340 pycom09g03530 pycom09g03590
rosa_chinensis	RchiOBHm_Chr2g0158861 RchiOBHm_Chr2g0158891 RchiOBHm_Chr2g0158911
rosa_laevigata	RLG00000021118 RLG00000021121 RLG00000021122 RLG00000021123
rosa_multiflora	Rmu_sc0002267.1_g000001 Rmu_sc0002267.1_g000002 Rmu_sc0002267.1_g000003 Rmu_sc0002267.1_g000009 Rmu_sc0002267.1_g000013 Rmu_sc0014404.1_g000006 Rmu_sc0014404.1_g000009 Rmu_sc0014404.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090880 Rroxscaffold_2G00090950
rosa_rugosa	Rorug02G0467800 Rorug02G0468200 Rorug02G0473000 Rorug02G0473000 Rorug02G0473000
rosa_samantha	Rh2AG533900 Rh2AG534200 Rh2AG539000 Rh2AG539200 Rh2BG547600 Rh2BG547700 Rh2BG551600 Rh2BG552000 Rh2BG552100 Rh2BG552200 Rh2CG517900 Rh2CG518100 Rh2CG522300 Rh2CG522600 Rh2DG557200 Rh2DG557300 Rh2DG561400 Rh2DG561800 Rh2DG562000
rosa_wichuraiana	Rw2G044240 Rw2G044600 Rw2G044630 Rw2G044640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	2 cut(s)	188, 228
AcoI	YGGCCR	1 cut(s)	238
AfaI	GTAC	2 cut(s)	326, 403
AfiI	CCNNNNNNNGG	2 cut(s)	205, 240
AgsI	TTSAA	1 cut(s)	67
AoxI	GGCC	1 cut(s)	238
Asp718I	GGTACC	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	59
BccI	CCATC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciVI	GTATCC	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	147
BfaI	CTAG	2 cut(s)	23, 511
BfmI	CTRYAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 240
BseGI	GGATG	2 cut(s)	199, 280
BseLI	CCNNNNNNNGG	2 cut(s)	205, 240
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	401
BsiSI	CCGG	3 cut(s)	147, 241, 405
BslI	CCNNNNNNNGG	2 cut(s)	205, 240
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	188, 228
BspANI	GGCC	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	401
BssMI	GATC	1 cut(s)	166
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	181, 411, 448, 499
BstF5I	GGATG	2 cut(s)	199, 280
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 194, 370
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	199, 280
BtsIMutI	CAGTG	3 cut(s)	120, 177, 504
BveI	ACCTGC	1 cut(s)	128
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	325, 402
CviAII	CATG	4 cut(s)	13, 28, 95, 253
CviJI	RGCY	3 cut(s)	26, 53, 240
CviKI_1	RGCY	3 cut(s)	26, 53, 240
CviQI	GTAC	2 cut(s)	325, 402
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	472
FaeI	CATG	4 cut(s)	16, 31, 98, 256
FatI	CATG	4 cut(s)	12, 27, 94, 252
FokI	GGATG	2 cut(s)	206, 287
FspBI	CTAG	2 cut(s)	23, 511
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	3 cut(s)	147, 241, 405
Hin1II	CATG	4 cut(s)	16, 31, 98, 256
HpaII	CCGG	3 cut(s)	147, 241, 405
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188III	TCNNGA	2 cut(s)	59, 95
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	470
HpyCH4III	ACNGT	4 cut(s)	181, 411, 448, 499
HpyCH4IV	ACGT	2 cut(s)	280, 492
HpyCH4V	TGCA	4 cut(s)	113, 137, 470, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 194, 370
HpySE526I	ACGT	2 cut(s)	280, 492
Hsp92II	CATG	4 cut(s)	16, 31, 98, 256
KpnI	GGTACC	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	166
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	23, 511
MaeII	ACGT	2 cut(s)	280, 492
MaeIII	GTNAC	2 cut(s)	478, 493
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MfeI	CAATTG	1 cut(s)	303
MluCI	AATT	5 cut(s)	170, 303, 354, 365, 383
MnlI	CCTC	4 cut(s)	86, 184, 202, 241
Mph1103I	ATGCAT	1 cut(s)	472
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	3 cut(s)	147, 241, 405
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	50, 194, 370
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	4 cut(s)	16, 31, 98, 256
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	1 cut(s)	256
PagI	TCATGA	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	457
RsaI	GTAC	2 cut(s)	326, 403
RsaNI	GTAC	2 cut(s)	325, 402
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	457
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	6 cut(s)	142, 222, 283, 403, 462, 495
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	341
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	5 cut(s)	170, 303, 354, 365, 383
SsiI	CCGC	2 cut(s)	188, 228
SspMI	CTAG	2 cut(s)	23, 511
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	4 cut(s)	181, 411, 448, 499
TaiI	ACGT	2 cut(s)	283, 495
TaqI	TCGA	2 cut(s)	369, 415
TasI	AATT	5 cut(s)	170, 303, 354, 365, 383
TatI	WGTACW	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	3 cut(s)	127, 184, 504
TseFI	GTSAC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	493
TspGWI	ACGGA	2 cut(s)	221, 223
TspRI	CASTG	3 cut(s)	127, 184, 504
VpaK11BI	GGWCC	1 cut(s)	457
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	2 cut(s)	23, 511
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.