Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001118

Physical Location & Seq

Genomic Coordinates Reverse (-)

79093361 .. 79094977

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG562000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCATTAAACTTGATACCCAAGTTACTGTTGGTCCTGGTTCTATCCATGACTACATTATCCGCCATAGCCAGTAGCAGTAAAGAGTACAAAGAAACCCACATGTCCATGTACCTTCAGGACTTCCTTACCGGTCCAAATGTCACAGATATACCAGTTGCGGGTGTCGCTGGAAAGCTTTGGGCCTTCAATCAATTTGGAACACTTTATGTCAATGACAACCCTCTCACAGAAGGCCCAAGCCCACAATCGGCAGAGGTGGGCCGAGCCCCAGGTATTTTTGTGGCTTCAGCACTGGACGGATCTAGTGGCCTTGTTGCGTTTTCAGTTGTGTTCACTAACAAGGAGTACAATGGCAGCACCATAGAGATACTAGGAAACAGTAAGATACTGGATCCGGTTAGAGAGCTTTCGGTGGCATCCGGTACCGGAAAGTTTCGGTTTGCTAGAGGGTACGCTACGCTTGAAACCTATTTTCTGGACATTCCGAGAGCATACTCGATCGTACGACTCAACATAACAGTGGAACACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

178

Amino Acids

19.22

Weight (kDa)

6.1

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	33 - 175	3.5e-44	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42490 FvH4_6g42500 FvH4_6g42510 FvH4_6g42930 FvH4_7g31480
malus_domestica	MD09G1070400.v1.1 MD09G1111300.v1.1 MD09G1111600.v1.1
prunus_persica	Prupe.3G215100_v2.0.a1 Prupe.3G215500_v2.0.a1 Prupe.3G215600_v2.0.a1
pyrus_communis	pycom09g03340 pycom09g03530 pycom09g03590
rosa_chinensis	RchiOBHm_Chr2g0158861 RchiOBHm_Chr2g0158891 RchiOBHm_Chr2g0158911
rosa_laevigata	RLG00000021118 RLG00000021121 RLG00000021122 RLG00000021123
rosa_multiflora	Rmu_sc0002267.1_g000001 Rmu_sc0002267.1_g000002 Rmu_sc0002267.1_g000003 Rmu_sc0002267.1_g000009 Rmu_sc0002267.1_g000013 Rmu_sc0014404.1_g000006 Rmu_sc0014404.1_g000009 Rmu_sc0014404.1_g000014
rosa_roxburghii	Rroxscaffold_2G00090880 Rroxscaffold_2G00090950
rosa_rugosa	Rorug02G0467800 Rorug02G0468200 Rorug02G0473000 Rorug02G0473000 Rorug02G0473000
rosa_samantha	Rh2AG533900 Rh2AG534200 Rh2AG539000 Rh2AG539200 Rh2BG547600 Rh2BG547700 Rh2BG551600 Rh2BG552000 Rh2BG552100 Rh2BG552200 Rh2CG517900 Rh2CG518100 Rh2CG522300 Rh2CG522600 Rh2DG557200 Rh2DG557300 Rh2DG561400 Rh2DG561800 Rh2DG562000
rosa_wichuraiana	Rw2G044240 Rw2G044600 Rw2G044630 Rw2G044640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	425
AciI	CCGC	2 cut(s)	63, 161
AclWI	GGATC	3 cut(s)	310, 389, 402
AcuI	CTGAAG	2 cut(s)	101, 273
AfaI	GTAC	6 cut(s)	89, 113, 350, 427, 455, 507
AfiI	CCNNNNNNNGG	2 cut(s)	161, 250
AflIII	ACRYGT	1 cut(s)	102
AgeI	ACCGGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	190, 467
AjnI	CCWGG	2 cut(s)	36, 271
AluBI	AGCT	2 cut(s)	178, 409
AluI	AGCT	2 cut(s)	178, 409
AlwI	GGATC	3 cut(s)	310, 389, 402
AoxI	GGCC	4 cut(s)	183, 235, 262, 310
ApeKI	GCWGC	1 cut(s)	357
AsiGI	ACCGGT	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	425
AspS9I	GGNCC	5 cut(s)	34, 134, 183, 236, 262
AvaII	GGWCC	2 cut(s)	34, 134
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
BamHI	GGATCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	38, 273
BfaI	CTAG	3 cut(s)	306, 374, 447
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme1390I	CCNGG	2 cut(s)	38, 273
Bme18I	GGWCC	2 cut(s)	34, 134
BmgT120I	GGNCC	5 cut(s)	34, 134, 183, 236, 262
BmiI	GGNNCC	2 cut(s)	396, 427
BmrFI	CCNGG	2 cut(s)	38, 273
BmsI	GCATC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	4 cut(s)	131, 397, 422, 428
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 250
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	4 cut(s)	72, 155, 300, 396
BseBI	CCWGG	2 cut(s)	38, 273
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	161, 250
BseNI	ACTGG	4 cut(s)	72, 155, 300, 396
BseXI	GCAGC	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	504
BshFI	GGCC	4 cut(s)	185, 237, 264, 312
BshNI	GGYRCC	1 cut(s)	425
BshTI	ACCGGT	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	504
BsiSI	CCGG	4 cut(s)	132, 398, 423, 429
BsiWI	CGTACG	1 cut(s)	505
BslI	CCNNNNNNNGG	2 cut(s)	161, 250
BsnI	GGCC	4 cut(s)	185, 237, 264, 312
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	302, 394, 501
BspACI	CCGC	2 cut(s)	63, 161
BspANI	GGCC	4 cut(s)	185, 237, 264, 312
BspLI	GGNNCC	2 cut(s)	396, 427
BspPI	GGATC	3 cut(s)	310, 389, 402
BspT107I	GGYRCC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	4 cut(s)	72, 155, 300, 396
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	3 cut(s)	302, 394, 501
Bst2UI	CCWGG	2 cut(s)	38, 273
Bst4CI	ACNGT	3 cut(s)	30, 383, 523
BstF5I	GGATG	1 cut(s)	419
BstKTI	GATC	3 cut(s)	305, 397, 504
BstMBI	GATC	3 cut(s)	302, 394, 501
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	38, 273
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	36, 271
BstV1I	GCAGC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	302, 394
BstYI	RGATCY	2 cut(s)	302, 394
BsuRI	GGCC	4 cut(s)	185, 237, 264, 312
BtsCI	GGATG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	293, 528
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	5 cut(s)	34, 134, 183, 236, 262
Csp6I	GTAC	6 cut(s)	88, 112, 349, 426, 454, 506
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	3 cut(s)	49, 103, 109
CviQI	GTAC	6 cut(s)	88, 112, 349, 426, 454, 506
DpnI	GATC	3 cut(s)	304, 396, 503
DpnII	GATC	3 cut(s)	302, 394, 501
EciI	GGCGGA	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	34, 134
Eco57I	CTGAAG	2 cut(s)	101, 273
EcoRII	CCWGG	2 cut(s)	36, 271
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	3 cut(s)	52, 106, 112
FaiI	YATR	9 cut(s)	50, 68, 104, 110, 152, 210, 365, 496, 518
FatI	CATG	3 cut(s)	48, 102, 108
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	358
FspBI	CTAG	3 cut(s)	306, 374, 447
GluI	GCNGC	1 cut(s)	358
HaeIII	GGCC	4 cut(s)	185, 237, 264, 312
HapII	CCGG	4 cut(s)	132, 398, 423, 429
Hin1II	CATG	3 cut(s)	52, 106, 112
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	1 cut(s)	510
HpaII	CCGG	4 cut(s)	132, 398, 423, 429
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	1 cut(s)	489
Hpy188III	TCNNGA	2 cut(s)	119, 479
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	3 cut(s)	125, 196, 227
HpyCH4III	ACNGT	3 cut(s)	30, 383, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92II	CATG	3 cut(s)	52, 106, 112
KpnI	GGTACC	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	302, 394, 501
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	3 cut(s)	306, 374, 447
MaeIII	GTNAC	2 cut(s)	24, 142
MalI	GATC	3 cut(s)	304, 396, 503
MboI	GATC	3 cut(s)	302, 394, 501
MflI	RGATCY	2 cut(s)	302, 394
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	504
MnlI	CCTC	3 cut(s)	234, 250, 443
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	2 cut(s)	107, 521
MspI	CCGG	4 cut(s)	132, 398, 423, 429
MspR9I	CCNGG	2 cut(s)	38, 273
MvaI	CCWGG	2 cut(s)	38, 273
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	3 cut(s)	302, 394, 501
NlaIII	CATG	3 cut(s)	52, 106, 112
NlaIV	GGNNCC	2 cut(s)	396, 427
NmeAIII	GCCGAG	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
Pfl23II	CGTACG	1 cut(s)	505
PinAI	ACCGGT	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	359
Ple19I	CGATCG	1 cut(s)	504
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PscI	ACATGT	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	36, 271
PspGI	CCWGG	2 cut(s)	36, 271
PspLI	CGTACG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	396, 427
PspPI	GGNCC	5 cut(s)	34, 134, 183, 236, 262
PsuI	RGATCY	2 cut(s)	302, 394
PvuI	CGATCG	1 cut(s)	504
RsaI	GTAC	6 cut(s)	89, 113, 350, 427, 455, 507
RsaNI	GTAC	6 cut(s)	88, 112, 349, 426, 454, 506
RseI	CAYNNNNRTG	2 cut(s)	107, 521
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	3 cut(s)	302, 394, 501
Sau96I	GGNCC	5 cut(s)	34, 134, 183, 236, 262
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	2 cut(s)	38, 273
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	6 cut(s)	117, 180, 261, 277, 411, 473
SfaNI	GCATC	1 cut(s)	428
SinI	GGWCC	2 cut(s)	34, 134
SmiMI	CAYNNNNRTG	2 cut(s)	107, 521
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	63, 161
SspMI	CTAG	3 cut(s)	306, 374, 447
StyD4I	CCNGG	2 cut(s)	36, 271
TaaI	ACNGT	3 cut(s)	30, 383, 523
TaqI	TCGA	1 cut(s)	500
TasI	AATT	1 cut(s)	194
TatI	WGTACW	2 cut(s)	87, 348
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	300, 528
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	357
Tsp45I	GTSAC	1 cut(s)	142
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	300, 528
VpaK11BI	GGWCC	2 cut(s)	34, 134
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	3 cut(s)	306, 374, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.