Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000888

Physical Location & Seq

Genomic Coordinates Forward (+)

10543396 .. 10545399

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGATGGTGTGGAATGTTTGTCAACCTGTGAAGGGATCTATAAGGAACACATTTATCACCGCCGCCTCTGCCGCCGCCGTCGTCACCACCGTCTTTCATTGGCCTCCGCCAATAAGTCTCGGGCAACAAACCTCCATGAACTTCTGCAATGCCCTGTCTGCACAAACTCTATGTACCCACCAATCAATCAGAGAACAACTTGGAGACATCAGATGTCTGGCATTAGAGAAAGTCGCGGAGTCACTGAAACTTCCTTGCAAGTATTGCTCTTTGGGATGCATGGAGATCTTTCTTTACTACAAGAAAGTTAAGCATGAGGCTAAGTGTGACTTCAGACCATACAATTGCCCCTACCCTGGATCTGTGTGCTCAGCAACCGGGGATATTGCTTTTCTGGTTGACCATCTGATAGTTGATCACAAGGTTGATATGCACAATGCATGCAGCTTTGATCATCTTTATGTTAAGTCCACTCCCTGGGAGACAGAAAATGAAGCCAAGATGCTTATGGTATTTAACTGTTACAGCCATTACTTCTGCCTGCATTTTGAAGCCTTCCAGCTGGGCATTGCACCAGTTTACATTGCATTTCTCCGTTTCATGGGCAATGCGGTTGAAGCCCGAACCTTCAGCTACAGACTGGAGGTTGGAGCACATGGAAGGAAACTAATATGGGAAGGAACCCCTCGGAGCATACGTGAGAGCCATCAGAAGGTAAGGGATAGCCATGACGGTCTCATAATCCAGCGTAACATGGCACTCTTTTTTTCCACTGGAGAAAGGAAGGAGTTCAAGCTTCGGGTCACCGGACAGATATGGAAGACCGAGAGCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

278

Amino Acids

31.71

Weight (kDa)

8.52

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sina_ZnF	PF21361	77 - 152	9.6e-27	Sina, zinc finger
Sina_TRAF	PF03145	172 - 269	2e-31	Sina, TRAF-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22710 FvH4_5g23390 FvH4_5g23400 FvH4_5g23400 FvH4_5g23420
malus_domestica	MD06G1024500.v1.1 MD09G1164200.v1.1 MD09G1164500.v1.1 MD17G1163600.v1.1
prunus_persica	Prupe.5G025400_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025600_v2.0.a1
pyrus_communis	pycom06g01980 pycom09g08130 pycom17g15640
rosa_chinensis	RchiOBHm_Chr7g0211261 RchiOBHm_Chr7g0212451 RchiOBHm_Chr7g0212471 RchiOBHm_Chr7g0212481
rosa_laevigata	RLG00000018806
rosa_multiflora	Rmu_sc0005478.1_g000003 Rmu_sc0007576.1_g000003 Rmu_sc0007576.1_g000004 Rmu_sc0007576.1_g000011 Rmu_sc0007576.1_g000012 Rmu_sc0038076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246770 Rroxscaffold_3G00246780 Rroxscaffold_3G00246790 Rroxscaffold_3G00246810 Rroxscaffold_3G00247970
rosa_rugosa	Rorug02G0251500 Rorug07G0124700 Rorug07G0134000 Rorug07G0134100 Rorug07G0134200 Rorug07G0134300 Rorug07G0134400 Rorug07G0134500 Rorug07G0134500 Rorug07G0134700
rosa_samantha	Rh2AG309900 Rh2AG385400 Rh2BG318600 Rh2CG296800 Rh2CG301800 Rh7BG251100 Rh7BG260900 Rh7BG261000 Rh7CG273800 Rh7CG283800 Rh7CG283900 Rh7CG284100 Rh7DG264700 Rh7DG264800 Rh7DG273700 Rh7DG273800 Rh7DG273900
rosa_wichuraiana	Rw2G025080 Rw7G021970 Rw7G022810 Rw7G022820 Rw7G022840 Rw7G022850 Rw7G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccII	CGCG	1 cut(s)	236
AciI	CCGC	7 cut(s)	60, 63, 72, 75, 107, 236, 611
AclWI	GGATC	2 cut(s)	43, 367
AcuI	CTGAAG	2 cut(s)	316, 613
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	5 cut(s)	32, 356, 477, 601, 712
AgsI	TTSAA	3 cut(s)	551, 617, 793
AjnI	CCWGG	2 cut(s)	355, 476
AluBI	AGCT	4 cut(s)	447, 562, 633, 796
AluI	AGCT	4 cut(s)	447, 562, 633, 796
Alw21I	GWGCWC	3 cut(s)	371, 655, 833
Alw26I	GTCTC	4 cut(s)	122, 198, 476, 740
AlwI	GGATC	2 cut(s)	43, 367
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	788
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	3 cut(s)	49, 76, 796
AvaI	CYCGRG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	827
Bbv12I	GWGCWC	3 cut(s)	371, 655, 833
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	2 cut(s)	411, 714
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	357, 478
BclI	TGATCA	2 cut(s)	415, 451
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	4 cut(s)	122, 198, 476, 740
BfaI	CTAG	1 cut(s)	835
BfmI	CTRYAG	1 cut(s)	634
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	4 cut(s)	63, 72, 75, 445
BlpI	GCTNAGC	1 cut(s)	370
BlsI	GCNGC	4 cut(s)	64, 73, 76, 446
Bme1390I	CCNGG	3 cut(s)	357, 379, 478
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	682
BmrFI	CCNGG	3 cut(s)	357, 379, 478
BmsI	GCATC	2 cut(s)	266, 492
BpiI	GAAGAC	1 cut(s)	827
BpmI	CTGGAG	2 cut(s)	662, 795
Bpu1102I	GCTNAGC	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	5 cut(s)	355, 378, 476, 477, 686
BsaWI	WCCGGW	1 cut(s)	806
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 356, 477, 601, 712
Bse1I	ACTGG	3 cut(s)	575, 645, 778
Bse3DI	GCAATG	4 cut(s)	154, 567, 582, 613
BseBI	CCWGG	2 cut(s)	357, 478
BseDI	CCNNGG	5 cut(s)	355, 378, 476, 477, 686
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	5 cut(s)	32, 356, 477, 601, 712
BseMI	GCAATG	4 cut(s)	154, 567, 582, 613
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	575, 645, 778
BseXI	GCAGC	1 cut(s)	456
BseYI	CCCAGC	1 cut(s)	562
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	103
BsiHKAI	GWGCWC	3 cut(s)	371, 655, 833
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	378, 807
BslI	CCNNNNNNNGG	5 cut(s)	32, 356, 477, 601, 712
BsmAI	GTCTC	4 cut(s)	122, 198, 476, 740
BsnI	GGCC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	740
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	371, 655, 833
Bsp143I	GATC	5 cut(s)	35, 285, 359, 415, 451
Bsp1720I	GCTNAGC	1 cut(s)	370
BspACI	CCGC	7 cut(s)	60, 63, 72, 75, 107, 236, 611
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	682
BspPI	GGATC	2 cut(s)	43, 367
BspTNI	GGTCTC	1 cut(s)	740
BsrDI	GCAATG	4 cut(s)	154, 567, 582, 613
BsrI	ACTGG	3 cut(s)	575, 645, 778
BssECI	CCNNGG	5 cut(s)	355, 378, 476, 477, 686
BssMI	GATC	5 cut(s)	35, 285, 359, 415, 451
Bst2UI	CCWGG	2 cut(s)	357, 478
Bst4CI	ACNGT	3 cut(s)	91, 521, 734
BstAPI	GCANNNNNTGC	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	442, 542
BstDEI	CTNAG	2 cut(s)	321, 370
BstEII	GGTNACC	1 cut(s)	802
BstF5I	GGATG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	236
BstKTI	GATC	5 cut(s)	38, 288, 362, 418, 454
BstMAI	GTCTC	4 cut(s)	122, 198, 476, 740
BstMBI	GATC	5 cut(s)	35, 285, 359, 415, 451
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 71, 158, 264, 617
BstNI	CCWGG	2 cut(s)	357, 478
BstNSI	RCATGY	1 cut(s)	444
BstPI	GGTNACC	1 cut(s)	802
BstSCI	CCNGG	3 cut(s)	355, 377, 476
BstSFI	CTRYAG	1 cut(s)	634
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	3 cut(s)	35, 285, 359
BstYI	RGATCY	3 cut(s)	35, 285, 359
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	242, 771
Cac8I	GCNNGC	2 cut(s)	442, 542
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	8 cut(s)	136, 280, 314, 441, 601, 656, 728, 754
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	321, 370
DpnI	GATC	5 cut(s)	37, 287, 361, 417, 453
DpnII	GATC	5 cut(s)	35, 285, 359, 415, 451
EciI	GGCGGA	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	740
Eco57I	CTGAAG	2 cut(s)	316, 613
Eco88I	CYCGRG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	802
EcoO65I	GGTNACC	1 cut(s)	802
EcoRII	CCWGG	2 cut(s)	355, 476
EcoT22I	ATGCAT	2 cut(s)	281, 442
FaeI	CATG	8 cut(s)	139, 283, 317, 444, 604, 659, 731, 757
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	8 cut(s)	135, 279, 313, 440, 600, 655, 727, 753
FbaI	TGATCA	2 cut(s)	415, 451
Fnu4HI	GCNGC	4 cut(s)	63, 72, 75, 445
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	4 cut(s)	63, 72, 75, 445
FspBI	CTAG	1 cut(s)	835
GluI	GCNGC	4 cut(s)	63, 72, 75, 445
GsaI	CCCAGC	1 cut(s)	566
GsuI	CTGGAG	2 cut(s)	662, 795
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	2 cut(s)	378, 807
Hin1II	CATG	8 cut(s)	139, 283, 317, 444, 604, 659, 731, 757
HincII	GTYRAC	2 cut(s)	23, 400
HindII	GTYRAC	2 cut(s)	23, 400
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	2 cut(s)	378, 807
HphI	GGTGA	3 cut(s)	49, 76, 796
Hpy166II	GTNNAC	4 cut(s)	23, 400, 471, 580
Hpy188I	TCNGA	6 cut(s)	191, 212, 335, 408, 690, 711
Hpy8I	GTNNAC	4 cut(s)	23, 400, 471, 580
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	7 cut(s)	25, 565, 637, 654, 671, 706, 778
HpyCH4III	ACNGT	3 cut(s)	91, 521, 734
HpyCH4IV	ACGT	1 cut(s)	697
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 71, 158, 264, 617
HpyF3I	CTNAG	2 cut(s)	321, 370
HpySE526I	ACGT	1 cut(s)	697
Hsp92II	CATG	8 cut(s)	139, 283, 317, 444, 604, 659, 731, 757
Ksp22I	TGATCA	2 cut(s)	415, 451
Kzo9I	GATC	5 cut(s)	35, 285, 359, 415, 451
LmnI	GCTCC	2 cut(s)	650, 690
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	2 cut(s)	266, 492
MaeI	CTAG	1 cut(s)	835
MaeII	ACGT	1 cut(s)	697
MaeIII	GTNAC	6 cut(s)	82, 240, 326, 521, 749, 802
MalI	GATC	5 cut(s)	37, 287, 361, 417, 453
MboI	GATC	5 cut(s)	35, 285, 359, 415, 451
MboII	GAAGA	1 cut(s)	832
MfeI	CAATTG	1 cut(s)	343
MflI	RGATCY	3 cut(s)	35, 285, 359
MhlI	GDGCHC	3 cut(s)	371, 655, 833
MluCI	AATT	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	6 cut(s)	76, 114, 142, 310, 637, 696
Mph1103I	ATGCAT	2 cut(s)	281, 442
MroXI	GAANNNNTTC	1 cut(s)	788
MseI	TTAA	3 cut(s)	309, 465, 516
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	2 cut(s)	378, 807
MspR9I	CCNGG	3 cut(s)	357, 379, 478
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	2 cut(s)	357, 478
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	5 cut(s)	68, 71, 158, 264, 617
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	5 cut(s)	35, 285, 359, 415, 451
NlaIII	CATG	8 cut(s)	139, 283, 317, 444, 604, 659, 731, 757
NlaIV	GGNNCC	1 cut(s)	682
NmuCI	GTSAC	4 cut(s)	82, 240, 326, 802
NsiI	ATGCAT	2 cut(s)	281, 442
NspI	RCATGY	1 cut(s)	444
PaeI	GCATGC	1 cut(s)	444
PasI	CCCWGGG	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 694
PdmI	GAANNNNTTC	1 cut(s)	788
PflMI	CCANNNNNTGG	1 cut(s)	477
PkrI	GCNGC	4 cut(s)	64, 73, 76, 446
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	355, 476
PspEI	GGTNACC	1 cut(s)	802
PspFI	CCCAGC	1 cut(s)	562
PspGI	CCWGG	2 cut(s)	355, 476
PspN4I	GGNNCC	1 cut(s)	682
PsuI	RGATCY	3 cut(s)	35, 285, 359
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	309, 465, 516
SatI	GCNGC	4 cut(s)	63, 72, 75, 445
Sau3AI	GATC	5 cut(s)	35, 285, 359, 415, 451
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	357, 379, 478
SduI	GDGCHC	3 cut(s)	371, 655, 833
SfaNI	GCATC	2 cut(s)	266, 492
SfcI	CTRYAG	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	459
SphI	GCATGC	1 cut(s)	444
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	7 cut(s)	60, 63, 72, 75, 107, 236, 611
SspMI	CTAG	1 cut(s)	835
StyD4I	CCNGG	3 cut(s)	355, 377, 476
TaaI	ACNGT	3 cut(s)	91, 521, 734
TaiI	ACGT	1 cut(s)	700
TasI	AATT	1 cut(s)	343
TauI	GCSGC	3 cut(s)	65, 74, 77
Tru1I	TTAA	3 cut(s)	309, 465, 516
Tru9I	TTAA	3 cut(s)	309, 465, 516
TscAI	CASTG	2 cut(s)	249, 778
TseFI	GTSAC	4 cut(s)	82, 240, 326, 802
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	4 cut(s)	82, 240, 326, 802
TspDTI	ATGAA	4 cut(s)	86, 152, 507, 589
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	2 cut(s)	249, 778
Van91I	CCANNNNNTGG	1 cut(s)	477
XceI	RCATGY	1 cut(s)	444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	1 cut(s)	835
Zsp2I	ATGCAT	2 cut(s)	281, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.