Rroxscaffold_2G00090880

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001118
Physical Location & Seq
Forward (+)
12583919 .. 12584455
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090880.1

Sequence Viewer

Length: 537 bp
ATGGCATTAAACTTGATACCCAAGTTGCTGTTGGTCCTGATTCTATCCATGACTACATTTTCCGCCAGAGCCAGTAGCAGTAAAGAGTACAAAGAAACCCACATGTCCATGTACCTTCAGGACTTCCTTACTGGTCCAAATGTCACAGATATACCAGTTGCGGGTGTCGCTGGAAAGCTTTGGGCCTTCAATCAATTTGGAACACTTTATGTCAATGACAACCCTCTCACCGAAGGCCCAAGCCCACAATCGGCAGAGGTGGGCCGAGCCCCAGGTATTTTTATGGCTTCAGCACTGGACGGATCTAGTGGCCTTGTTGTGTTTTCAGTTGTGTTCACAAACAAGGAGTACAATGGCAGCACCATAGAGATACTAGGAAACAGCAAGATACTGGACCCGGTTAGAGAGCTTTCGGTGGCATCCGGTACCGGAAAGTTTCGGTTTGCTAGAGGGTACGCTACGCTTGAAACCTATTTTCTGGACATTCAGAGAGCATACTCGATTGTACGACTCAACATAACAGTGGAACACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

178

Amino Acids

19.41

Weight (kDa)

6.73

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 33 - 175 3.3e-44 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 2 cut(s) 63, 161
AclWI GGATC 1 cut(s) 310
AcuI CTGAAG 2 cut(s) 101, 273
AfaI GTAC 6 cut(s) 89, 113, 350, 427, 455, 507
AfiI CCNNNNNNNGG 2 cut(s) 161, 250
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 2 cut(s) 190, 467
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 2 cut(s) 178, 409
AluI AGCT 2 cut(s) 178, 409
AlwI GGATC 1 cut(s) 310
AoxI GGCC 4 cut(s) 183, 235, 262, 310
ApeKI GCWGC 1 cut(s) 357
Asp718I GGTACC 1 cut(s) 425
AspS9I GGNCC 6 cut(s) 34, 134, 183, 236, 262, 394
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 3 cut(s) 34, 134, 394
BaeI ACNNNNGTAYC 2 cut(s) 8, 41
BanI GGYRCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 271
BbvI GCAGC 1 cut(s) 369
BciT130I CCWGG 1 cut(s) 273
BcnI CCSGG 1 cut(s) 398
BfaI CTAG 3 cut(s) 306, 374, 447
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 273, 398
Bme18I GGWCC 3 cut(s) 34, 134, 394
BmgT120I GGNCC 6 cut(s) 34, 134, 183, 236, 262, 394
BmiI GGNNCC 2 cut(s) 396, 427
BmrFI CCNGG 2 cut(s) 273, 398
BmsI GCATC 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 2 cut(s) 422, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 250
Bse1I ACTGG 5 cut(s) 72, 136, 155, 300, 396
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 161, 250
BseNI ACTGG 5 cut(s) 72, 136, 155, 300, 396
BseXI GCAGC 1 cut(s) 369
BshFI GGCC 4 cut(s) 185, 237, 264, 312
BshNI GGYRCC 1 cut(s) 425
BsiSI CCGG 3 cut(s) 398, 423, 429
BslI CCNNNNNNNGG 2 cut(s) 161, 250
BsnI GGCC 4 cut(s) 185, 237, 264, 312
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 2 cut(s) 63, 161
BspANI GGCC 4 cut(s) 185, 237, 264, 312
BspLI GGNNCC 2 cut(s) 396, 427
BspPI GGATC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 425
BsrI ACTGG 5 cut(s) 72, 136, 155, 300, 396
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 523
BstF5I GGATG 1 cut(s) 419
BstKTI GATC 1 cut(s) 305
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 271, 396
BstV1I GCAGC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 4 cut(s) 185, 237, 264, 312
BtsCI GGATG 1 cut(s) 419
BtsIMutI CAGTG 2 cut(s) 293, 528
Cfr13I GGNCC 6 cut(s) 34, 134, 183, 236, 262, 394
Csp6I GTAC 6 cut(s) 88, 112, 349, 426, 454, 506
CviAII CATG 3 cut(s) 49, 103, 109
CviQI GTAC 6 cut(s) 88, 112, 349, 426, 454, 506
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 271
Eco47I GGWCC 3 cut(s) 34, 134, 394
Eco57I CTGAAG 2 cut(s) 101, 273
EcoRII CCWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 271
FaeI CATG 3 cut(s) 52, 106, 112
FaiI YATR 9 cut(s) 50, 104, 110, 152, 210, 284, 365, 496, 518
FatI CATG 3 cut(s) 48, 102, 108
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 1 cut(s) 406
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 3 cut(s) 306, 374, 447
GluI GCNGC 1 cut(s) 358
HaeIII GGCC 4 cut(s) 185, 237, 264, 312
HapII CCGG 3 cut(s) 398, 423, 429
Hin1II CATG 3 cut(s) 52, 106, 112
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 40, 510
HpaII CCGG 3 cut(s) 398, 423, 429
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 3 cut(s) 37, 119, 479
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 3 cut(s) 125, 196, 227
HpyCH4III ACNGT 1 cut(s) 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 52, 106, 112
KpnI GGTACC 1 cut(s) 429
Kzo9I GATC 1 cut(s) 302
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 1 cut(s) 428
MaeI CTAG 3 cut(s) 306, 374, 447
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 1 cut(s) 194
MlyI GAGTC 1 cut(s) 504
MnlI CCTC 3 cut(s) 234, 250, 443
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 2 cut(s) 107, 521
MspI CCGG 3 cut(s) 398, 423, 429
MspR9I CCNGG 2 cut(s) 273, 398
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 398
NdeII GATC 1 cut(s) 302
NlaIII CATG 3 cut(s) 52, 106, 112
NlaIV GGNNCC 2 cut(s) 396, 427
NmeAIII GCCGAG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PscI ACATGT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 396, 427
PspPI GGNCC 6 cut(s) 34, 134, 183, 236, 262, 394
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 6 cut(s) 89, 113, 350, 427, 455, 507
RsaNI GTAC 6 cut(s) 88, 112, 349, 426, 454, 506
RseI CAYNNNNRTG 2 cut(s) 107, 521
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 6 cut(s) 34, 134, 183, 236, 262, 394
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 2 cut(s) 273, 398
SduI GDGCHC 1 cut(s) 271
SetI ASST 6 cut(s) 117, 180, 261, 277, 411, 473
SfaNI GCATC 1 cut(s) 428
SinI GGWCC 3 cut(s) 34, 134, 394
SmiMI CAYNNNNRTG 2 cut(s) 107, 521
Sse9I AATT 1 cut(s) 194
SsiI CCGC 2 cut(s) 63, 161
SspMI CTAG 3 cut(s) 306, 374, 447
StyD4I CCNGG 2 cut(s) 271, 396
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 1 cut(s) 500
TasI AATT 1 cut(s) 194
TatI WGTACW 2 cut(s) 87, 348
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 2 cut(s) 300, 528
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 2 cut(s) 300, 528
VpaK11BI GGWCC 3 cut(s) 34, 134, 394
XceI RCATGY 1 cut(s) 106
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XspI CTAG 3 cut(s) 306, 374, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.