Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000888

Physical Location & Seq

Genomic Coordinates Forward (+)

10564847 .. 10565296

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGGACATCCAAGTCGAGAATATCGACGTCGAAGCAGTGATCGAAGACGTGGTCGGGGGCGTCGACATGGGTCCTTGTGTGGGTGGGGAGCTTCATCTCGGAGTTGTTAGCAATGGAGCTGTTCTTCATGCTGTTGGGGAGCCAGAGGAACTGGAACGCCGTCAACGGAGTCAAACGCCGACATGTTGGGGAGGAGATCGAGGGCGAATGAGTCCCTATCGCGCGGTTTCTACTGTAGCGGTGGCTGATGTAGAAGATTTGGTCGTTTTCGTGGACTTCGTGGCGAGAGGGGATCAGGTTGGTGGCGGTGGCGCCGGAGGAGACGTCGACGGGGGTGGTGCCAGGAATGGAAGGGTAGGTTGTGGTGGCGTGGGAGATGGTGGCCTGAAGGGAGAAGAGGAGAAGGAGAAGGATTGGACCGTGACTGAGGGGAGTCGAGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

149

Amino Acids

15.36

Weight (kDa)

4.4

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22710 FvH4_5g23390 FvH4_5g23400 FvH4_5g23400 FvH4_5g23420
malus_domestica	MD06G1024500.v1.1 MD09G1164200.v1.1 MD09G1164500.v1.1 MD17G1163600.v1.1
prunus_persica	Prupe.5G025400_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025600_v2.0.a1
pyrus_communis	pycom06g01980 pycom09g08130 pycom17g15640
rosa_chinensis	RchiOBHm_Chr7g0211261 RchiOBHm_Chr7g0212451 RchiOBHm_Chr7g0212471 RchiOBHm_Chr7g0212481
rosa_laevigata	RLG00000018806
rosa_multiflora	Rmu_sc0005478.1_g000003 Rmu_sc0007576.1_g000003 Rmu_sc0007576.1_g000004 Rmu_sc0007576.1_g000011 Rmu_sc0007576.1_g000012 Rmu_sc0038076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246770 Rroxscaffold_3G00246780 Rroxscaffold_3G00246790 Rroxscaffold_3G00246810 Rroxscaffold_3G00247970
rosa_rugosa	Rorug02G0251500 Rorug07G0124700 Rorug07G0134000 Rorug07G0134100 Rorug07G0134200 Rorug07G0134300 Rorug07G0134400 Rorug07G0134500 Rorug07G0134500 Rorug07G0134700
rosa_samantha	Rh2AG309900 Rh2AG385400 Rh2BG318600 Rh2CG296800 Rh2CG301800 Rh7BG251100 Rh7BG260900 Rh7BG261000 Rh7CG273800 Rh7CG283800 Rh7CG283900 Rh7CG284100 Rh7DG264700 Rh7DG264800 Rh7DG273700 Rh7DG273800 Rh7DG273900
rosa_wichuraiana	Rw2G025080 Rw7G021970 Rw7G022810 Rw7G022820 Rw7G022840 Rw7G022850 Rw7G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AatII	GACGTC	2 cut(s)	33, 330
AccB1I	GGYRCC	2 cut(s)	314, 341
AccI	GTMKAC	2 cut(s)	66, 330
AccII	CGCG	2 cut(s)	225, 227
AciI	CCGC	4 cut(s)	5, 227, 242, 309
AclWI	GGATC	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	410
AcyI	GRCGYC	4 cut(s)	30, 63, 315, 327
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	185
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	2 cut(s)	94, 122
AluI	AGCT	2 cut(s)	94, 122
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	385
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AspLEI	GCGC	2 cut(s)	227, 317
AspS9I	GGNCC	2 cut(s)	74, 420
AvaII	GGWCC	2 cut(s)	74, 420
BanI	GGYRCC	2 cut(s)	314, 341
BbsI	GAAGAC	1 cut(s)	54
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	318
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	2 cut(s)	74, 420
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	74, 420
BmiI	GGNNCC	4 cut(s)	75, 144, 316, 343
BmrFI	CCNGG	1 cut(s)	346
BoxI	GACNNNNGTC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	54
BsaHI	GRCGYC	4 cut(s)	30, 63, 315, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	3 cut(s)	210, 336, 416
Bsh1236I	CGCG	2 cut(s)	225, 227
BshFI	GGCC	1 cut(s)	387
BshNI	GGYRCC	2 cut(s)	314, 341
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	318
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	42, 199, 295
BspACI	CCGC	4 cut(s)	5, 227, 242, 309
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	225, 227
BspLI	GGNNCC	4 cut(s)	75, 144, 316, 343
BspPI	GGATC	1 cut(s)	303
BspT107I	GGYRCC	2 cut(s)	314, 341
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	159
BssMI	GATC	3 cut(s)	42, 199, 295
BssNI	GRCGYC	4 cut(s)	30, 63, 315, 327
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	2 cut(s)	238, 424
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	4 cut(s)	30, 63, 315, 327
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	2 cut(s)	225, 227
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	227, 317
BstKTI	GATC	3 cut(s)	45, 202, 298
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	3 cut(s)	42, 199, 295
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	189
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	2 cut(s)	225, 227
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	387
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	9
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
CfoI	GCGC	2 cut(s)	227, 317
Cfr13I	GGNCC	2 cut(s)	74, 420
CseI	GACGC	1 cut(s)	52
CviAII	CATG	3 cut(s)	70, 131, 186
CviJI	RGCY	5 cut(s)	94, 122, 145, 248, 387
CviKI_1	RGCY	5 cut(s)	94, 122, 145, 248, 387
DdeI	CTNAG	1 cut(s)	429
DinI	GGCGCC	1 cut(s)	316
DpnI	GATC	3 cut(s)	44, 201, 297
DpnII	GATC	3 cut(s)	42, 199, 295
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	74, 420
Eco57I	CTGAAG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	344
EgeI	GGCGCC	1 cut(s)	316
EheI	GGCGCC	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	3 cut(s)	73, 134, 189
FaiI	YATR	3 cut(s)	71, 132, 187
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	3 cut(s)	69, 130, 185
FblI	GTMKAC	2 cut(s)	66, 330
GlaI	GCGC	2 cut(s)	226, 316
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	227, 317
Hin1I	GRCGYC	4 cut(s)	30, 63, 315, 327
Hin1II	CATG	3 cut(s)	73, 134, 189
Hin6I	GCGC	2 cut(s)	225, 315
HinP1I	GCGC	2 cut(s)	225, 315
HincII	GTYRAC	3 cut(s)	67, 167, 331
HindII	GTYRAC	3 cut(s)	67, 167, 331
HinfI	GANTC	3 cut(s)	172, 214, 436
HpaII	CCGG	1 cut(s)	318
Hpy166II	GTNNAC	4 cut(s)	67, 167, 277, 331
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	2 cut(s)	19, 440
Hpy8I	GTNNAC	4 cut(s)	67, 167, 277, 331
Hpy99I	CGWCG	5 cut(s)	32, 35, 68, 332, 335
HpyAV	CCTTC	4 cut(s)	348, 385, 400, 406
HpyCH4III	ACNGT	2 cut(s)	238, 424
HpyCH4IV	ACGT	3 cut(s)	30, 51, 327
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	3 cut(s)	30, 51, 327
Hsp92I	GRCGYC	4 cut(s)	30, 63, 315, 327
Hsp92II	CATG	3 cut(s)	73, 134, 189
HspAI	GCGC	2 cut(s)	225, 315
KasI	GGCGCC	1 cut(s)	314
Kzo9I	GATC	3 cut(s)	42, 199, 295
LmnI	GCTCC	3 cut(s)	91, 119, 142
LpnPI	CCDG	7 cut(s)	140, 159, 284, 331, 331, 358, 401
MaeII	ACGT	3 cut(s)	30, 51, 327
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	3 cut(s)	44, 201, 297
MboI	GATC	3 cut(s)	42, 199, 295
MboII	GAAGA	4 cut(s)	59, 119, 269, 410
Mly113I	GGCGCC	1 cut(s)	315
MlyI	GAGTC	3 cut(s)	181, 223, 445
MnlI	CCTC	7 cut(s)	142, 188, 197, 284, 314, 394, 424
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	2 cut(s)	225, 227
NarI	GGCGCC	1 cut(s)	315
NdeII	GATC	3 cut(s)	42, 199, 295
NlaIII	CATG	3 cut(s)	73, 134, 189
NlaIV	GGNNCC	4 cut(s)	75, 144, 316, 343
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	189
PciI	ACATGT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 63, 279
PflFI	GACNNNGTC	1 cut(s)	53
PleI	GAGTC	3 cut(s)	180, 222, 444
PluTI	GGCGCC	1 cut(s)	318
PpsI	GAGTC	3 cut(s)	180, 222, 444
PpuMI	RGGWCCY	1 cut(s)	74
PscI	ACATGT	1 cut(s)	185
PshAI	GACNNNNGTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	4 cut(s)	75, 144, 316, 343
PspPI	GGNCC	2 cut(s)	74, 420
PspPPI	RGGWCCY	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	53
SalI	GTCGAC	2 cut(s)	65, 329
Sau3AI	GATC	3 cut(s)	42, 199, 295
Sau96I	GGNCC	2 cut(s)	74, 420
SchI	GAGTC	3 cut(s)	181, 223, 445
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	7 cut(s)	33, 54, 96, 124, 303, 330, 364
SfcI	CTRYAG	1 cut(s)	237
SfoI	GGCGCC	1 cut(s)	316
SgrDI	CGTCGACG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	74, 420
SsiI	CCGC	4 cut(s)	5, 227, 242, 309
SspDI	GGCGCC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	2 cut(s)	238, 424
TaiI	ACGT	3 cut(s)	33, 54, 330
TaqI	TCGA	8 cut(s)	18, 27, 33, 45, 66, 202, 330, 439
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	86, 119
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	45
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	74, 420
XceI	RCATGY	1 cut(s)	189
XmiI	GTMKAC	2 cut(s)	66, 330
ZraI	GACGTC	2 cut(s)	31, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.