MD06G1024500.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
2997128 .. 2999977
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1024500.v1.1.491

Sequence Viewer

Length: 2850 bp
ATGGCAGAGAGTTCTGTATGTTTTGTGCTGGAGAAGCTTGCATCCATTTTCGAAAAAGAGGTGAACCTGTTCCGAGGGGTTAGAGAAGAAGCTGTCTATCTGAGAGGGGAGTTGGAAAGGATGAAGGCCTTTCTCAGGACCGCAGACGTGCTGCAGGAAACTGACGAGGAGCTCAAAGTGTGGGTTAGGCAAGTGAGAGACATTGCTCATGAAGCTGAGGACGTTCTAGACGAATTCGCTCTTCTGCAAGAGCATGATCATGATCGTGATCATGGATATGGAATTTATGGCTCTCTCCGCAGGTTGGGTTGCTGTATTAAGAATGCCAAAGCTAGTTATCGGATTGGTTCCGAGTTACAAGCCATCAACTCAAGAGTCAAAGAGATTGGTGAGGTTCACAGGAGACTTTGTCACAAGTTCAACAAGGCTGATGACAGTGCAGGAAATACATGGCAAGATCGTCGAGGAGATGCCCTTCTTTTGGACAAGTATGATCTTGTTGGCCTTGACGAGCCCAAAAGTCAACTGGTGGGGTGGCTTTTTAAGGGCAGCTCTGGCCGTGAAGTAGTTTCGGTGGCTGGAATGGGAGGAATGGGGAAGACCACCTTGGCCAAGCAAGTCTATGATGATCCAGAAGTCAAGAAACATTTCAAAGTGCGTGCGTGGATCACAGTTAACCGGTCATTCAAATTTGGCGACCTACTCAGAGACATGGTTCAACAACTTTTCAAAGCAATCAGAAGACAAGTTCCACAGATGGTGGCGAACATGAACAACAACCAGCTCAAGACAACAATTAAGGAGTTGCTGCAGAAACGGAGGTACCTGATTGTTTTGGATGATGTATGGAACCTGAGTGAATGGAATGCTATCAAATATGCACTGCCGAACAATGATTGCGGCAGCCGAATTATGCTCACTACGAGAAAATCAGATGTAGCCACTACCGCTGCAGGTGTACTATCTGAAGGTAAGGCCTATGACTTAAAGCCCTTGCCTCCTTCCGAGTCTTGGGATCTCTTCTGCAGAAGGGCGTTTCAACATAACAAATGCCCTCCTCATTTGGAGGAAATTTGTAACTACATCTTAAGAAAATGCGAGGGACTTCCCCTTGCAATTGTCGCAATCAGTGGTGTGTTGGCAACTAAAGATACACGTAGACTTGACGAGTGGGATGTGGTTGCACGCAGCCTGGGGGCTGAAATTGAGGGCAACGACAAGCTCAATGATTTAAAGAAAGTTCTTTCCCTCAGCTTCAATGATTTGCCGTACTTCCTCAAGTCCTGCTTCTTGTACCTGAGCATATTTCCTGAGGACCATCTAATCGAGCGCATGAGACTGATCCGGTTATGGGTGGCAGAGGGATTCATAGAAGCAAAGGAGGGGAAAACACTGGAAGAGGTAGGAGAGGACTATCTCCAGGAACTCTTGAACAGAAGCCTAATGCAAGTGGCAACTACTACACCTGATGGAAGGGTAAAAACATGTCGAATCCATGACCTTTTGCGAGAGATCATCATCTCCAAGTCAAGAGATCAGAACTTCACCACAATCCTGAAAGAACAAAGCTTGCAATGGTCTGAGAGGGTTCGACGCCTATCGATACATGGCACACTACAAAATGTTCAGCCAAACAGGTCAGTGTCCCAACTGCGTTCCCTGTTCATGTTCGGTGTCACTGAACAGCCATCCATCCCTAGATTATTCCCAAGCGGCTTCAGGCTGCTAAATGTGTTAGACTTTCAAAACTCACCTTTGGAGAAATTTCCAGTTGAAGTGGTGGACTTGTATTATTTGAAATATCTAAGCTTGCGGGAAACAAAGGTGGAAACTGTTCCGAGATCTATTGGGAAGCTTAAGAATCTAGAAACTCTAGACCTTAAGCATTCCAAAGTCAAACAACTTCCTGTTGAGATATTGAAGCTCCATCGGCTGCGCCATCTTCTGGTATATCTACATGAGTTTGAATCTTACGAACATTTTCATTCAAAGAACGGCTTTAAGGTCATGCCAAATATTGGGGTTCTGCAAGCACTACAGAAGCTTTGTTTCGTAGAGGTAAACCAAGATGGCCGAACCATAATAAGGGAGCTTGGCAAGCTAAATCAACTGAGGAGGTTAGGCCTCTTAAAATTGAGAAAAGAAGATGGCGAGGCCCTGTGTTCGTCTATCGAAAAGCTAACGAATCTTTGTGCCCTGTCTATAGCTTCAGTCAAAGAAGACGAGATCATTGATCTTCAACACCTATCTTCTCCTCCTTTGTTTCTTCAGCGGCTGTACATGAGAGGACGTTTGGACGCATTGCCCTATTGGATTCCTATGCTCCCCAGCCTAGTCAGATTGTCTCTTAAGTGGAGTAGGTTAAAGGATGATCCACTCATCTATCTCCAACACATTCCTAATCTTGTTCAACTTGAATTAATTCAAGCATTCGTTGGAGACAGATTGTGCTTCAGAGCTTATGGGTTTGGGAAGCTCAAGATTCTAACCCTGGACAAACTTGATGAACTGAGATGCATAGAAGTGGAGAAGGGTGCAATGGCTTGTCTTGAGAAGCTAACCATTCAACGGTGTAAGCTCCTGGAGAATGTGCCTTCGGGTATTGAGCATCTGACAGAGTTGAAAGTTCTCGAGTTTTCTAATATGCCGGTGGATTTGATGAAGACAATTTGCACAGATGGAAAAGATAATTCCAAAGTCTTGCACATCCCGGAACTTTATTCAACATACTGGAGAGAAGGGGGGTGGGAAGTCTACTCCATAGAGAGCATGATGGATGGGGAGTACTGTCCCATGCCCAGCAACCCCTTTAGCGATGAGCTTCAAACTCGTTGGAAGTCATGGAAGTAA

Protein Analysis

950

Amino Acids

109.48

Weight (kDa)

8.38

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 87 4.6e-25 Rx N-terminal domain
NB-ARC PF00931 171 - 350 4.6e-43 NB-ARC domain
WHD_DRP PF23559 435 - 506 4.2e-26 Disease resistance protein Winged helix domain
LRR_14 PF23598 550 - 878 8.3e-44 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 944
Acc36I ACCTGC 2 cut(s) 291, 944
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 822
AccB7I CCANNNNNTGG 2 cut(s) 1945, 2018
AccI GTMKAC 2 cut(s) 1159, 2754
AciI CCGC 7 cut(s) 141, 298, 900, 948, 1713, 1813, 2272
AclWI GGATC 5 cut(s) 623, 674, 1023, 1336, 2366
AcoI YGGCCR 3 cut(s) 556, 609, 2071
AcsI RAATTY 5 cut(s) 233, 282, 689, 1071, 1763
AcuI CTGAAG 5 cut(s) 987, 1702, 2193, 2252, 2437
AcyI GRCGYC 1 cut(s) 1594
AfaI GTAC 6 cut(s) 824, 960, 1271, 1295, 2279, 2786
AfiI CCNNNNNNNGG 9 cut(s) 135, 304, 481, 1011, 1351, 1945, 2018, 2085, 2568
AflII CTTAAG 4 cut(s) 1087, 1856, 1880, 2348
AflIII ACRYGT 2 cut(s) 1154, 1484
AgeI ACCGGT 1 cut(s) 678
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 4 cut(s) 1191, 1419, 2490, 2580
AjuI GAANNNNNNNTTGG 2 cut(s) 590, 622
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 6 cut(s) 192, 397, 702, 1330, 2349, 2433
AlwI GGATC 5 cut(s) 623, 674, 1023, 1336, 2366
AlwNI CAGNNNCTG 1 cut(s) 2275
Ama87I CYCGRG 1 cut(s) 2630
AoxI GGCC 8 cut(s) 126, 502, 556, 609, 975, 2071, 2122, 2154
ApeKI GCWGC 8 cut(s) 151, 549, 808, 903, 950, 1188, 1723, 1933
ApoI RAATTY 5 cut(s) 233, 282, 689, 1071, 1763
AseI ATTAAT 1 cut(s) 2420
AsiGI ACCGGT 1 cut(s) 678
Asp700I GAANNNNTTC 5 cut(s) 68, 647, 1833, 1980, 2421
Asp718I GGTACC 1 cut(s) 822
AspLEI GCGC 2 cut(s) 1332, 1938
AspS9I GGNCC 3 cut(s) 138, 1315, 2155
AsuC2I CCSGG 1 cut(s) 2711
AsuHPI GGTGA 4 cut(s) 73, 401, 1537, 1743
AsuII TTCGAA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 2630
AvaII GGWCC 2 cut(s) 138, 1315
AxyI CCTNAGG 1 cut(s) 1311
BaeGI GKGCMC 1 cut(s) 2197
BaeI ACNNNNGTAYC 2 cut(s) 806, 839
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 1 cut(s) 822
BanII GRGCYC 2 cut(s) 174, 516
BbsI GAAGAC 4 cut(s) 605, 748, 2226, 2669
Bbv12I GWGCWC 1 cut(s) 174
BbvCI CCTCAGC 2 cut(s) 216, 1250
BbvI GCAGC 8 cut(s) 138, 561, 795, 915, 937, 1200, 1710, 1920
BceAI ACGGC 3 cut(s) 543, 1252, 2011
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 4 cut(s) 1193, 1421, 2492, 2582
BclI TGATCA 2 cut(s) 256, 268
BcnI CCSGG 1 cut(s) 2711
BcoDI GTCTC 6 cut(s) 192, 397, 702, 1330, 2349, 2433
BfaI CTAG 6 cut(s) 227, 333, 1698, 1865, 1874, 2333
BfmI CTRYAG 6 cut(s) 152, 809, 951, 1024, 2036, 2202
BfrI CTTAAG 4 cut(s) 1087, 1856, 1880, 2348
BfuAI ACCTGC 2 cut(s) 291, 944
BglII AGATCT 1 cut(s) 1841
BmcAI AGTACT 1 cut(s) 2786
Bme1390I CCNGG 5 cut(s) 1193, 1421, 2492, 2582, 2711
Bme18I GGWCC 2 cut(s) 138, 1315
BmeT110I CYCGRG 1 cut(s) 2630
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 138, 1315, 2155
BmiI GGNNCC 3 cut(s) 349, 824, 851
BmrFI CCNGG 5 cut(s) 1193, 1421, 2492, 2582, 2711
BmsI GCATC 4 cut(s) 50, 460, 2504, 2617
BpiI GAAGAC 4 cut(s) 605, 748, 2226, 2669
BpmI CTGGAG 4 cut(s) 50, 1403, 2603, 2752
Bpu10I CCTNAGC 3 cut(s) 216, 1250, 1298
Bpu14I TTCGAA 1 cut(s) 51
BpuEI CTTGAG 5 cut(s) 355, 770, 1262, 2462, 2570
BpuMI CCSGG 1 cut(s) 2711
Bsa29I ATCGAT 1 cut(s) 1601
BsaAI YACGTR 1 cut(s) 1157
BsaBI GATNNNNATC 3 cut(s) 261, 267, 1517
BsaHI GRCGYC 1 cut(s) 1594
BsaJI CCNNGG 4 cut(s) 73, 606, 1192, 2490
BsaWI WCCGGW 2 cut(s) 678, 1344
BsaXI ACNNNNNCTCC 2 cut(s) 394, 424
Bsc4I CCNNNNNNNGG 9 cut(s) 135, 304, 481, 1011, 1351, 1945, 2018, 2085, 2568
Bse118I RCCGGY 2 cut(s) 678, 2647
Bse1I ACTGG 4 cut(s) 531, 1398, 1769, 2735
Bse21I CCTNAGG 1 cut(s) 1311
Bse3DI GCAATG 4 cut(s) 201, 1580, 2300, 2544
Bse8I GATNNNNATC 3 cut(s) 261, 267, 1517
BseBI CCWGG 4 cut(s) 1193, 1421, 2492, 2582
BseCI ATCGAT 1 cut(s) 1601
BseDI CCNNGG 4 cut(s) 73, 606, 1192, 2490
BseGI GGATG 9 cut(s) 41, 126, 844, 1180, 1688, 1692, 2374, 2706, 2782
BseJI GATNNNNATC 3 cut(s) 261, 267, 1517
BseLI CCNNNNNNNGG 9 cut(s) 135, 304, 481, 1011, 1351, 1945, 2018, 2085, 2568
BseMI GCAATG 4 cut(s) 201, 1580, 2300, 2544
BseNI ACTGG 4 cut(s) 531, 1398, 1769, 2735
BseRI GAGGAG 5 cut(s) 182, 480, 1047, 2128, 2244
BseSI GKGCMC 1 cut(s) 2197
BseXI GCAGC 8 cut(s) 138, 561, 795, 915, 937, 1200, 1710, 1920
BseYI CCCAGC 2 cut(s) 2327, 2798
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 8 cut(s) 128, 504, 558, 611, 977, 2073, 2124, 2156
BshNI GGYRCC 1 cut(s) 822
BshTI ACCGGT 1 cut(s) 678
BshVI ATCGAT 1 cut(s) 1601
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 2630
BsiSI CCGG 4 cut(s) 679, 1345, 2648, 2711
BslFI GGGAC 3 cut(s) 1116, 1630, 2775
BslI CCNNNNNNNGG 9 cut(s) 135, 304, 481, 1011, 1351, 1945, 2018, 2085, 2568
BsmAI GTCTC 6 cut(s) 192, 397, 702, 1330, 2349, 2433
BsmFI GGGAC 3 cut(s) 1116, 1630, 2775
BsmI GAATGC 4 cut(s) 328, 871, 1885, 2429
BsnI GGCC 8 cut(s) 128, 504, 558, 611, 977, 2073, 2124, 2156
BsoBI CYCGRG 1 cut(s) 2630
Bsp119I TTCGAA 1 cut(s) 51
Bsp1286I GDGCHC 3 cut(s) 174, 516, 2197
Bsp1407I TGTACA 1 cut(s) 2277
BspACI CCGC 7 cut(s) 141, 298, 900, 948, 1713, 1813, 2272
BspANI GGCC 8 cut(s) 128, 504, 558, 611, 977, 2073, 2124, 2156
BspDI ATCGAT 1 cut(s) 1601
BspHI TCATGA 2 cut(s) 208, 259
BspLI GGNNCC 3 cut(s) 349, 824, 851
BspMAI CTGCAG 4 cut(s) 156, 813, 955, 1028
BspMI ACCTGC 2 cut(s) 291, 944
BspPI GGATC 5 cut(s) 623, 674, 1023, 1336, 2366
BspQI GCTCTTC 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 822
BspTI CTTAAG 4 cut(s) 1087, 1856, 1880, 2348
BsrDI GCAATG 4 cut(s) 201, 1580, 2300, 2544
BsrFI RCCGGY 2 cut(s) 678, 2647
BsrGI TGTACA 1 cut(s) 2277
BsrI ACTGG 4 cut(s) 531, 1398, 1769, 2735
BssAI RCCGGY 2 cut(s) 678, 2647
BssECI CCNNGG 4 cut(s) 73, 606, 1192, 2490
BssNI GRCGYC 1 cut(s) 1594
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 4 cut(s) 1193, 1421, 2492, 2582
Bst4CI ACNGT 5 cut(s) 437, 673, 1834, 2571, 2789
Bst6I CTCTTC 3 cut(s) 246, 1025, 1392
BstACI GRCGYC 1 cut(s) 1594
BstAFI CTTAAG 4 cut(s) 1087, 1856, 1880, 2348
BstAUI TGTACA 1 cut(s) 2277
BstBAI YACGTR 1 cut(s) 1157
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 7 cut(s) 39, 660, 1186, 1571, 1811, 2031, 2099
BstENI CCTNNNNNAGG 1 cut(s) 133
BstF5I GGATG 9 cut(s) 41, 126, 844, 1180, 1688, 1692, 2374, 2706, 2782
BstHHI GCGC 2 cut(s) 1332, 1938
BstMAI GTCTC 6 cut(s) 192, 397, 702, 1330, 2349, 2433
BstMWI GCNNNNNNNGC 8 cut(s) 34, 212, 297, 555, 947, 1121, 1930, 2098
BstNI CCWGG 4 cut(s) 1193, 1421, 2492, 2582
BstNSI RCATGY 1 cut(s) 1488
BstSCI CCNGG 5 cut(s) 1191, 1419, 2490, 2580, 2709
BstSFI CTRYAG 6 cut(s) 152, 809, 951, 1024, 2036, 2202
BstSLI GKGCMC 1 cut(s) 2197
BstV1I GCAGC 8 cut(s) 138, 561, 795, 915, 937, 1200, 1710, 1920
BstV2I GAAGAC 4 cut(s) 605, 748, 2226, 2669
BstX2I RGATCY 2 cut(s) 1015, 1841
BstYI RGATCY 2 cut(s) 1015, 1841
Bsu15I ATCGAT 1 cut(s) 1601
Bsu36I CCTNAGG 1 cut(s) 1311
BsuRI GGCC 8 cut(s) 128, 504, 558, 611, 977, 2073, 2124, 2156
BsuTUI ATCGAT 1 cut(s) 1601
BtgZI GCGATG 1 cut(s) 2829
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 9 cut(s) 41, 126, 844, 1180, 1688, 1692, 2374, 2706, 2782
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 6 cut(s) 442, 881, 1135, 1391, 1647, 1677
BveI ACCTGC 2 cut(s) 291, 944
Cac8I GCNNGC 7 cut(s) 39, 660, 1186, 1571, 1811, 2031, 2099
CaiI CAGNNNCTG 1 cut(s) 2275
CciI TCATGA 2 cut(s) 208, 259
CfoI GCGC 2 cut(s) 1332, 1938
Cfr10I RCCGGY 2 cut(s) 678, 2647
Cfr13I GGNCC 3 cut(s) 138, 1315, 2155
ClaI ATCGAT 1 cut(s) 1601
CseI GACGC 2 cut(s) 1602, 2306
Csp6I GTAC 6 cut(s) 823, 959, 1270, 1294, 2278, 2785
CspAI ACCGGT 1 cut(s) 678
CviQI GTAC 6 cut(s) 823, 959, 1270, 1294, 2278, 2785
DraI TTTAAA 1 cut(s) 1233
EaeI YGGCCR 3 cut(s) 556, 609, 2071
Eam1104I CTCTTC 3 cut(s) 246, 1025, 1392
EarI CTCTTC 3 cut(s) 246, 1025, 1392
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 3 cut(s) 128, 977, 2124
Eco24I GRGCYC 2 cut(s) 174, 516
Eco47I GGWCC 2 cut(s) 138, 1315
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 5 cut(s) 987, 1702, 2193, 2252, 2437
Eco81I CCTNAGG 1 cut(s) 1311
Eco88I CYCGRG 1 cut(s) 2630
EcoICRI GAGCTC 1 cut(s) 172
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 2155
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 4 cut(s) 1191, 1419, 2490, 2580
EcoT14I CCWWGG 1 cut(s) 606
EcoT22I ATGCAT 1 cut(s) 2519
EcoT38I GRGCYC 2 cut(s) 174, 516
ErhI CCWWGG 1 cut(s) 606
FalI AAGNNNNNCTT 6 cut(s) 590, 622, 1271, 1303, 1982, 2014
FaqI GGGAC 3 cut(s) 1116, 1630, 2775
FauI CCCGC 1 cut(s) 1806
FbaI TGATCA 2 cut(s) 256, 268
FblI GTMKAC 2 cut(s) 1159, 2754
FokI GGATG 9 cut(s) 28, 133, 851, 1187, 1675, 1679, 2381, 2693, 2789
FriOI GRGCYC 2 cut(s) 174, 516
FspBI CTAG 6 cut(s) 227, 333, 1698, 1865, 1874, 2333
GlaI GCGC 2 cut(s) 1331, 1937
GsaI CCCAGC 2 cut(s) 2331, 2802
GsuI CTGGAG 4 cut(s) 50, 1403, 2603, 2752
HaeIII GGCC 8 cut(s) 128, 504, 558, 611, 977, 2073, 2124, 2156
HapII CCGG 4 cut(s) 679, 1345, 2648, 2711
HgaI GACGC 2 cut(s) 1602, 2306
HhaI GCGC 2 cut(s) 1332, 1938
Hin1I GRCGYC 1 cut(s) 1594
Hin6I GCGC 2 cut(s) 1330, 1936
HinP1I GCGC 2 cut(s) 1330, 1936
HincII GTYRAC 2 cut(s) 524, 676
HindII GTYRAC 2 cut(s) 524, 676
HindIII AAGCTT 5 cut(s) 35, 1567, 1807, 1853, 2042
HinfI GANTC 9 cut(s) 375, 1007, 1365, 1491, 1861, 1967, 2185, 2314, 2482
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 4 cut(s) 679, 1345, 2648, 2711
HphI GGTGA 4 cut(s) 73, 401, 1537, 1743
Hpy166II GTNNAC 9 cut(s) 64, 397, 524, 676, 959, 1160, 1783, 2062, 2755
Hpy8I GTNNAC 9 cut(s) 64, 397, 524, 676, 959, 1160, 1783, 2062, 2755
Hpy99I CGWCG 2 cut(s) 465, 1596
HpyAV CCTTC 9 cut(s) 118, 485, 962, 1011, 1023, 1467, 2524, 2604, 2732
HpyCH4III ACNGT 5 cut(s) 437, 673, 1834, 2571, 2789
HpyCH4IV ACGT 4 cut(s) 147, 222, 1156, 2290
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 212, 297, 555, 947, 1121, 1930, 2098
HpySE526I ACGT 4 cut(s) 147, 222, 1156, 2290
Hsp92I GRCGYC 1 cut(s) 1594
HspAI GCGC 2 cut(s) 1330, 1936
KpnI GGTACC 1 cut(s) 826
Ksp22I TGATCA 2 cut(s) 256, 268
KspAI GTTAAC 1 cut(s) 676
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 5 cut(s) 169, 1929, 2089, 2328, 2583
Lsp1109I GCAGC 8 cut(s) 138, 561, 795, 915, 937, 1200, 1710, 1920
LweI GCATC 4 cut(s) 50, 460, 2504, 2617
MaeI CTAG 6 cut(s) 227, 333, 1698, 1865, 1874, 2333
MaeII ACGT 4 cut(s) 147, 222, 1156, 2290
MaeIII GTNAC 4 cut(s) 354, 410, 1076, 1675
MfeI CAATTG 1 cut(s) 1116
MflI RGATCY 2 cut(s) 1015, 1841
MhlI GDGCHC 3 cut(s) 174, 516, 2197
MlsI TGGCCA 1 cut(s) 611
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 2 cut(s) 384, 1016
MmeI TCCRAC 4 cut(s) 93, 2413, 2416, 2813
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 2519
MroXI GAANNNNTTC 5 cut(s) 68, 647, 1833, 1980, 2421
MscI TGGCCA 1 cut(s) 611
MslI CAYNNNNRTG 4 cut(s) 258, 264, 276, 2522
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 2 cut(s) 950, 2272
MspCI CTTAAG 4 cut(s) 1087, 1856, 1880, 2348
MspI CCGG 4 cut(s) 679, 1345, 2648, 2711
MspR9I CCNGG 5 cut(s) 1193, 1421, 2492, 2582, 2711
MunI CAATTG 1 cut(s) 1116
Mva1269I GAATGC 4 cut(s) 328, 871, 1885, 2429
MvaI CCWGG 4 cut(s) 1193, 1421, 2492, 2582
MwoI GCNNNNNNNGC 8 cut(s) 34, 212, 297, 555, 947, 1121, 1930, 2098
NciI CCSGG 1 cut(s) 2711
NlaIV GGNNCC 3 cut(s) 349, 824, 851
NmuCI GTSAC 2 cut(s) 410, 1675
NsiI ATGCAT 1 cut(s) 2519
NspI RCATGY 1 cut(s) 1488
NspV TTCGAA 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 2630
PagI TCATGA 2 cut(s) 208, 259
PaqCI CACCTGC 1 cut(s) 944
PceI AGGCCT 3 cut(s) 128, 977, 2124
PciI ACATGT 1 cut(s) 1484
PciSI GCTCTTC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 4 cut(s) 328, 871, 1885, 2429
PdmI GAANNNNTTC 5 cut(s) 68, 647, 1833, 1980, 2421
PfeI GAWTC 7 cut(s) 1365, 1491, 1861, 1967, 2185, 2314, 2482
PflFI GACNNNGTC 1 cut(s) 408
PflMI CCANNNNNTGG 2 cut(s) 1945, 2018
PfoI TCCNGGA 3 cut(s) 1419, 2580, 2709
PinAI ACCGGT 1 cut(s) 678
PleI GAGTC 2 cut(s) 383, 1015
PpsI GAGTC 2 cut(s) 383, 1015
Ppu21I YACGTR 1 cut(s) 1157
PscI ACATGT 1 cut(s) 1484
PshBI ATTAAT 1 cut(s) 2420
Psp124BI GAGCTC 1 cut(s) 174
Psp6I CCWGG 4 cut(s) 1191, 1419, 2490, 2580
PspFI CCCAGC 2 cut(s) 2327, 2798
PspGI CCWGG 4 cut(s) 1191, 1419, 2490, 2580
PspN4I GGNNCC 3 cut(s) 349, 824, 851
PspPI GGNCC 3 cut(s) 138, 1315, 2155
PstI CTGCAG 4 cut(s) 156, 813, 955, 1028
PstNI CAGNNNCTG 1 cut(s) 2275
PsuI RGATCY 2 cut(s) 1015, 1841
PsyI GACNNNGTC 1 cut(s) 408
RsaI GTAC 6 cut(s) 824, 960, 1271, 1295, 2279, 2786
RsaNI GTAC 6 cut(s) 823, 959, 1270, 1294, 2278, 2785
RseI CAYNNNNRTG 4 cut(s) 258, 264, 276, 2522
SacI GAGCTC 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 246
Sau96I GGNCC 3 cut(s) 138, 1315, 2155
ScaI AGTACT 1 cut(s) 2786
SchI GAGTC 2 cut(s) 384, 1016
ScrFI CCNGG 5 cut(s) 1193, 1421, 2492, 2582, 2711
SduI GDGCHC 3 cut(s) 174, 516, 2197
SfaNI GCATC 4 cut(s) 50, 460, 2504, 2617
SfcI CTRYAG 6 cut(s) 152, 809, 951, 1024, 2036, 2202
Sfr274I CTCGAG 1 cut(s) 2630
SfuI TTCGAA 1 cut(s) 51
SinI GGWCC 2 cut(s) 138, 1315
SlaI CTCGAG 1 cut(s) 2630
SmiMI CAYNNNNRTG 4 cut(s) 258, 264, 276, 2522
SseBI AGGCCT 3 cut(s) 128, 977, 2124
SsiI CCGC 7 cut(s) 141, 298, 900, 948, 1713, 1813, 2272
SspI AATATT 1 cut(s) 2017
SspMI CTAG 6 cut(s) 227, 333, 1698, 1865, 1874, 2333
SstI GAGCTC 1 cut(s) 174
StuI AGGCCT 3 cut(s) 128, 977, 2124
StyD4I CCNGG 5 cut(s) 1191, 1419, 2490, 2580, 2709
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 5 cut(s) 437, 673, 1834, 2571, 2789
TaiI ACGT 4 cut(s) 150, 225, 1159, 2293
TaqI TCGA 8 cut(s) 51, 463, 1326, 1489, 1591, 1601, 2172, 2631
TatI WGTACW 3 cut(s) 958, 2277, 2784
TauI GCSGC 3 cut(s) 903, 1716, 2275
TfiI GAWTC 7 cut(s) 1365, 1491, 1861, 1967, 2185, 2314, 2482
TscAI CASTG 6 cut(s) 442, 888, 1135, 1398, 1647, 1684
TseFI GTSAC 2 cut(s) 410, 1675
TseI GCWGC 8 cut(s) 151, 549, 808, 903, 950, 1188, 1723, 1933
Tsp45I GTSAC 2 cut(s) 410, 1675
TspDTI ATGAA 8 cut(s) 137, 225, 785, 1357, 1654, 1973, 2520, 2675
TspGWI ACGGA 1 cut(s) 832
TspRI CASTG 6 cut(s) 442, 888, 1135, 1398, 1647, 1684
Tth111I GACNNNGTC 1 cut(s) 408
Van91I CCANNNNNTGG 2 cut(s) 1945, 2018
Vha464I CTTAAG 4 cut(s) 1087, 1856, 1880, 2348
VpaK11BI GGWCC 2 cut(s) 138, 1315
VspI ATTAAT 1 cut(s) 2420
XagI CCTNNNNNAGG 1 cut(s) 133
XapI RAATTY 5 cut(s) 233, 282, 689, 1071, 1763
XbaI TCTAGA 3 cut(s) 226, 1864, 1873
XceI RCATGY 1 cut(s) 1488
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XhoI CTCGAG 1 cut(s) 2630
XmiI GTMKAC 2 cut(s) 1159, 2754
XmnI GAANNNNTTC 5 cut(s) 68, 647, 1833, 1980, 2421
XspI CTAG 6 cut(s) 227, 333, 1698, 1865, 1874, 2333
ZrmI AGTACT 1 cut(s) 2786
Zsp2I ATGCAT 1 cut(s) 2519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.