Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001118

Physical Location & Seq

Genomic Coordinates Reverse (-)

21817838 .. 21818341

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G215100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTGTTAATGGTTCTAGCCGTGACTACATCTTTGGTCCTAGCCAGTCATGAGGTCAAAGAAACCCAACTTTCCTTCTACTTTCAAGACATCTTTGCCGGTCCGAATGCCACAGACATACCATTTGCAGGTATTTCCGGCAAGGCTTGGACCTTCACTCAATTTGCCACACTTTATGCCATTGATGACCCTGTAACGGAAGGCTCACACCCAAACTCAGCCTCCGTTGGCCGGGTACAAGGCACCTCTATGACATCAGCATTGGATGGACTTAATGCTCATGTCTTGTTTTCCATCGTGTTCACAAACAAGAAGTACAATGGTAGCACTCTACAGATACAAGGGATTGATAAGCAATTCGAGCCAGTTAGAGAATTATCAGTGGTTTCAGGTACTGGAAAATTTCGATTTGTTAGAGGATATATTACTTTCGAAACGATTTCCGTGGACATTCCAAACTCATACGCAGTTATACGATGCAACGTTACGGTGAAACACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

168

Amino Acids

18.28

Weight (kDa)

6.4

Isoelectric Point (pI)

15.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42490 FvH4_6g42500 FvH4_6g42510 FvH4_6g42930 FvH4_7g31480
malus_domestica	MD09G1070400.v1.1 MD09G1111300.v1.1 MD09G1111600.v1.1
prunus_persica	Prupe.3G215100_v2.0.a1 Prupe.3G215500_v2.0.a1 Prupe.3G215600_v2.0.a1
pyrus_communis	pycom09g03340 pycom09g03530 pycom09g03590
rosa_chinensis	RchiOBHm_Chr2g0158861 RchiOBHm_Chr2g0158891 RchiOBHm_Chr2g0158911
rosa_laevigata	RLG00000021118 RLG00000021121 RLG00000021122 RLG00000021123
rosa_multiflora	Rmu_sc0002267.1_g000001 Rmu_sc0002267.1_g000002 Rmu_sc0002267.1_g000003 Rmu_sc0002267.1_g000009 Rmu_sc0002267.1_g000013 Rmu_sc0014404.1_g000006 Rmu_sc0014404.1_g000009 Rmu_sc0014404.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090880 Rroxscaffold_2G00090950
rosa_rugosa	Rorug02G0467800 Rorug02G0468200 Rorug02G0473000 Rorug02G0473000 Rorug02G0473000
rosa_samantha	Rh2AG533900 Rh2AG534200 Rh2AG539000 Rh2AG539200 Rh2BG547600 Rh2BG547700 Rh2BG551600 Rh2BG552000 Rh2BG552100 Rh2BG552200 Rh2CG517900 Rh2CG518100 Rh2CG522300 Rh2CG522600 Rh2DG557200 Rh2DG557300 Rh2DG561400 Rh2DG561800 Rh2DG562000
rosa_wichuraiana	Rw2G044240 Rw2G044600 Rw2G044630 Rw2G044640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	242
AclI	AACGTT	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	3 cut(s)	237, 317, 394
AfiI	CCNNNNNNNGG	3 cut(s)	128, 196, 231
AgsI	TTSAA	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	401
ArsI	GACNNNNNNTTYG	4 cut(s)	16, 48, 107, 139
AspS9I	GGNCC	3 cut(s)	37, 101, 150
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	502
AsuII	TTCGAA	1 cut(s)	432
AvaII	GGWCC	3 cut(s)	37, 101, 150
BanI	GGYRCC	1 cut(s)	242
BccI	CCATC	2 cut(s)	260, 302
BceAI	ACGGC	1 cut(s)	5
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	3 cut(s)	17, 41, 502
BfmI	CTRYAG	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	3 cut(s)	37, 101, 150
BmgT120I	GGNCC	3 cut(s)	37, 101, 150
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 196, 231
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	3 cut(s)	45, 365, 400
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	3 cut(s)	128, 196, 231
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	3 cut(s)	45, 365, 400
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	99, 138, 232
BslI	CCNNNNNNNGG	3 cut(s)	128, 196, 231
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	432
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	119
BspT104I	TTCGAA	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	45, 365, 400
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	444
Bst4CI	ACNGT	1 cut(s)	490
BstBI	TTCGAA	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	119
CaiI	CAGNNNCTG	1 cut(s)	395
CciI	TCATGA	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	37, 101, 150
CpoI	CGGWCCG	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	236, 316, 393
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	2 cut(s)	50, 281
CviJI	RGCY	7 cut(s)	20, 44, 146, 204, 221, 231, 364
CviKI_1	RGCY	7 cut(s)	20, 44, 146, 204, 221, 231, 364
CviQI	GTAC	3 cut(s)	236, 316, 393
DdeI	CTNAG	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	229
Eco47I	GGWCC	3 cut(s)	37, 101, 150
FaeI	CATG	2 cut(s)	53, 284
FaiI	YATR	8 cut(s)	51, 119, 177, 251, 282, 423, 463, 473
FatI	CATG	2 cut(s)	49, 280
FokI	GGATG	1 cut(s)	278
FspBI	CTAG	3 cut(s)	17, 41, 502
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	3 cut(s)	99, 138, 232
Hin1II	CATG	2 cut(s)	53, 284
HpaII	CCGG	3 cut(s)	99, 138, 232
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	303, 448
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	50, 86
Hpy8I	GTNNAC	2 cut(s)	303, 448
HpyAV	CCTTC	3 cut(s)	85, 163, 194
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	2 cut(s)	128, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	2 cut(s)	53, 284
LpnPI	CCDG	9 cut(s)	58, 112, 114, 151, 204, 245, 375, 378, 381
LweI	GCATC	1 cut(s)	467
MaeI	CTAG	3 cut(s)	17, 41, 502
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	3 cut(s)	22, 193, 484
MluCI	AATT	4 cut(s)	161, 356, 374, 401
MnlI	CCTC	4 cut(s)	46, 232, 256, 410
MseI	TTAA	2 cut(s)	8, 273
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	3 cut(s)	99, 138, 232
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	233
NlaIII	CATG	2 cut(s)	53, 284
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	432
PagI	TCATGA	1 cut(s)	49
PctI	GAATGC	1 cut(s)	112
Psp1406I	AACGTT	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	3 cut(s)	37, 101, 150
PstNI	CAGNNNCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	237, 317, 394
RsaNI	GTAC	3 cut(s)	236, 316, 393
RseI	CAYNNNNRTG	1 cut(s)	248
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	8, 273
Sau96I	GGNCC	3 cut(s)	37, 101, 150
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	6 cut(s)	57, 133, 155, 248, 394, 486
SfaNI	GCATC	1 cut(s)	467
SfcI	CTRYAG	1 cut(s)	332
SfuI	TTCGAA	1 cut(s)	432
SinI	GGWCC	3 cut(s)	37, 101, 150
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	161, 356, 374, 401
SspMI	CTAG	3 cut(s)	17, 41, 502
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	360, 406, 432
TasI	AATT	4 cut(s)	161, 356, 374, 401
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	8, 273
Tru9I	TTAA	2 cut(s)	8, 273
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspGWI	ACGGA	3 cut(s)	212, 214, 433
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	3 cut(s)	37, 101, 150
XapI	RAATTY	1 cut(s)	401
XspI	CTAG	3 cut(s)	17, 41, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.