Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000888

Physical Location & Seq

Genomic Coordinates Reverse (-)

28168877 .. 28170019

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG264800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGGAGAGTGCAGTAAAGTTTCTACTTGACAAGCTTGCACCTCTTTTCGAAAATGAGTTGCAACTTTTGAGAGGGGTTAGGGAAGAAATTTTGTATCTAAGAGGAGAACTGGAGCGCATGACGGCTTTCCTGAGGGTTGCTGATGCATATGAAGAGAGTGATGCGGAACTCAAAGTATGGGTTAAACAACTAAGAGACATTGCTCACGAAAGTGAAGATGTTCTTGATGAATTTACCCTTCTGCAAGCACATGATCATGGGGAGGGATTATATGGTTCAATCCATAAGCTTTCTTGCTGCATCAAGACTACAAAAGCTCGATATCGAATTGCTTCGGAGTTACGAGCCATAAACTCCAGGATCAAAAAAATCTCTGAGGTTCATAAGCGACTCCGCCACAAATTCAATATGGCTGAACAAGGCTCAAGCTCCAAAAGTGCAAGTTACCTGTTGGAGGACCATCGAGGTGATGCTTTACTTCTAGAGAAAACTGATATAGTGGGCATAGACGAGCCTATTAAGCAGATGGTTGGGAGGCTGGTCAATGGTGGTTGTGGACGTGAGGTAGTTTCTGTGGCAGGAATGGGAGGAATGGGGAAAACTACCCTGGCGAAGCAAGTCTATGATGCAACAGAAGTGAAGAAACATTTCAAATTACGTGCTTGGATCACTTTTACTCAGTCTTTCAGGCTAGCGGAACTTCTCAAAGACATCGTTCAACAGCTCCACCAAGCAATCCGAAGTCCAGTTCCACAAGAAATCAATAGCATGAATACCAACCAGCTGAAAACAATAATTAAAGACTTCCTACAGAAGAGGAGGTATCTCATTGTCTTGGATGATGTGTGGCACTTATATGGATGGGATGCCTTGAAATATAGCCTCCACAACAAGCACGGAATCTGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

304

Amino Acids

34.94

Weight (kDa)

8.92

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 87	4.4e-24	Rx N-terminal domain
NB-ARC	PF00931	172 - 298	7.3e-29	NB-ARC domain
AAA_16	PF13191	176 - 283	7.8e-07	AAA ATPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22710 FvH4_5g23390 FvH4_5g23400 FvH4_5g23400 FvH4_5g23420
malus_domestica	MD06G1024500.v1.1 MD09G1164200.v1.1 MD09G1164500.v1.1 MD17G1163600.v1.1
prunus_persica	Prupe.5G025400_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025600_v2.0.a1
pyrus_communis	pycom06g01980 pycom09g08130 pycom17g15640
rosa_chinensis	RchiOBHm_Chr7g0211261 RchiOBHm_Chr7g0212451 RchiOBHm_Chr7g0212471 RchiOBHm_Chr7g0212481
rosa_laevigata	RLG00000018806
rosa_multiflora	Rmu_sc0005478.1_g000003 Rmu_sc0007576.1_g000003 Rmu_sc0007576.1_g000004 Rmu_sc0007576.1_g000011 Rmu_sc0007576.1_g000012 Rmu_sc0038076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246770 Rroxscaffold_3G00246780 Rroxscaffold_3G00246790 Rroxscaffold_3G00246810 Rroxscaffold_3G00247970
rosa_rugosa	Rorug02G0251500 Rorug07G0124700 Rorug07G0134000 Rorug07G0134100 Rorug07G0134200 Rorug07G0134300 Rorug07G0134400 Rorug07G0134500 Rorug07G0134500 Rorug07G0134700
rosa_samantha	Rh2AG309900 Rh2AG385400 Rh2BG318600 Rh2CG296800 Rh2CG301800 Rh7BG251100 Rh7BG260900 Rh7BG261000 Rh7CG273800 Rh7CG283800 Rh7CG283900 Rh7CG284100 Rh7DG264700 Rh7DG264800 Rh7DG273700 Rh7DG273800 Rh7DG273900
rosa_wichuraiana	Rw2G025080 Rw7G021970 Rw7G022810 Rw7G022820 Rw7G022840 Rw7G022850 Rw7G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 167, 397, 698
AclWI	GGATC	2 cut(s)	371, 677
AcsI	RAATTY	3 cut(s)	90, 233, 404
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	282, 409, 655, 722, 877
AjiI	CACGTC	1 cut(s)	563
AjnI	CCWGG	2 cut(s)	359, 609
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	6 cut(s)	37, 292, 320, 432, 727, 787
AluI	AGCT	6 cut(s)	37, 292, 320, 432, 727, 787
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	371, 677
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	3 cut(s)	90, 233, 404
Asp700I	GAANNNNTTC	3 cut(s)	222, 334, 650
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	482
AsuII	TTCGAA	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	694
AvaII	GGWCC	1 cut(s)	460
AxyI	CCTNAGG	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	3 cut(s)	471, 523, 858
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	2 cut(s)	361, 611
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	485, 695
BfmI	CTRYAG	1 cut(s)	812
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	361, 611
Bme18I	GGWCC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	361, 611
BmsI	GCATC	6 cut(s)	136, 154, 312, 463, 619, 859
BmtI	GCTAGC	1 cut(s)	698
BpmI	CTGGAG	2 cut(s)	134, 343
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	412
BsaAI	YACGTR	1 cut(s)	662
BsaJI	CCNNGG	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	117, 749
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	361, 611
BseDI	CCNNGG	1 cut(s)	609
BseGI	GGATG	3 cut(s)	847, 869, 874
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	3 cut(s)	125, 369, 695
BseNI	ACTGG	2 cut(s)	117, 749
BseRI	GAGGAG	2 cut(s)	120, 835
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	256, 363, 669
BspACI	CCGC	4 cut(s)	5, 167, 397, 698
BspCNI	CTCAG	3 cut(s)	126, 370, 694
BspOI	GCTAGC	1 cut(s)	698
BspPI	GGATC	2 cut(s)	371, 677
BspT104I	TTCGAA	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	117, 749
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	3 cut(s)	256, 363, 669
Bst2UI	CCWGG	2 cut(s)	361, 611
Bst6I	CTCTTC	2 cut(s)	150, 812
BstBAI	YACGTR	1 cut(s)	662
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	39, 249, 696
BstDEI	CTNAG	5 cut(s)	101, 134, 194, 378, 681
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	847, 869, 874
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	259, 366, 672
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	256, 363, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 523
BstNI	CCWGG	2 cut(s)	361, 611
BstSCI	CCNGG	2 cut(s)	359, 609
BstSFI	CTRYAG	1 cut(s)	812
BstV1I	GCAGC	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	563
BtsCI	GGATG	3 cut(s)	847, 869, 874
Cac8I	GCNNGC	3 cut(s)	39, 249, 696
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	460
CviAII	CATG	4 cut(s)	121, 254, 260, 772
DdeI	CTNAG	5 cut(s)	101, 134, 194, 378, 681
DpnI	GATC	3 cut(s)	258, 365, 671
DpnII	GATC	3 cut(s)	256, 363, 669
Eam1104I	CTCTTC	2 cut(s)	150, 812
EarI	CTCTTC	2 cut(s)	150, 812
EciI	GGCGGA	2 cut(s)	20, 386
Eco32I	GATATC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	460
Eco81I	CCTNAGG	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	359, 609
EcoRV	GATATC	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	4 cut(s)	124, 257, 263, 775
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	4 cut(s)	120, 253, 259, 771
FauNDI	CATATG	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	3 cut(s)	854, 876, 881
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	485, 695
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	301
GsuI	CTGGAG	2 cut(s)	134, 343
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	124, 257, 263, 775
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	35, 290
HinfI	GANTC	2 cut(s)	393, 903
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	3 cut(s)	340, 379, 743
Hpy188III	TCNNGA	6 cut(s)	133, 209, 227, 307, 485, 907
Hpy8I	GTNNAC	1 cut(s)	560
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	2 cut(s)	562, 661
HpyCH4V	TGCA	8 cut(s)	14, 41, 64, 149, 247, 303, 443, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 523
HpyF3I	CTNAG	5 cut(s)	101, 134, 194, 378, 681
HpySE526I	ACGT	2 cut(s)	562, 661
Hsp92II	CATG	4 cut(s)	124, 257, 263, 775
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	256, 363, 669
LmnI	GCTCC	3 cut(s)	115, 437, 732
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	6 cut(s)	136, 154, 312, 463, 619, 859
MaeI	CTAG	2 cut(s)	485, 695
MaeII	ACGT	2 cut(s)	562, 661
MaeIII	GTNAC	2 cut(s)	342, 446
MalI	GATC	3 cut(s)	258, 365, 671
MboI	GATC	3 cut(s)	256, 363, 669
MboII	GAAGA	5 cut(s)	98, 167, 230, 655, 829
MluCI	AATT	6 cut(s)	90, 233, 330, 404, 656, 798
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	3 cut(s)	222, 334, 650
MseI	TTAA	3 cut(s)	186, 522, 801
MslI	CAYNNNNRTG	4 cut(s)	213, 258, 468, 858
MspA1I	CMGCKG	1 cut(s)	787
MspR9I	CCNGG	2 cut(s)	361, 611
MvaI	CCWGG	2 cut(s)	361, 611
MwoI	GCNNNNNNNGC	2 cut(s)	11, 523
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	3 cut(s)	256, 363, 669
NheI	GCTAGC	1 cut(s)	694
NlaIII	CATG	4 cut(s)	124, 257, 263, 775
NsiI	ATGCAT	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	51
OliI	CACNNNNGTG	1 cut(s)	213
PdmI	GAANNNNTTC	3 cut(s)	222, 334, 650
PfeI	GAWTC	1 cut(s)	903
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	662
Psp6I	CCWGG	2 cut(s)	359, 609
PspGI	CCWGG	2 cut(s)	359, 609
PspPI	GGNCC	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	787
RseI	CAYNNNNRTG	4 cut(s)	213, 258, 468, 858
SaqAI	TTAA	3 cut(s)	186, 522, 801
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	3 cut(s)	256, 363, 669
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	2 cut(s)	361, 611
SfaNI	GCATC	6 cut(s)	136, 154, 312, 463, 619, 859
SfcI	CTRYAG	1 cut(s)	812
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	4 cut(s)	213, 258, 468, 858
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	6 cut(s)	90, 233, 330, 404, 656, 798
SsiI	CCGC	4 cut(s)	5, 167, 397, 698
SspMI	CTAG	2 cut(s)	485, 695
StyD4I	CCNGG	2 cut(s)	359, 609
TaiI	ACGT	2 cut(s)	565, 664
TaqI	TCGA	4 cut(s)	51, 322, 328, 466
TasI	AATT	6 cut(s)	90, 233, 330, 404, 656, 798
TfiI	GAWTC	1 cut(s)	903
Tru1I	TTAA	3 cut(s)	186, 522, 801
Tru9I	TTAA	3 cut(s)	186, 522, 801
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	4 cut(s)	168, 246, 374, 788
TspGWI	ACGGA	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	460
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	3 cut(s)	90, 233, 404
XbaI	TCTAGA	1 cut(s)	484
XmnI	GAANNNNTTC	3 cut(s)	222, 334, 650
XspI	CTAG	2 cut(s)	485, 695
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.