Rmu_sc0007576.1_g000011

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007576.1
OG0000888
Physical Location & Seq
Reverse (-)
49190 .. 50605
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007576.1_g000011.1.cds

Sequence Viewer

Length: 1416 bp
atgattcaagctgctgacacaacatctgatggaagggtcaagaacattcgtgttcatgacctttttcgagagattatcacctctaagataagagatcagaactttgccacaatatctaaagagcaaaatgttccctggcctgataaagtgcgccgcctgtcagtgcataactcaatgcaatatgtacagaaaaacaggtgtgtttctcaactgcgttctctatttatgtttagagttgccgagaagccattactacaaaattattttcctggagggttcagacttcttaatgtcttagacttgcaaaatgcacctctaaatgttttcccagttgaagttgtcaaccttttctttttgaagtatctgagtttgaaaggtaccaaggtgaaaaccattccaaggttcattgggaagcttcaaaacctggagactttggaccttaaacattctctggttactgaactcccagttgaaatcttaaagctcgaacatctacgtcatctcctggtatatcgttatgaatttgtaccttatggagattttcactcaaaatatggtttcaaggtacttgcgaaaattggggttttgacatcccttcaaaagctctgtttcatcaaggcaaacgaagatggtggtgccatattaagagagctcaggaacctagttcagttgagaaggttaggcattgtacagatgagaaaagaagatggaaaagttctttgttcatcaattgaaaagctgaacaaactttgcacgttgtccataacttcagtagaagaggatgagattattgatttgcagcacctttcttctccccctctactgcttcagcgcctctacttgcgaggacggttggagacaatacctcactggattccttctctgcatagccttgccaggttatatttgaaatggagtaggttaaaggatgatccacttgtattccttcaatatttgcccaatctagtgcacctcgaactatctcaggtgtttgaaggagacacattatgctttgaagctggagggttcaagaagctcaaacatttgggtatcgacgaatttgagggacttagatgcatacaggtgcagttgggagcaatgccttctgtaaaaaagctaagcatccagcgctgcaagttattggagaaggtgccgtcaggcattgaacacctgagcaaattgaaggtgcttgagtttttcgatatgccagaaacattaatcaagactctacctccacatgagaaagacaatgattattggaaagttgcacatatccccgaagtttatttcacctactggaaagagtgtggatgggaggtctatcctctagagggtttgagtgaaggagaaaactttcctcatgatcagcctagttctgtcatgaagagccacgaacttgaaactcgttggaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

471

Amino Acids

54.72

Weight (kDa)

9.01

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 3 cut(s) 377, 635, 1150
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 926
AcsI RAATTY 2 cut(s) 521, 1058
AcuI CTGAAG 2 cut(s) 753, 812
AfaI GTAC 5 cut(s) 186, 379, 528, 567, 690
AfeI AGCGCT 1 cut(s) 1130
AfiI CCNNNNNNNGG 2 cut(s) 399, 1331
AjnI CCWGG 5 cut(s) 134, 268, 423, 504, 896
AluBI AGCT 9 cut(s) 11, 415, 484, 604, 652, 739, 1019, 1036, 1117
AluI AGCT 9 cut(s) 11, 415, 484, 604, 652, 739, 1019, 1036, 1117
Alw21I GWGCWC 2 cut(s) 654, 972
Alw26I GTCTC 3 cut(s) 422, 851, 993
Alw44I GTGCAC 1 cut(s) 968
AlwI GGATC 1 cut(s) 926
Aor51HI AGCGCT 1 cut(s) 1130
AoxI GGCC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 968
ApeKI GCWGC 3 cut(s) 11, 799, 1131
ApoI RAATTY 2 cut(s) 521, 1058
AseI ATTAAT 1 cut(s) 1217
Asp700I GAANNNNTTC 1 cut(s) 1353
Asp718I GGTACC 1 cut(s) 377
AspLEI GCGC 3 cut(s) 153, 834, 1131
AspS9I GGNCC 1 cut(s) 436
AsuHPI GGTGA 3 cut(s) 70, 397, 1282
AvaII GGWCC 1 cut(s) 436
BaeGI GKGCMC 1 cut(s) 972
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BanI GGYRCC 3 cut(s) 377, 635, 1150
BanII GRGCYC 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 654, 972
BbvI GCAGC 2 cut(s) 811, 1118
BccI CCATC 4 cut(s) 23, 623, 701, 1305
BceAI ACGGC 1 cut(s) 1138
BciT130I CCWGG 5 cut(s) 136, 270, 425, 506, 898
BclI TGATCA 1 cut(s) 1363
BcoDI GTCTC 3 cut(s) 422, 851, 993
BfaI CTAG 4 cut(s) 662, 965, 1328, 1371
BfoI RGCGCY 2 cut(s) 835, 1132
BisI GCNGC 4 cut(s) 12, 154, 800, 1132
BlpI GCTNAGC 1 cut(s) 1118
BlsI GCNGC 4 cut(s) 13, 155, 801, 1133
Bme1390I CCNGG 5 cut(s) 136, 270, 425, 506, 898
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 4 cut(s) 379, 637, 659, 1152
BmrFI CCNGG 5 cut(s) 136, 270, 425, 506, 898
BmrI ACTGGG 2 cut(s) 323, 461
BmsI GCATC 2 cut(s) 1064, 1131
BmuI ACTGGG 2 cut(s) 323, 461
BpmI CTGGAG 3 cut(s) 291, 446, 1041
Bpu10I CCTNAGC 2 cut(s) 653, 1172
Bpu1102I GCTNAGC 1 cut(s) 1118
BpuEI CTTGAG 1 cut(s) 1211
BsaJI CCNNGG 3 cut(s) 134, 381, 398
BsaXI ACNNNNNCTCC 4 cut(s) 486, 516, 1216, 1246
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 1331
Bse1I ACTGG 4 cut(s) 329, 467, 875, 1301
Bse3DI GCAATG 1 cut(s) 1104
BseBI CCWGG 5 cut(s) 136, 270, 425, 506, 898
BseDI CCNNGG 3 cut(s) 134, 381, 398
BseGI GGATG 5 cut(s) 590, 787, 934, 1122, 1316
BseLI CCNNNNNNNGG 2 cut(s) 399, 1331
BseMI GCAATG 1 cut(s) 1104
BseMII CTCAG 4 cut(s) 356, 667, 998, 1163
BseNI ACTGG 4 cut(s) 329, 467, 875, 1301
BseSI GKGCMC 1 cut(s) 972
BseXI GCAGC 2 cut(s) 811, 1118
BsgI GTGCAG 1 cut(s) 1106
BshFI GGCC 1 cut(s) 139
BshNI GGYRCC 3 cut(s) 377, 635, 1150
BsiHKAI GWGCWC 2 cut(s) 654, 972
BslFI GGGAC 1 cut(s) 1080
BslI CCNNNNNNNGG 2 cut(s) 399, 1331
BsmAI GTCTC 3 cut(s) 422, 851, 993
BsmFI GGGAC 1 cut(s) 1080
BsnI GGCC 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 654, 972
Bsp1407I TGTACA 2 cut(s) 184, 688
Bsp143I GATC 3 cut(s) 94, 931, 1363
Bsp1720I GCTNAGC 1 cut(s) 1118
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 4 cut(s) 357, 666, 997, 1164
BspHI TCATGA 3 cut(s) 55, 1360, 1380
BspLI GGNNCC 4 cut(s) 379, 637, 659, 1152
BspPI GGATC 1 cut(s) 926
BspQI GCTCTTC 1 cut(s) 1379
BspT107I GGYRCC 3 cut(s) 377, 635, 1150
BsrDI GCAATG 1 cut(s) 1104
BsrGI TGTACA 2 cut(s) 184, 688
BsrI ACTGG 4 cut(s) 329, 467, 875, 1301
BssECI CCNNGG 3 cut(s) 134, 381, 398
BssMI GATC 3 cut(s) 94, 931, 1363
BssT1I CCWWGG 2 cut(s) 381, 398
Bst2UI CCWGG 5 cut(s) 136, 270, 425, 506, 898
Bst4CI ACNGT 1 cut(s) 852
Bst6I CTCTTC 2 cut(s) 771, 1379
BstAUI TGTACA 2 cut(s) 184, 688
BstDEI CTNAG 8 cut(s) 84, 295, 365, 653, 984, 1070, 1118, 1172
BstF5I GGATG 5 cut(s) 590, 787, 934, 1122, 1316
BstH2I RGCGCY 2 cut(s) 835, 1132
BstHHI GCGC 3 cut(s) 153, 834, 1131
BstKTI GATC 3 cut(s) 97, 934, 1366
BstMAI GTCTC 3 cut(s) 422, 851, 993
BstMBI GATC 3 cut(s) 94, 931, 1363
BstMWI GCNNNNNNNGC 1 cut(s) 1128
BstNI CCWGG 5 cut(s) 136, 270, 425, 506, 898
BstSCI CCNGG 5 cut(s) 134, 268, 423, 504, 896
BstSLI GKGCMC 1 cut(s) 972
BstV1I GCAGC 2 cut(s) 811, 1118
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 5 cut(s) 590, 787, 934, 1122, 1316
BtsIMutI CAGTG 2 cut(s) 168, 868
CciI TCATGA 3 cut(s) 55, 1360, 1380
CfoI GCGC 3 cut(s) 153, 834, 1131
Cfr13I GGNCC 1 cut(s) 436
Csp6I GTAC 5 cut(s) 185, 378, 527, 566, 689
CviAII CATG 4 cut(s) 56, 1238, 1361, 1381
CviQI GTAC 5 cut(s) 185, 378, 527, 566, 689
DdeI CTNAG 8 cut(s) 84, 295, 365, 653, 984, 1070, 1118, 1172
DpnI GATC 3 cut(s) 96, 933, 1365
DpnII GATC 3 cut(s) 94, 931, 1363
Eam1104I CTCTTC 2 cut(s) 771, 1379
EarI CTCTTC 2 cut(s) 771, 1379
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 2 cut(s) 381, 398
Eco24I GRGCYC 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 436
Eco47III AGCGCT 1 cut(s) 1130
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 2 cut(s) 753, 812
EcoICRI GAGCTC 1 cut(s) 652
EcoRII CCWGG 5 cut(s) 134, 268, 423, 504, 896
EcoT14I CCWWGG 2 cut(s) 381, 398
EcoT22I ATGCAT 1 cut(s) 1079
EcoT38I GRGCYC 1 cut(s) 654
ErhI CCWWGG 2 cut(s) 381, 398
FaeI CATG 4 cut(s) 59, 1241, 1364, 1384
FaqI GGGAC 1 cut(s) 1080
FatI CATG 4 cut(s) 55, 1237, 1360, 1380
FbaI TGATCA 1 cut(s) 1363
Fnu4HI GCNGC 4 cut(s) 12, 154, 800, 1132
FokI GGATG 5 cut(s) 577, 794, 941, 1109, 1323
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 4 cut(s) 12, 154, 800, 1132
FspBI CTAG 4 cut(s) 662, 965, 1328, 1371
GlaI GCGC 3 cut(s) 152, 833, 1130
GluI GCNGC 4 cut(s) 12, 154, 800, 1132
GsuI CTGGAG 3 cut(s) 291, 446, 1041
HaeII RGCGCY 2 cut(s) 835, 1132
HaeIII GGCC 1 cut(s) 139
HhaI GCGC 3 cut(s) 153, 834, 1131
Hin1II CATG 4 cut(s) 59, 1241, 1364, 1384
Hin6I GCGC 3 cut(s) 151, 832, 1129
HinP1I GCGC 3 cut(s) 151, 832, 1129
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 3 cut(s) 4, 874, 1225
HphI GGTGA 3 cut(s) 70, 397, 1282
Hpy166II GTNNAC 2 cut(s) 343, 970
Hpy188I TCNGA 4 cut(s) 28, 99, 281, 366
Hpy188III TCNNGA 9 cut(s) 40, 56, 68, 655, 1030, 1222, 1328, 1361, 1381
Hpy8I GTNNAC 2 cut(s) 343, 970
Hpy99I CGWCG 1 cut(s) 1058
HpyCH4III ACNGT 1 cut(s) 852
HpyCH4IV ACGT 2 cut(s) 496, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 1128
HpyF3I CTNAG 8 cut(s) 84, 295, 365, 653, 984, 1070, 1118, 1172
HpySE526I ACGT 2 cut(s) 496, 755
Hsp92II CATG 4 cut(s) 59, 1241, 1364, 1384
HspAI GCGC 3 cut(s) 151, 832, 1129
KpnI GGTACC 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 1363
Kzo9I GATC 3 cut(s) 94, 931, 1363
LguI GCTCTTC 1 cut(s) 1379
LmnI GCTCC 1 cut(s) 1094
Lsp1109I GCAGC 2 cut(s) 811, 1118
LweI GCATC 2 cut(s) 1064, 1131
MaeI CTAG 4 cut(s) 662, 965, 1328, 1371
MaeII ACGT 2 cut(s) 496, 755
MaeIII GTNAC 1 cut(s) 454
MalI GATC 3 cut(s) 96, 933, 1365
MboI GATC 3 cut(s) 94, 931, 1363
MboII GAAGA 5 cut(s) 638, 716, 788, 801, 1396
MfeI CAATTG 1 cut(s) 729
MhlI GDGCHC 2 cut(s) 654, 972
MluCI AATT 6 cut(s) 259, 521, 576, 729, 1058, 1178
MlyI GAGTC 1 cut(s) 1219
MmeI TCCRAC 2 cut(s) 834, 1388
Mph1103I ATGCAT 1 cut(s) 1079
MroXI GAANNNNTTC 1 cut(s) 1353
MseI TTAA 6 cut(s) 288, 441, 479, 644, 923, 1217
MslI CAYNNNNRTG 1 cut(s) 1082
MspR9I CCNGG 5 cut(s) 136, 270, 425, 506, 898
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 5 cut(s) 136, 270, 425, 506, 898
MwoI GCNNNNNNNGC 1 cut(s) 1128
NdeII GATC 3 cut(s) 94, 931, 1363
NlaIII CATG 4 cut(s) 59, 1241, 1364, 1384
NlaIV GGNNCC 4 cut(s) 379, 637, 659, 1152
NmeAIII GCCGAG 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 1079
PagI TCATGA 3 cut(s) 55, 1360, 1380
PciSI GCTCTTC 1 cut(s) 1379
PdmI GAANNNNTTC 1 cut(s) 1353
PfeI GAWTC 2 cut(s) 4, 874
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 4 cut(s) 13, 155, 801, 1133
PleI GAGTC 1 cut(s) 1219
PpsI GAGTC 1 cut(s) 1219
PshBI ATTAAT 1 cut(s) 1217
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 5 cut(s) 134, 268, 423, 504, 896
PspGI CCWGG 5 cut(s) 134, 268, 423, 504, 896
PspN4I GGNNCC 4 cut(s) 379, 637, 659, 1152
PspPI GGNCC 1 cut(s) 436
RsaI GTAC 5 cut(s) 186, 379, 528, 567, 690
RsaNI GTAC 5 cut(s) 185, 378, 527, 566, 689
RseI CAYNNNNRTG 1 cut(s) 1082
SacI GAGCTC 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 1379
SaqAI TTAA 6 cut(s) 288, 441, 479, 644, 923, 1217
SatI GCNGC 4 cut(s) 12, 154, 800, 1132
Sau3AI GATC 3 cut(s) 94, 931, 1363
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 1 cut(s) 1219
ScrFI CCNGG 5 cut(s) 136, 270, 425, 506, 898
SduI GDGCHC 2 cut(s) 654, 972
SfaNI GCATC 2 cut(s) 1064, 1131
SinI GGWCC 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 1082
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
Sse9I AATT 6 cut(s) 259, 521, 576, 729, 1058, 1178
SsiI CCGC 1 cut(s) 154
SspI AATATT 1 cut(s) 953
SspMI CTAG 4 cut(s) 662, 965, 1328, 1371
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 5 cut(s) 134, 268, 423, 504, 896
StyI CCWWGG 2 cut(s) 381, 398
TaaI ACNGT 1 cut(s) 852
TaiI ACGT 2 cut(s) 499, 758
TaqI TCGA 5 cut(s) 67, 486, 975, 1053, 1200
TasI AATT 6 cut(s) 259, 521, 576, 729, 1058, 1178
TatI WGTACW 2 cut(s) 184, 688
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 2 cut(s) 4, 874
Tru1I TTAA 6 cut(s) 288, 441, 479, 644, 923, 1217
Tru9I TTAA 6 cut(s) 288, 441, 479, 644, 923, 1217
TscAI CASTG 2 cut(s) 168, 875
TseI GCWGC 3 cut(s) 11, 799, 1131
TspDTI ATGAA 6 cut(s) 44, 394, 534, 601, 714, 1397
TspRI CASTG 2 cut(s) 168, 875
VneI GTGCAC 1 cut(s) 968
VpaK11BI GGWCC 1 cut(s) 436
VspI ATTAAT 1 cut(s) 1217
XapI RAATTY 2 cut(s) 521, 1058
XbaI TCTAGA 1 cut(s) 1327
XmnI GAANNNNTTC 1 cut(s) 1353
XspI CTAG 4 cut(s) 662, 965, 1328, 1371
Zsp2I ATGCAT 1 cut(s) 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.