Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000888

Physical Location & Seq

Genomic Coordinates Forward (+)

35289932 .. 35291422

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG301800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTTGGGAGGCTGGTCAATGGTGGTTGTGGATGTGAGGTAGTTTCTGTGGCAGGAATGGGAGGAATGGGGAAAACTACCCTGGCGAAGCAAGTCTATGATGCAGCAGAAGTGAAGAAACATTTCAAATTACGTGCTTGGATCACTTTTACTCAGTCTTTCAGGCTAGCGGAACTTCTCAAAGACATCGTTCAACAGCTCCACCAAGCAATCCGAAGTCCAGTTCCACAAGAAATCAATAGCATGAATACCAACCAGCTGAAAACAATAATTAAAGACTTCCTACAGAAGAGGAGGTATCTCATTGTCTTGGATGATGTGTGGCACTTATATGCATGGGATGCCTTGAAGTGTGCTTCTCAACTACGTTCTCTTTTTATGTTCACAGTTGCTGAGAAGCCATCACTACAAAGACTATTCCCAGCCGGCTTTGCGCTGCTTAATGTGTTAGATTTGCAAAGTACACCTTTAAATGTTTTCCCAGTTGAAGTTGTGAATCTTTACTTTTTAAAGTATCTGAGCTTGAGAGATACCAGGGTAAAAACCATTCCAAGATTTATAGGGAAGCTTCAGAACCTGGAAACTTTGGATCTTAAGCATTCTCAAGTTACTGAACTCCCAGTTGAAATTCTGAAACTCCAACATCTGCCCTATCTCTTGGTATATCGTTATGAGTTTGTTCCTTACGAAGATTTTCACTCAACATATGGTTTTAAGGTCCTTGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

243

Amino Acids

27.98

Weight (kDa)

9.42

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	3 - 123	2.3e-28	NB-ARC domain
AAA_16	PF13191	8 - 107	2.9e-07	AAA ATPase domain
AAA_22	PF13401	13 - 128	1e-06	AAA domain
NACHT	PF05729	14 - 109	6e-06	NACHT domain
LRR_14	PF23598	121 - 228	5.5e-19	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22710 FvH4_5g23390 FvH4_5g23400 FvH4_5g23400 FvH4_5g23420
malus_domestica	MD06G1024500.v1.1 MD09G1164200.v1.1 MD09G1164500.v1.1 MD17G1163600.v1.1
prunus_persica	Prupe.5G025400_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025600_v2.0.a1
pyrus_communis	pycom06g01980 pycom09g08130 pycom17g15640
rosa_chinensis	RchiOBHm_Chr7g0211261 RchiOBHm_Chr7g0212451 RchiOBHm_Chr7g0212471 RchiOBHm_Chr7g0212481
rosa_laevigata	RLG00000018806
rosa_multiflora	Rmu_sc0005478.1_g000003 Rmu_sc0007576.1_g000003 Rmu_sc0007576.1_g000004 Rmu_sc0007576.1_g000011 Rmu_sc0007576.1_g000012 Rmu_sc0038076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246770 Rroxscaffold_3G00246780 Rroxscaffold_3G00246790 Rroxscaffold_3G00246810 Rroxscaffold_3G00247970
rosa_rugosa	Rorug02G0251500 Rorug07G0124700 Rorug07G0134000 Rorug07G0134100 Rorug07G0134200 Rorug07G0134300 Rorug07G0134400 Rorug07G0134500 Rorug07G0134500 Rorug07G0134700
rosa_samantha	Rh2AG309900 Rh2AG385400 Rh2BG318600 Rh2CG296800 Rh2CG301800 Rh7BG251100 Rh7BG260900 Rh7BG261000 Rh7CG273800 Rh7CG283800 Rh7CG283900 Rh7CG284100 Rh7DG264700 Rh7DG264800 Rh7DG273700 Rh7DG273800 Rh7DG273900
rosa_wichuraiana	Rw2G025080 Rw7G021970 Rw7G022810 Rw7G022820 Rw7G022840 Rw7G022850 Rw7G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	2 cut(s)	149, 597
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	1 cut(s)	554
AfaI	GTAC	1 cut(s)	463
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	127, 194, 349, 488, 626
AjnI	CCWGG	3 cut(s)	81, 533, 576
AluBI	AGCT	4 cut(s)	199, 259, 522, 568
AluI	AGCT	4 cut(s)	199, 259, 522, 568
AlwI	GGATC	2 cut(s)	149, 597
AlwNI	CAGNNNCTG	2 cut(s)	392, 577
ApeKI	GCWGC	2 cut(s)	104, 436
ApoI	RAATTY	1 cut(s)	627
Asp700I	GAANNNNTTC	2 cut(s)	122, 693
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	718
AsuNHI	GCTAGC	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	718
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BbvI	GCAGC	2 cut(s)	116, 423
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	3 cut(s)	83, 535, 578
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	284
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	2 cut(s)	105, 437
BlsI	GCNGC	2 cut(s)	106, 438
Bme1390I	CCNGG	3 cut(s)	83, 535, 578
Bme18I	GGWCC	1 cut(s)	718
BmgT120I	GGNCC	1 cut(s)	718
BmrFI	CCNGG	3 cut(s)	83, 535, 578
BmrI	ACTGGG	2 cut(s)	476, 614
BmsI	GCATC	2 cut(s)	91, 331
BmtI	GCTAGC	1 cut(s)	170
BmuI	ACTGGG	2 cut(s)	476, 614
BpuEI	CTTGAG	2 cut(s)	544, 588
BsaAI	YACGTR	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	81, 534
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	3 cut(s)	221, 482, 620
BseBI	CCWGG	3 cut(s)	83, 535, 578
BseDI	CCNNGG	2 cut(s)	81, 534
BseGI	GGATG	3 cut(s)	38, 319, 346
BseMII	CTCAG	3 cut(s)	167, 384, 509
BseNI	ACTGG	3 cut(s)	221, 482, 620
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	116, 423
BseYI	CCCAGC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	598
Bsp143I	GATC	2 cut(s)	141, 589
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	3 cut(s)	166, 385, 510
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	149, 597
BspTI	CTTAAG	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	221, 482, 620
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	81, 534
BssMI	GATC	2 cut(s)	141, 589
Bst2UI	CCWGG	3 cut(s)	83, 535, 578
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	284
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	168, 427
BstDEI	CTNAG	3 cut(s)	153, 393, 518
BstF5I	GGATG	3 cut(s)	38, 319, 346
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	2 cut(s)	144, 592
BstMBI	GATC	2 cut(s)	141, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 431
BstNI	CCWGG	3 cut(s)	83, 535, 578
BstSCI	CCNGG	3 cut(s)	81, 533, 576
BstSFI	CTRYAG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	116, 423
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	38, 319, 346
Cac8I	GCNNGC	2 cut(s)	168, 427
CaiI	CAGNNNCTG	2 cut(s)	392, 577
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	718
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	2 cut(s)	244, 336
CviJI	RGCY	9 cut(s)	13, 166, 199, 259, 400, 425, 429, 522, 568
CviKI_1	RGCY	9 cut(s)	13, 166, 199, 259, 400, 425, 429, 522, 568
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	3 cut(s)	153, 393, 518
DpnI	GATC	2 cut(s)	143, 591
DpnII	GATC	2 cut(s)	141, 589
DraI	TTTAAA	2 cut(s)	471, 510
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRII	CCWGG	3 cut(s)	81, 533, 576
EcoT22I	ATGCAT	1 cut(s)	337
FaeI	CATG	2 cut(s)	247, 339
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FatI	CATG	2 cut(s)	243, 335
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	2 cut(s)	105, 437
FokI	GGATG	3 cut(s)	45, 326, 353
Fsp4HI	GCNGC	2 cut(s)	105, 437
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	2 cut(s)	105, 437
GsaI	CCCAGC	1 cut(s)	425
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	2 cut(s)	247, 339
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	1 cut(s)	426
Hpy166II	GTNNAC	2 cut(s)	384, 464
Hpy188I	TCNGA	4 cut(s)	215, 519, 573, 633
Hpy8I	GTNNAC	2 cut(s)	384, 464
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	133, 367
HpyCH4V	TGCA	4 cut(s)	104, 335, 457, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 431
HpyF3I	CTNAG	3 cut(s)	153, 393, 518
HpySE526I	ACGT	2 cut(s)	133, 367
Hsp92II	CATG	2 cut(s)	247, 339
HspAI	GCGC	1 cut(s)	434
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	141, 589
LmnI	GCTCC	1 cut(s)	204
Lsp1109I	GCAGC	2 cut(s)	116, 423
LweI	GCATC	2 cut(s)	91, 331
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	2 cut(s)	133, 367
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	2 cut(s)	143, 591
MboI	GATC	2 cut(s)	141, 589
MboII	GAAGA	3 cut(s)	127, 301, 701
MflI	RGATCY	1 cut(s)	589
MluCI	AATT	3 cut(s)	128, 270, 627
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	5 cut(s)	3, 31, 56, 285, 288
Mph1103I	ATGCAT	1 cut(s)	337
MroNI	GCCGGC	1 cut(s)	425
MroXI	GAANNNNTTC	2 cut(s)	122, 693
MseI	TTAA	6 cut(s)	273, 441, 470, 509, 594, 714
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	259
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	3 cut(s)	83, 535, 578
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	3 cut(s)	83, 535, 578
MwoI	GCNNNNNNNGC	2 cut(s)	341, 431
NaeI	GCCGGC	1 cut(s)	427
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	2 cut(s)	141, 589
NgoMIV	GCCGGC	1 cut(s)	425
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	247, 339
NsiI	ATGCAT	1 cut(s)	337
PctI	GAATGC	1 cut(s)	598
PdiI	GCCGGC	1 cut(s)	427
PdmI	GAANNNNTTC	2 cut(s)	122, 693
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	106, 438
Ppu21I	YACGTR	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	718
Psp5II	RGGWCCY	1 cut(s)	718
Psp6I	CCWGG	3 cut(s)	81, 533, 576
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	3 cut(s)	81, 533, 576
PspPI	GGNCC	1 cut(s)	718
PspPPI	RGGWCCY	1 cut(s)	718
PstNI	CAGNNNCTG	2 cut(s)	392, 577
PsuI	RGATCY	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	6 cut(s)	273, 441, 470, 509, 594, 714
SatI	GCNGC	2 cut(s)	105, 437
Sau3AI	GATC	2 cut(s)	141, 589
Sau96I	GGNCC	1 cut(s)	718
ScrFI	CCNGG	3 cut(s)	83, 535, 578
SfaNI	GCATC	2 cut(s)	91, 331
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	718
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	3 cut(s)	523, 593, 603
SmoI	CTYRAG	3 cut(s)	523, 593, 603
Sse9I	AATT	3 cut(s)	128, 270, 627
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	81, 533, 576
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	136, 370
TasI	AATT	3 cut(s)	128, 270, 627
TatI	WGTACW	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	6 cut(s)	273, 441, 470, 509, 594, 714
Tru9I	TTAA	6 cut(s)	273, 441, 470, 509, 594, 714
TseI	GCWGC	2 cut(s)	104, 436
TspDTI	ATGAA	1 cut(s)	260
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	1 cut(s)	627
XmnI	GAANNNNTTC	2 cut(s)	122, 693
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.