Rmu_sc0038076.1_g000001

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038076.1
OG0000888
Physical Location & Seq
Reverse (-)
2 .. 1307
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038076.1_g000001.1.cds

Sequence Viewer

Length: 1258 bp
atggatgaacaaggctcaagctccaaaagtgcaggttacctgttggaggaccatcgaggtgatgctttacttttagagaaaactgatatagtgggcatagacgagcctattaagcagatggttgggaggctggtcaatggtggttgtggacgtgaggtagtttctgtggcaggaatgggaggaatggggaaaactaccctggcgaagcaaatctatgatgcagcagaagtgaagaaacatttcaaattacgtgcttggatcacttttactcagtctttcaggctagcggaacttctcaaagacatcgttcaacagctccaccaagcaatccgaagtccagttccacaagaaatcaatagcatgaataccaaccagctgaaaacaataattaaagacttcctacagaagaggaggtatctcattatcttggatgatgtgtggcccttatatggatgggatgccttgaagtatgcactacctaattatatttacggcagcagagtgatactaactactcgaaatgcagatatagcctccacaacaagcacggaatctgggggtgaagtctatactttgaagcccttgcccctagtggagtcatgggagctcctgtgcaagaagacattccaagggaattcctgccctcctcatttagagaaaatctgtaactgtgttctgagaaagtgtgaggggctaccccttgctattgtggcaattagtggatttctggctgctaaagataagcgcagaattgatgagtgggaaatggacttgaagaaagtactttcactcagtttcaatgatttaccatactatctaaaatcgtgcttcttgtacctgagcatcttcccagaggactatctaattaagcatatgaggcttattcgattatggatggcagagggcttcattgaagaaaaacaaggaaagacattggaagaggttgcagaggattacctcaatgaactattgaataggagcatgattcaagcagcagagacaacagctgatggaagggtcacaaaatttcgtatccatgatctcttccgcgaaattatcacctccaagacaagaagtcagaactttgccacaatagccaaagagcagaatgtaacattgccagaaaaaatccatcgcctgtcaattcataacacactgcaatatgttcagacaaacaagtgtgcttctcaactacgttctctttttatgttcacagttgctgagaagccatcactacaaagactattcccagccggct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

419

Amino Acids

47.73

Weight (kDa)

8.72

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccII CGCG 1 cut(s) 1050
AciI CCGC 2 cut(s) 287, 1048
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 2 cut(s) 634, 1025
AfaI GTAC 2 cut(s) 783, 836
AfiI CCNNNNNNNGG 2 cut(s) 46, 449
AgsI TTSAA 9 cut(s) 244, 311, 466, 577, 775, 799, 914, 973, 989
AhdI GACNNNNNGTC 1 cut(s) 1074
AjiI CACGTC 1 cut(s) 152
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 5 cut(s) 21, 316, 376, 607, 1007
AluI AGCT 5 cut(s) 21, 316, 376, 607, 1007
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 992
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 1220
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 4 cut(s) 221, 495, 731, 992
ApoI RAATTY 2 cut(s) 634, 1025
Asp700I GAANNNNTTC 2 cut(s) 239, 623
AspLEI GCGC 1 cut(s) 747
AspS9I GGNCC 2 cut(s) 49, 441
AsuHPI GGTGA 3 cut(s) 71, 572, 1051
AsuNHI GCTAGC 1 cut(s) 283
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 626
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 4 cut(s) 233, 507, 718, 1004
BccI CCATC 7 cut(s) 60, 112, 447, 889, 1004, 1140, 1237
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 1 cut(s) 1043
BcoDI GTCTC 1 cut(s) 992
BfaI CTAG 2 cut(s) 284, 590
BfmI CTRYAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 1043
BisI GCNGC 4 cut(s) 222, 496, 732, 993
BlsI GCNGC 4 cut(s) 223, 497, 733, 994
BmcAI AGTACT 1 cut(s) 783
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 49
BmeRI GACNNNNNGTC 1 cut(s) 1074
BmgBI CACGTC 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 49, 441
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 4 cut(s) 52, 208, 448, 852
BmtI GCTAGC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 626
Bpu10I CCTNAGC 1 cut(s) 839
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 198, 628
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 449
Bse118I RCCGGY 1 cut(s) 1253
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 1115
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 198, 628
BseGI GGATG 5 cut(s) 10, 436, 458, 463, 900
BseLI CCNNNNNNNGG 2 cut(s) 46, 449
BseMI GCAATG 1 cut(s) 1115
BseMII CTCAG 5 cut(s) 284, 668, 805, 830, 1212
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 424, 636
BseXI GCAGC 4 cut(s) 233, 507, 718, 1004
BseYI CCCAGC 1 cut(s) 1249
BsgI GTGCAG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 1050
BshFI GGCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 1 cut(s) 1254
BslI CCNNNNNNNGG 2 cut(s) 46, 449
BsmAI GTCTC 1 cut(s) 992
BsnI GGCC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 2 cut(s) 258, 1039
BspACI CCGC 2 cut(s) 287, 1048
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 5 cut(s) 283, 669, 804, 831, 1213
BspFNI CGCG 1 cut(s) 1050
BspMI ACCTGC 1 cut(s) 23
BspOI GCTAGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 1115
BsrFI RCCGGY 1 cut(s) 1253
BsrI ACTGG 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 1253
BssECI CCNNGG 2 cut(s) 198, 628
BssMI GATC 2 cut(s) 258, 1039
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 671, 1216
Bst6I CTCTTC 3 cut(s) 401, 933, 1049
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 285, 1255
BstDEI CTNAG 5 cut(s) 270, 677, 791, 839, 1221
BstEII GGTNACC 1 cut(s) 35
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 5 cut(s) 10, 436, 458, 463, 900
BstFNI CGCG 1 cut(s) 1050
BstHHI GCGC 1 cut(s) 747
BstKTI GATC 2 cut(s) 261, 1042
BstMAI GTCTC 1 cut(s) 992
BstMBI GATC 2 cut(s) 258, 1039
BstMWI GCNNNNNNNGC 5 cut(s) 112, 530, 710, 877, 1094
BstNI CCWGG 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 401
BstUI CGCG 1 cut(s) 1050
BstV1I GCAGC 4 cut(s) 233, 507, 718, 1004
BstV2I GAAGAC 1 cut(s) 626
BsuI GTATCC 1 cut(s) 1043
BsuRI GGCC 1 cut(s) 442
BtgZI GCGATG 1 cut(s) 1118
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 5 cut(s) 10, 436, 458, 463, 900
BtsI GCAGTG 1 cut(s) 1154
BtsIMutI CAGTG 1 cut(s) 1154
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 285, 1255
CaiI CAGNNNCTG 1 cut(s) 1220
CfoI GCGC 1 cut(s) 747
Cfr10I RCCGGY 1 cut(s) 1253
Cfr13I GGNCC 2 cut(s) 49, 441
Csp6I GTAC 2 cut(s) 782, 835
CviAII CATG 4 cut(s) 361, 600, 982, 1037
CviQI GTAC 2 cut(s) 782, 835
DdeI CTNAG 5 cut(s) 270, 677, 791, 839, 1221
DpnI GATC 2 cut(s) 260, 1041
DpnII GATC 2 cut(s) 258, 1039
DriI GACNNNNNGTC 1 cut(s) 1074
Eam1104I CTCTTC 3 cut(s) 401, 933, 1049
Eam1105I GACNNNNNGTC 1 cut(s) 1074
EarI CTCTTC 3 cut(s) 401, 933, 1049
Ecl136II GAGCTC 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 628
Eco24I GRGCYC 1 cut(s) 609
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 607
Eco91I GGTNACC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 607
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 4 cut(s) 364, 603, 985, 1040
FatI CATG 4 cut(s) 360, 599, 981, 1036
FauNDI CATATG 1 cut(s) 873
Fnu4HI GCNGC 4 cut(s) 222, 496, 732, 993
FokI GGATG 5 cut(s) 17, 443, 465, 470, 907
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 4 cut(s) 222, 496, 732, 993
FspBI CTAG 2 cut(s) 284, 590
GlaI GCGC 1 cut(s) 746
GluI GCNGC 4 cut(s) 222, 496, 732, 993
GsaI CCCAGC 1 cut(s) 1253
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 1254
HhaI GCGC 1 cut(s) 747
Hin1II CATG 4 cut(s) 364, 603, 985, 1040
Hin6I GCGC 1 cut(s) 745
HinP1I GCGC 1 cut(s) 745
HinfI GANTC 3 cut(s) 551, 596, 985
HpaII CCGG 1 cut(s) 1254
HphI GGTGA 3 cut(s) 71, 572, 1051
Hpy166II GTNNAC 2 cut(s) 149, 1212
Hpy188I TCNGA 4 cut(s) 332, 678, 1080, 1170
Hpy8I GTNNAC 2 cut(s) 149, 1212
HpyAV CCTTC 1 cut(s) 1008
HpyCH4III ACNGT 2 cut(s) 671, 1216
HpyCH4IV ACGT 3 cut(s) 151, 250, 1195
HpyCH4V TGCA 7 cut(s) 32, 221, 473, 524, 615, 947, 1159
HpyF10VI GCNNNNNNNGC 5 cut(s) 112, 530, 710, 877, 1094
HpyF3I CTNAG 5 cut(s) 270, 677, 791, 839, 1221
HpySE526I ACGT 3 cut(s) 151, 250, 1195
Hsp92II CATG 4 cut(s) 364, 603, 985, 1040
HspAI GCGC 1 cut(s) 745
KroI GCCGGC 1 cut(s) 1253
KroNI GCCGGC 1 cut(s) 1255
Kzo9I GATC 2 cut(s) 258, 1039
LmnI GCTCC 5 cut(s) 26, 321, 604, 612, 978
Lsp1109I GCAGC 4 cut(s) 233, 507, 718, 1004
LweI GCATC 4 cut(s) 52, 208, 448, 852
MaeI CTAG 2 cut(s) 284, 590
MaeII ACGT 3 cut(s) 151, 250, 1195
MaeIII GTNAC 4 cut(s) 35, 665, 1018, 1111
MalI GATC 2 cut(s) 260, 1041
MboI GATC 2 cut(s) 258, 1039
MboII GAAGA 8 cut(s) 244, 418, 631, 787, 838, 926, 950, 1036
MhlI GDGCHC 1 cut(s) 609
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 1 cut(s) 24
MroNI GCCGGC 1 cut(s) 1253
MroXI GAANNNNTTC 2 cut(s) 239, 623
MseI TTAA 3 cut(s) 111, 390, 867
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 2 cut(s) 376, 1007
MspI CCGG 1 cut(s) 1254
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 1050
MwoI GCNNNNNNNGC 5 cut(s) 112, 530, 710, 877, 1094
NaeI GCCGGC 1 cut(s) 1255
NdeI CATATG 1 cut(s) 873
NdeII GATC 2 cut(s) 258, 1039
NgoMIV GCCGGC 1 cut(s) 1253
NheI GCTAGC 1 cut(s) 283
NlaIII CATG 4 cut(s) 364, 603, 985, 1040
NmuCI GTSAC 1 cut(s) 1018
PdiI GCCGGC 1 cut(s) 1255
PdmI GAANNNNTTC 2 cut(s) 239, 623
PfeI GAWTC 2 cut(s) 551, 985
PkrI GCNGC 4 cut(s) 223, 497, 733, 994
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
Ppu21I YACGTR 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 1249
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 2 cut(s) 49, 441
PstNI CAGNNNCTG 1 cut(s) 1220
PvuII CAGCTG 2 cut(s) 376, 1007
RsaI GTAC 2 cut(s) 783, 836
RsaNI GTAC 2 cut(s) 782, 835
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 609
SaqAI TTAA 3 cut(s) 111, 390, 867
SatI GCNGC 4 cut(s) 222, 496, 732, 993
Sau3AI GATC 2 cut(s) 258, 1039
Sau96I GGNCC 2 cut(s) 49, 441
ScaI AGTACT 1 cut(s) 783
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 609
SfaNI GCATC 4 cut(s) 52, 208, 448, 852
SfcI CTRYAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SsiI CCGC 2 cut(s) 287, 1048
SspMI CTAG 2 cut(s) 284, 590
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 2 cut(s) 671, 1216
TaiI ACGT 3 cut(s) 154, 253, 1198
TaqI TCGA 3 cut(s) 55, 517, 886
TatI WGTACW 1 cut(s) 781
TfiI GAWTC 2 cut(s) 551, 985
Tru1I TTAA 3 cut(s) 111, 390, 867
Tru9I TTAA 3 cut(s) 111, 390, 867
TscAI CASTG 1 cut(s) 1161
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 4 cut(s) 221, 495, 731, 992
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 5 cut(s) 21, 377, 898, 978, 1136
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 1 cut(s) 1161
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 2 cut(s) 634, 1025
XmnI GAANNNNTTC 2 cut(s) 239, 623
XspI CTAG 2 cut(s) 284, 590
ZrmI AGTACT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.