Rmu_sc0002267.1_g000001

Dirigent protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002267.1
OG0001118
Physical Location & Seq
Forward (+)
9054 .. 9542
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002267.1_g000001.1.cds

Sequence Viewer

Length: 489 bp
atgactacattttccgccatagccagtagcagtaaagagtacaaagaaacccacatgtccatgtaccttcaggacttccttaccggtccaaatgtcacagatataccagttgcgggtgtcgctggaaagctttgggccttcaatcaattcggaacactttacgtcaatgacaatcctctcaccgaaggcccaagcccacaatcgtcagaggtgggccgagccccaggtatttttatggcttcagcactggacggatctagtggccttgttgcgttttcagttgtgttcactaacaaggagtacaatggcagcaccatagagatactaggaaacagtaagatattggacccggttagagagctttcggtggcatccggtaccggaaagtttcggtttgctagagggtacgctacgcttgaaacctattttctggacattccgagagcatactcgatcgtacgactcaacataacagtggaacacaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

162

Amino Acids

17.57

Weight (kDa)

5.65

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 2 cut(s) 15, 113
AclWI GGATC 1 cut(s) 262
AcuI CTGAAG 2 cut(s) 53, 225
AfaI GTAC 6 cut(s) 41, 65, 302, 379, 407, 459
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 54
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 142, 419
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 2 cut(s) 130, 361
AluI AGCT 2 cut(s) 130, 361
AlwI GGATC 1 cut(s) 262
AoxI GGCC 4 cut(s) 135, 187, 214, 262
ApeKI GCWGC 1 cut(s) 309
AsiGI ACCGGT 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 377
AspS9I GGNCC 5 cut(s) 86, 135, 188, 214, 346
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 2 cut(s) 86, 346
BanI GGYRCC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 225
BcnI CCSGG 1 cut(s) 350
BfaI CTAG 3 cut(s) 258, 326, 399
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 225, 350
Bme18I GGWCC 2 cut(s) 86, 346
BmgT120I GGNCC 5 cut(s) 86, 135, 188, 214, 346
BmiI GGNNCC 2 cut(s) 348, 379
BmrFI CCNGG 2 cut(s) 225, 350
BmsI GCATC 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 3 cut(s) 83, 374, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 24, 107, 252
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 113
BseNI ACTGG 3 cut(s) 24, 107, 252
BseXI GCAGC 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 4 cut(s) 137, 189, 216, 264
BshNI GGYRCC 1 cut(s) 377
BshTI ACCGGT 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 456
BsiSI CCGG 4 cut(s) 84, 350, 375, 381
BsiWI CGTACG 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 113
BsnI GGCC 4 cut(s) 137, 189, 216, 264
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 2 cut(s) 254, 453
BspACI CCGC 2 cut(s) 15, 113
BspANI GGCC 4 cut(s) 137, 189, 216, 264
BspLI GGNNCC 2 cut(s) 348, 379
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 1 cut(s) 377
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 3 cut(s) 24, 107, 252
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 254, 453
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 335, 475
BstF5I GGATG 1 cut(s) 371
BstKTI GATC 2 cut(s) 257, 456
BstMBI GATC 2 cut(s) 254, 453
BstMCI CGRYCG 1 cut(s) 456
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 223, 348
BstV1I GCAGC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 4 cut(s) 137, 189, 216, 264
BtsCI GGATG 1 cut(s) 371
BtsIMutI CAGTG 2 cut(s) 245, 480
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 5 cut(s) 86, 135, 188, 214, 346
Csp6I GTAC 6 cut(s) 40, 64, 301, 378, 406, 458
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 2 cut(s) 55, 61
CviQI GTAC 6 cut(s) 40, 64, 301, 378, 406, 458
DpnI GATC 2 cut(s) 256, 455
DpnII GATC 2 cut(s) 254, 453
EciI GGCGGA 1 cut(s) 4
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 86, 346
Eco57I CTGAAG 2 cut(s) 53, 225
EcoRII CCWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 223
FaeI CATG 2 cut(s) 58, 64
FaiI YATR 8 cut(s) 20, 56, 62, 104, 236, 317, 448, 470
FatI CATG 2 cut(s) 54, 60
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 310
FokI GGATG 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 310
FspBI CTAG 3 cut(s) 258, 326, 399
GluI GCNGC 1 cut(s) 310
HaeIII GGCC 4 cut(s) 137, 189, 216, 264
HapII CCGG 4 cut(s) 84, 350, 375, 381
Hin1II CATG 2 cut(s) 58, 64
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 462
HpaII CCGG 4 cut(s) 84, 350, 375, 381
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 3 cut(s) 152, 208, 441
Hpy188III TCNNGA 2 cut(s) 71, 431
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 77, 148, 179
HpyCH4III ACNGT 2 cut(s) 335, 475
HpyCH4IV ACGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 58, 64
KpnI GGTACC 1 cut(s) 381
Kzo9I GATC 2 cut(s) 254, 453
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 1 cut(s) 380
MaeI CTAG 3 cut(s) 258, 326, 399
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 94
MalI GATC 2 cut(s) 256, 455
MboI GATC 2 cut(s) 254, 453
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 1 cut(s) 146
MlyI GAGTC 1 cut(s) 456
MnlI CCTC 3 cut(s) 186, 202, 395
MslI CAYNNNNRTG 2 cut(s) 59, 473
MspI CCGG 4 cut(s) 84, 350, 375, 381
MspR9I CCNGG 2 cut(s) 225, 350
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 119
NciI CCSGG 1 cut(s) 350
NdeII GATC 2 cut(s) 254, 453
NlaIII CATG 2 cut(s) 58, 64
NlaIV GGNNCC 2 cut(s) 348, 379
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 58
PciI ACATGT 1 cut(s) 54
Pfl23II CGTACG 1 cut(s) 457
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 1 cut(s) 311
Ple19I CGATCG 1 cut(s) 456
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
PscI ACATGT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspLI CGTACG 1 cut(s) 457
PspN4I GGNNCC 2 cut(s) 348, 379
PspPI GGNCC 5 cut(s) 86, 135, 188, 214, 346
PsuI RGATCY 1 cut(s) 254
PvuI CGATCG 1 cut(s) 456
RsaI GTAC 6 cut(s) 41, 65, 302, 379, 407, 459
RsaNI GTAC 6 cut(s) 40, 64, 301, 378, 406, 458
RseI CAYNNNNRTG 2 cut(s) 59, 473
SatI GCNGC 1 cut(s) 310
Sau3AI GATC 2 cut(s) 254, 453
Sau96I GGNCC 5 cut(s) 86, 135, 188, 214, 346
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 225, 350
SduI GDGCHC 1 cut(s) 223
SetI ASST 7 cut(s) 69, 132, 165, 213, 229, 363, 425
SfaNI GCATC 1 cut(s) 380
SinI GGWCC 2 cut(s) 86, 346
SmiMI CAYNNNNRTG 2 cut(s) 59, 473
Sse9I AATT 1 cut(s) 146
SsiI CCGC 2 cut(s) 15, 113
SspMI CTAG 3 cut(s) 258, 326, 399
StyD4I CCNGG 2 cut(s) 223, 348
TaaI ACNGT 2 cut(s) 335, 475
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 452
TasI AATT 1 cut(s) 146
TatI WGTACW 2 cut(s) 39, 300
TscAI CASTG 2 cut(s) 252, 480
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 2 cut(s) 252, 480
VpaK11BI GGWCC 2 cut(s) 86, 346
XceI RCATGY 1 cut(s) 58
XspI CTAG 3 cut(s) 258, 326, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.