Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001118

Physical Location & Seq

Genomic Coordinates Reverse (-)

8461811 .. 8462476

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1111300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCATCCACTAATGGCGTTAAAATTCATACCAAAGCTCAGCGCTCCATCCATGTTTTTCGTCATGGTTATTCTAGCCATGACTACATTTCCAGCGATCCGAGCCACTCACGAGTTCAAGGAAACCCACCTGTCTTTCTACGCTCATGACTTCTTATCTGGTGCAAATATCACAGATGTTGCGTTTGCAGGTATTCCCGGCAAGACTTGGAACTACAATCAATTTGCCACTGTTTATGCGGAGGATGCCCCTTTAACGGAGGGCATGGACCTAAAATCCGCCTCCGTTGGCCGGATACAAGGCATGTTTATGGTATCGTCATTGGATGGACGTAATTCCTACGATATGTTATCAATTTTATTCACAAACAAGAAGTACAATGGAAGCACTCTACAGATACAAGGAATTGATAAGCAATTCGAGCAACATAGAGAATTATCGGTTGTTTCAGGTACCGGAAAGTTTCGATTTGTTCGAGGATTTATTACGTGTAATACGGTTTTTGTGGACATTCCAAATGCATATTTTGTTACACAATGCAACGTTACAGTAAAAAACACTACTAGCAAAGAATCACGTATGTTGGTTATACTATGTATCTATGATGAAACACTATTAGCAAAAAATTACGTGTATTGGTTATACTATGTATCTATGAACATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

222

Amino Acids

25.04

Weight (kDa)

8.35

Isoelectric Point (pI)

27.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	42 - 184	4.3e-40	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42490 FvH4_6g42500 FvH4_6g42510 FvH4_6g42930 FvH4_7g31480
malus_domestica	MD09G1070400.v1.1 MD09G1111300.v1.1 MD09G1111600.v1.1
prunus_persica	Prupe.3G215100_v2.0.a1 Prupe.3G215500_v2.0.a1 Prupe.3G215600_v2.0.a1
pyrus_communis	pycom09g03340 pycom09g03530 pycom09g03590
rosa_chinensis	RchiOBHm_Chr2g0158861 RchiOBHm_Chr2g0158891 RchiOBHm_Chr2g0158911
rosa_laevigata	RLG00000021118 RLG00000021121 RLG00000021122 RLG00000021123
rosa_multiflora	Rmu_sc0002267.1_g000001 Rmu_sc0002267.1_g000002 Rmu_sc0002267.1_g000003 Rmu_sc0002267.1_g000009 Rmu_sc0002267.1_g000013 Rmu_sc0014404.1_g000006 Rmu_sc0014404.1_g000009 Rmu_sc0014404.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090880 Rroxscaffold_2G00090950
rosa_rugosa	Rorug02G0467800 Rorug02G0468200 Rorug02G0473000 Rorug02G0473000 Rorug02G0473000
rosa_samantha	Rh2AG533900 Rh2AG534200 Rh2AG539000 Rh2AG539200 Rh2BG547600 Rh2BG547700 Rh2BG551600 Rh2BG552000 Rh2BG552100 Rh2BG552200 Rh2CG517900 Rh2CG518100 Rh2CG522300 Rh2CG522600 Rh2DG557200 Rh2DG557300 Rh2DG561400 Rh2DG561800 Rh2DG562000
rosa_wichuraiana	Rw2G044240 Rw2G044600 Rw2G044630 Rw2G044640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	452
AciI	CCGC	2 cut(s)	239, 279
AclI	AACGTT	1 cut(s)	543
AclWI	GGATC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	23
AfaI	GTAC	2 cut(s)	377, 454
AfeI	AGCGCT	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	256, 291
AflIII	ACRYGT	2 cut(s)	488, 630
AgsI	TTSAA	1 cut(s)	118
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AlwI	GGATC	1 cut(s)	91
Aor51HI	AGCGCT	1 cut(s)	43
AoxI	GGCC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	110
BccI	CCATC	2 cut(s)	55, 320
BciVI	GTATCC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	2 cut(s)	74, 564
BfmI	CTRYAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	288
BlpI	GCTNAGC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	13, 235
Bpu1102I	GCTNAGC	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	3 cut(s)	489, 578, 631
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 291
BseGI	GGATG	4 cut(s)	4, 47, 250, 331
BseLI	CCNNNNNNNGG	2 cut(s)	256, 291
BseMII	CTCAG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	291
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	3 cut(s)	198, 292, 456
BslI	CCNNNNNNNGG	2 cut(s)	256, 291
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	96
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	2 cut(s)	239, 279
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	51
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	452
BssMI	GATC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	232, 499, 550
BstBAI	YACGTR	3 cut(s)	489, 578, 631
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	4 cut(s)	4, 47, 250, 331
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 245, 421
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	291
BtsCI	GGATG	4 cut(s)	4, 47, 250, 331
BtsIMutI	CAGTG	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	179
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	376, 453
CviAII	CATG	6 cut(s)	52, 64, 79, 146, 265, 304
CviJI	RGCY	4 cut(s)	37, 77, 104, 291
CviKI_1	RGCY	4 cut(s)	37, 77, 104, 291
CviQI	GTAC	2 cut(s)	376, 453
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	268
Eco47III	AGCGCT	1 cut(s)	43
EcoT22I	ATGCAT	2 cut(s)	6, 523
FaeI	CATG	6 cut(s)	55, 67, 82, 149, 268, 307
FatI	CATG	6 cut(s)	51, 63, 78, 145, 264, 303
FokI	GGATG	3 cut(s)	34, 257, 338
FspBI	CTAG	2 cut(s)	74, 564
GlaI	GCGC	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	3 cut(s)	198, 292, 456
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	55, 67, 82, 149, 268, 307
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	572
HpaII	CCGG	3 cut(s)	198, 292, 456
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	110, 146
Hpy8I	GTNNAC	1 cut(s)	508
HpyCH4III	ACNGT	3 cut(s)	232, 499, 550
HpyCH4IV	ACGT	5 cut(s)	331, 488, 543, 577, 630
HpyCH4V	TGCA	5 cut(s)	4, 164, 188, 521, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 245, 421
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	5 cut(s)	331, 488, 543, 577, 630
Hsp92II	CATG	6 cut(s)	55, 67, 82, 149, 268, 307
HspAI	GCGC	1 cut(s)	42
KpnI	GGTACC	1 cut(s)	456
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	8 cut(s)	105, 143, 144, 174, 211, 305, 435, 469
LweI	GCATC	2 cut(s)	13, 235
MaeI	CTAG	2 cut(s)	74, 564
MaeII	ACGT	5 cut(s)	331, 488, 543, 577, 630
MaeIII	GTNAC	2 cut(s)	529, 544
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MluCI	AATT	8 cut(s)	23, 221, 334, 354, 405, 416, 434, 625
MnlI	CCTC	4 cut(s)	235, 253, 292, 470
Mph1103I	ATGCAT	2 cut(s)	6, 523
MseI	TTAA	2 cut(s)	20, 254
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	3 cut(s)	198, 292, 456
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	101, 245, 421
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	6 cut(s)	55, 67, 82, 149, 268, 307
NlaIV	GGNNCC	1 cut(s)	454
NsiI	ATGCAT	2 cut(s)	6, 523
NspI	RCATGY	1 cut(s)	307
PagI	TCATGA	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	572
Ppu21I	YACGTR	3 cut(s)	489, 578, 631
Psp1406I	AACGTT	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	268
RsaI	GTAC	2 cut(s)	377, 454
RsaNI	GTAC	2 cut(s)	376, 453
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	20, 254
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	198
SfaNI	GCATC	2 cut(s)	13, 235
SfcI	CTRYAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	8 cut(s)	23, 221, 334, 354, 405, 416, 434, 625
SsiI	CCGC	2 cut(s)	239, 279
SspMI	CTAG	2 cut(s)	74, 564
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	232, 499, 550
TaiI	ACGT	5 cut(s)	334, 491, 546, 580, 633
TaqI	TCGA	3 cut(s)	420, 466, 475
TasI	AATT	8 cut(s)	23, 221, 334, 354, 405, 416, 434, 625
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	20, 254
Tru9I	TTAA	2 cut(s)	20, 254
TscAI	CASTG	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	16, 621
TspGWI	ACGGA	2 cut(s)	272, 274
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	1 cut(s)	307
XspI	CTAG	2 cut(s)	74, 564
Zsp2I	ATGCAT	2 cut(s)	6, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.