Rh7DG264700

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000888
Physical Location & Seq
Reverse (-)
28166837 .. 28168564
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG264700.1

Sequence Viewer

Length: 1512 bp
ATGAGGCTTATTCGATTATGGATGGCAGAGGGCTTCATTGAAGAAAAACAAGGAAAGACATTGGAAGAGGTTGCAGAGGATTACCTCAATGAACTATTGAATAGGAGCATGATTCAAGCAGCAGAGACAACAGCTGATGGAAGGGTCACAAAATTTCGTATCCATGATCTCTTCCGTGAAATTATCACCTCCAAGACAAGAAGTCAGAACTTTGCCACAATAGCCAAAGAGCAGAATGTAACATTGCCAGAAAAAATCCGTCGCTTGTCAATACATAACACACTGCAATATGTTCAGACAAACAAGTGTGCTTCTCAACTACGTTCTCTTTTTATGTTCACAGTTGCTGAGAAGCCATCACTACAAAGACTATTCCCAGCCGGCTTTGCGCTGCTTAATGTGTTAGATTTGCAAAGTACACCTTTAAATGTTTTCCCAGTTGAAGTTGTGAATCTTTACTTTTTAAAGTATCTGAGCTTGAGAGATACCAGGGTAAAAACCATTCCAAGATTTATAGGGAAGCTTCAGAACCTGGAAACTTTGGATCTTAAGCATTCTCAAGTTACTGAACTCCCAGTTGAAATTCTGAAACTCCAACATCTGCGCTATCTCTTGGTATATCGTTATGAGTTTGTTCCTTACGAAGATTTTCACTCAACATATGGTTTTAAGGTCCTTGCAAAAATAGGAGCTGTGAAATCCCTTCAAAAGCTATGTTTCATTGAGGTGAACCAAGGTGGCAGCGCATTATTGAGAGAGCTGGGGAAACTAGTTCAGTTGAGAAGGTTAGGCATTGTTAAGATGAGGAAAAAAGATGGCAAGGCTCTTTCTTCATCCATTGAAAAGTTGTCCAAACTTTATGCATTGTCCATAACTTCAGTGGAAGAAGACGAGATCATTGATTTGCAGCACCTGTGTTCTCCTCCTCTATTGCTTCAGCATTTGTACTTGCGAGGCAGACTGGAAGCATTACCTCACTGGATACCTTCTCTCCATAGCCTCGTCAAGTTGTATTTGAAATGGAGCAGGTTAAGGGATGATCCACTTGCATTCCTTCAGTATTTGCCCAATCTAGTACATCTTGAGTTGTGTCAGGTTTTTGAAGGAGACACACTGTGTTTTGGAGCCGGCGGATTTAAGAAGCTCAAGCATTTATGCCTCGATAAATCTGATGAACTTCGATGCATAGAGATGGAGGTGGGAACAATGCCTTGTATTGAAAATCTAATCATCCGGCGCTGTAAATCACTGGAGAAAGTCCCATCAGGCATTGAACATCTCATCAAACTAAAGTTGCTTAAGTTTTTTGATATGCCAGAAAAACTAATCAAGACTCTACTTCCACATGAGCATGGCAATGATTATTGGAAAGTTGCGCATGTCCCAGAAGTTTATGTCACCTACTTGAGAGAGTTTGGGTGGGAAGTATTCTCATTAGAGGGCTTGAGTGAGACACAAATCTCTTCTCAACCCAGTTCTGTCACGAAGAGCATTGGAACCGGTTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

503

Amino Acids

58.06

Weight (kDa)

9.03

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 2 - 62 1.8e-21 Disease resistance protein Winged helix domain
LRR_14 PF23598 106 - 434 1.6e-45 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1377
Acc36I ACCTGC 1 cut(s) 1017
AciI CCGC 1 cut(s) 1131
AclWI GGATC 2 cut(s) 552, 1034
AcsI RAATTY 2 cut(s) 152, 582
AcuI CTGAAG 4 cut(s) 509, 861, 920, 1040
AdeI CACNNNGTG 1 cut(s) 1116
AfaI GTAC 3 cut(s) 418, 947, 1077
AflII CTTAAG 2 cut(s) 548, 1298
AgeI ACCGGT 1 cut(s) 1499
AhdI GACNNNNNGTC 1 cut(s) 201
AhlI ACTAGT 1 cut(s) 769
AjnI CCWGG 2 cut(s) 488, 531
AluBI AGCT 7 cut(s) 134, 477, 523, 692, 712, 760, 1144
AluI AGCT 7 cut(s) 134, 477, 523, 692, 712, 760, 1144
Alw26I GTCTC 3 cut(s) 119, 1101, 1445
AlwI GGATC 2 cut(s) 552, 1034
AlwNI CAGNNNCTG 3 cut(s) 347, 532, 913
ApeKI GCWGC 4 cut(s) 119, 391, 741, 907
ApoI RAATTY 2 cut(s) 152, 582
AsiGI ACCGGT 1 cut(s) 1499
Asp700I GAANNNNTTC 1 cut(s) 648
AspLEI GCGC 5 cut(s) 391, 606, 746, 1239, 1378
AspS9I GGNCC 1 cut(s) 673
AsuHPI GGTGA 3 cut(s) 178, 739, 1390
AvaII GGWCC 1 cut(s) 673
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BbsI GAAGAC 1 cut(s) 894
BbvI GCAGC 4 cut(s) 131, 378, 753, 919
BccI CCATC 6 cut(s) 16, 131, 364, 809, 1186, 1270
BciT130I CCWGG 2 cut(s) 490, 533
BciVI GTATCC 2 cut(s) 170, 975
BcoDI GTCTC 3 cut(s) 119, 1101, 1445
BcuI ACTAGT 1 cut(s) 769
BfaI CTAG 2 cut(s) 770, 1073
BfoI RGCGCY 1 cut(s) 1240
BfrI CTTAAG 2 cut(s) 548, 1298
BfuAI ACCTGC 1 cut(s) 1017
BfuI GTATCC 2 cut(s) 170, 975
BisI GCNGC 4 cut(s) 120, 392, 742, 908
BlsI GCNGC 4 cut(s) 121, 393, 743, 909
Bme1390I CCNGG 2 cut(s) 490, 533
Bme18I GGWCC 1 cut(s) 673
BmeRI GACNNNNNGTC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 673
BmiI GGNNCC 2 cut(s) 1126, 1498
BmrFI CCNGG 2 cut(s) 490, 533
BmrI ACTGGG 3 cut(s) 431, 569, 1467
BmsI GCATC 1 cut(s) 1172
BmuI ACTGGG 3 cut(s) 431, 569, 1467
BpiI GAAGAC 1 cut(s) 894
BpmI CTGGAG 1 cut(s) 1271
BpuEI CTTGAG 6 cut(s) 499, 543, 1103, 1130, 1426, 1465
BsaJI CCNNGG 2 cut(s) 489, 733
BsaWI WCCGGW 1 cut(s) 1499
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bse118I RCCGGY 3 cut(s) 380, 1127, 1499
Bse1I ACTGG 6 cut(s) 437, 575, 966, 983, 1254, 1473
Bse3DI GCAATG 2 cut(s) 242, 1363
BseBI CCWGG 2 cut(s) 490, 533
BseDI CCNNGG 2 cut(s) 489, 733
BseGI GGATG 4 cut(s) 27, 833, 1042, 1230
BseMI GCAATG 2 cut(s) 242, 1363
BseMII CTCAG 2 cut(s) 339, 464
BseNI ACTGG 6 cut(s) 437, 575, 966, 983, 1254, 1473
BseRI GAGGAG 2 cut(s) 912, 915
BseXI GCAGC 4 cut(s) 131, 378, 753, 919
BseYI CCCAGC 2 cut(s) 376, 760
BshTI ACCGGT 1 cut(s) 1499
BsiSI CCGG 4 cut(s) 381, 1128, 1234, 1500
BslFI GGGAC 2 cut(s) 1244, 1367
BsmAI GTCTC 3 cut(s) 119, 1101, 1445
BsmFI GGGAC 2 cut(s) 1244, 1367
BsmI GAATGC 2 cut(s) 553, 1049
Bsp143I GATC 4 cut(s) 166, 544, 894, 1039
BspACI CCGC 1 cut(s) 1131
BspCNI CTCAG 2 cut(s) 340, 465
BspLI GGNNCC 2 cut(s) 1126, 1498
BspMI ACCTGC 1 cut(s) 1017
BspPI GGATC 2 cut(s) 552, 1034
BspQI GCTCTTC 1 cut(s) 1481
BspTI CTTAAG 2 cut(s) 548, 1298
BsrDI GCAATG 2 cut(s) 242, 1363
BsrFI RCCGGY 3 cut(s) 380, 1127, 1499
BsrI ACTGG 6 cut(s) 437, 575, 966, 983, 1254, 1473
BssAI RCCGGY 3 cut(s) 380, 1127, 1499
BssECI CCNNGG 2 cut(s) 489, 733
BssMI GATC 4 cut(s) 166, 544, 894, 1039
BssT1I CCWWGG 1 cut(s) 733
Bst2UI CCWGG 2 cut(s) 490, 533
Bst4CI ACNGT 2 cut(s) 343, 1116
Bst6I CTCTTC 4 cut(s) 60, 176, 1468, 1481
BstAFI CTTAAG 2 cut(s) 548, 1298
BstC8I GCNNGC 2 cut(s) 382, 1129
BstDEI CTNAG 2 cut(s) 348, 473
BstF5I GGATG 4 cut(s) 27, 833, 1042, 1230
BstH2I RGCGCY 1 cut(s) 1240
BstHHI GCGC 5 cut(s) 391, 606, 746, 1239, 1378
BstKTI GATC 4 cut(s) 169, 547, 897, 1042
BstMAI GTCTC 3 cut(s) 119, 1101, 1445
BstMBI GATC 4 cut(s) 166, 544, 894, 1039
BstMWI GCNNNNNNNGC 2 cut(s) 221, 386
BstNI CCWGG 2 cut(s) 490, 533
BstNSI RCATGY 1 cut(s) 1382
BstSCI CCNGG 2 cut(s) 488, 531
BstV1I GCAGC 4 cut(s) 131, 378, 753, 919
BstV2I GAAGAC 1 cut(s) 894
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BsuI GTATCC 2 cut(s) 170, 975
BtsCI GGATG 4 cut(s) 27, 833, 1042, 1230
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 5 cut(s) 281, 885, 976, 1112, 1247
BveI ACCTGC 1 cut(s) 1017
Cac8I GCNNGC 2 cut(s) 382, 1129
CaiI CAGNNNCTG 3 cut(s) 347, 532, 913
CfoI GCGC 5 cut(s) 391, 606, 746, 1239, 1378
Cfr10I RCCGGY 3 cut(s) 380, 1127, 1499
Cfr13I GGNCC 1 cut(s) 673
Csp6I GTAC 3 cut(s) 417, 946, 1076
CspAI ACCGGT 1 cut(s) 1499
CviAII CATG 5 cut(s) 109, 164, 1346, 1352, 1379
CviQI GTAC 3 cut(s) 417, 946, 1076
DdeI CTNAG 2 cut(s) 348, 473
DpnI GATC 4 cut(s) 168, 546, 896, 1041
DpnII GATC 4 cut(s) 166, 544, 894, 1039
DraI TTTAAA 2 cut(s) 426, 465
DraIII CACNNNGTG 1 cut(s) 1116
DriI GACNNNNNGTC 1 cut(s) 201
Eam1104I CTCTTC 4 cut(s) 60, 176, 1468, 1481
Eam1105I GACNNNNNGTC 1 cut(s) 201
EarI CTCTTC 4 cut(s) 60, 176, 1468, 1481
EciI GGCGGA 1 cut(s) 1146
Eco130I CCWWGG 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 673
Eco57I CTGAAG 4 cut(s) 509, 861, 920, 1040
EcoO109I RGGNCCY 1 cut(s) 673
EcoRII CCWGG 2 cut(s) 488, 531
EcoT14I CCWWGG 1 cut(s) 733
EcoT22I ATGCAT 2 cut(s) 865, 1187
ErhI CCWWGG 1 cut(s) 733
FaeI CATG 5 cut(s) 112, 167, 1349, 1355, 1382
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 2 cut(s) 1244, 1367
FatI CATG 5 cut(s) 108, 163, 1345, 1351, 1378
FauNDI CATATG 1 cut(s) 661
Fnu4HI GCNGC 4 cut(s) 120, 392, 742, 908
FokI GGATG 4 cut(s) 34, 820, 1049, 1217
Fsp4HI GCNGC 4 cut(s) 120, 392, 742, 908
FspBI CTAG 2 cut(s) 770, 1073
FspI TGCGCA 1 cut(s) 1377
GlaI GCGC 5 cut(s) 390, 605, 745, 1238, 1377
GluI GCNGC 4 cut(s) 120, 392, 742, 908
GsaI CCCAGC 2 cut(s) 380, 764
GsuI CTGGAG 1 cut(s) 1271
HaeII RGCGCY 1 cut(s) 1240
HapII CCGG 4 cut(s) 381, 1128, 1234, 1500
HhaI GCGC 5 cut(s) 391, 606, 746, 1239, 1378
Hin1II CATG 5 cut(s) 112, 167, 1349, 1355, 1382
Hin6I GCGC 5 cut(s) 389, 604, 744, 1237, 1376
HinP1I GCGC 5 cut(s) 389, 604, 744, 1237, 1376
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 3 cut(s) 112, 451, 1333
HpaII CCGG 4 cut(s) 381, 1128, 1234, 1500
HphI GGTGA 3 cut(s) 178, 739, 1390
Hpy166II GTNNAC 3 cut(s) 339, 419, 730
Hpy188I TCNGA 6 cut(s) 207, 297, 474, 528, 588, 1171
Hpy188III TCNNGA 3 cut(s) 1082, 1330, 1483
Hpy8I GTNNAC 3 cut(s) 339, 419, 730
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 6 cut(s) 135, 713, 777, 996, 1064, 1097
HpyCH4III ACNGT 2 cut(s) 343, 1116
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 8 cut(s) 74, 286, 412, 680, 863, 907, 1049, 1185
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 386
HpyF3I CTNAG 2 cut(s) 348, 473
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 5 cut(s) 112, 167, 1349, 1355, 1382
HspAI GCGC 5 cut(s) 389, 604, 744, 1237, 1376
KroI GCCGGC 2 cut(s) 380, 1127
KroNI GCCGGC 2 cut(s) 382, 1129
Kzo9I GATC 4 cut(s) 166, 544, 894, 1039
LguI GCTCTTC 1 cut(s) 1481
LmnI GCTCC 4 cut(s) 105, 689, 1023, 1124
Lsp1109I GCAGC 4 cut(s) 131, 378, 753, 919
LweI GCATC 1 cut(s) 1172
MaeI CTAG 2 cut(s) 770, 1073
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 5 cut(s) 145, 238, 562, 1396, 1480
MalI GATC 4 cut(s) 168, 546, 896, 1041
MboI GATC 4 cut(s) 166, 544, 894, 1039
MboII GAAGA 9 cut(s) 53, 77, 163, 656, 822, 896, 899, 1455, 1498
MflI RGATCY 1 cut(s) 544
MluCI AATT 3 cut(s) 152, 180, 582
MlyI GAGTC 1 cut(s) 1327
MmeI TCCRAC 2 cut(s) 619, 1484
Mph1103I ATGCAT 2 cut(s) 865, 1187
MroNI GCCGGC 2 cut(s) 380, 1127
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 9 cut(s) 396, 425, 464, 549, 669, 798, 1031, 1137, 1299
MslI CAYNNNNRTG 4 cut(s) 725, 1190, 1350, 1356
MspA1I CMGCKG 1 cut(s) 134
MspCI CTTAAG 2 cut(s) 548, 1298
MspI CCGG 4 cut(s) 381, 1128, 1234, 1500
MspR9I CCNGG 2 cut(s) 490, 533
Mva1269I GAATGC 2 cut(s) 553, 1049
MvaI CCWGG 2 cut(s) 490, 533
MwoI GCNNNNNNNGC 2 cut(s) 221, 386
NaeI GCCGGC 2 cut(s) 382, 1129
NdeI CATATG 1 cut(s) 661
NdeII GATC 4 cut(s) 166, 544, 894, 1039
NgoMIV GCCGGC 2 cut(s) 380, 1127
NlaIII CATG 5 cut(s) 112, 167, 1349, 1355, 1382
NlaIV GGNNCC 2 cut(s) 1126, 1498
NmuCI GTSAC 3 cut(s) 145, 1396, 1480
NsbI TGCGCA 1 cut(s) 1377
NsiI ATGCAT 2 cut(s) 865, 1187
NspI RCATGY 1 cut(s) 1382
PciSI GCTCTTC 1 cut(s) 1481
PctI GAATGC 2 cut(s) 553, 1049
PdiI GCCGGC 2 cut(s) 382, 1129
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 2 cut(s) 112, 451
PinAI ACCGGT 1 cut(s) 1499
PkrI GCNGC 4 cut(s) 121, 393, 743, 909
PleI GAGTC 1 cut(s) 1327
PpsI GAGTC 1 cut(s) 1327
PpuMI RGGWCCY 1 cut(s) 673
Psp5II RGGWCCY 1 cut(s) 673
Psp6I CCWGG 2 cut(s) 488, 531
PspFI CCCAGC 2 cut(s) 376, 760
PspGI CCWGG 2 cut(s) 488, 531
PspN4I GGNNCC 2 cut(s) 1126, 1498
PspPI GGNCC 1 cut(s) 673
PspPPI RGGWCCY 1 cut(s) 673
PstNI CAGNNNCTG 3 cut(s) 347, 532, 913
PsuI RGATCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 3 cut(s) 418, 947, 1077
RsaNI GTAC 3 cut(s) 417, 946, 1076
RseI CAYNNNNRTG 4 cut(s) 725, 1190, 1350, 1356
SapI GCTCTTC 1 cut(s) 1481
SaqAI TTAA 9 cut(s) 396, 425, 464, 549, 669, 798, 1031, 1137, 1299
SatI GCNGC 4 cut(s) 120, 392, 742, 908
Sau3AI GATC 4 cut(s) 166, 544, 894, 1039
Sau96I GGNCC 1 cut(s) 673
SchI GAGTC 1 cut(s) 1327
ScrFI CCNGG 2 cut(s) 490, 533
SfaNI GCATC 1 cut(s) 1172
SinI GGWCC 1 cut(s) 673
SmiMI CAYNNNNRTG 4 cut(s) 725, 1190, 1350, 1356
SmlI CTYRAG 8 cut(s) 478, 548, 558, 1082, 1145, 1298, 1405, 1444
SmoI CTYRAG 8 cut(s) 478, 548, 558, 1082, 1145, 1298, 1405, 1444
SpeI ACTAGT 1 cut(s) 769
Sse9I AATT 3 cut(s) 152, 180, 582
SsiI CCGC 1 cut(s) 1131
SspMI CTAG 2 cut(s) 770, 1073
StyD4I CCNGG 2 cut(s) 488, 531
StyI CCWWGG 1 cut(s) 733
TaaI ACNGT 2 cut(s) 343, 1116
TaiI ACGT 1 cut(s) 325
TaqI TCGA 3 cut(s) 13, 1161, 1180
TasI AATT 3 cut(s) 152, 180, 582
TatI WGTACW 3 cut(s) 416, 945, 1075
TfiI GAWTC 2 cut(s) 112, 451
Tru1I TTAA 9 cut(s) 396, 425, 464, 549, 669, 798, 1031, 1137, 1299
Tru9I TTAA 9 cut(s) 396, 425, 464, 549, 669, 798, 1031, 1137, 1299
TscAI CASTG 5 cut(s) 288, 885, 983, 1119, 1254
TseFI GTSAC 3 cut(s) 145, 1396, 1480
TseI GCWGC 4 cut(s) 119, 391, 741, 907
Tsp45I GTSAC 3 cut(s) 145, 1396, 1480
TspDTI ATGAA 5 cut(s) 25, 105, 709, 822, 1188
TspGWI ACGGA 2 cut(s) 164, 248
TspRI CASTG 5 cut(s) 288, 885, 983, 1119, 1254
Vha464I CTTAAG 2 cut(s) 548, 1298
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 2 cut(s) 152, 582
XceI RCATGY 1 cut(s) 1382
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 2 cut(s) 770, 1073
Zsp2I ATGCAT 2 cut(s) 865, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.