Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000888

Physical Location & Seq

Genomic Coordinates Reverse (-)

10507965 .. 10510506

Gene Structure 2542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0134000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGATTACTTCCTTTACCCTCTTCTCCTCCTCCCACACCTTCTTTGTAGCCCTCGCTTTCACTCTCCTCTGCCTCTTCCTCTTCCTCGCCGTCCTCACCGTCCGATCACGCCCCTCGAAACCCAGGCGCTCCCAATCGGACGGCGGTTCCTCCGACGACGACGACAAAAACGAGAAGCTCTGCAATTGCTTCTGTCACTCTAACGGCGCCCTTTCCGATTACTCGGAACCCGTGGACGCGTCGCACTTGAACGGCGGGACGGAGAAGCAGACGGCCGTTACGGAGATAGAGACGACGGGCGCGTCGATGATGGAGCAGTTGGTTCCGGAGATTACCACCCACGCGCTCAGCTACCTGGACTATCCGAGCCTCTGTAGGCTTTCGATGACCAATTCGCTGATGCGTAAGGCCGCCAATGACGATAATGCTTGGAAAGCTCTGTACCATAAGGACTTTACATCAGAACAGGATACTGTAACTCCAGTTAATGGTTGGAAGGCTTACTATGCTGCTACGAGAGCAGTTGTGATGGTCAATGTTCAATTCTTCAACTTCATCAGAGATAGGTCACTTCCTGAAATGAGTCGTTTATGGCTGAATGCAGATTATGTGAAGTGTGTTCATCCCTCAGGAGAATTCTTTTCAGGGTATAGTGCTGTAGTACAGAGTTGGCAACTCGCCTTTAATTGGGAGCAAGGAGTTAACTTTCAGGTTCGGGATGTGCGTGCTCGTGTTCTGACTGACATGGCTTGGGTCACCATGAAAACCTATGTTGGTGATCACCTGGATACCGGTCCATTCAGTGTGACTAACATCTTTGAGTTCCATAATGGGCGGTGGTCCATGGTGCATCATCACAGCTCTGTGTTGGATGAGGTAGAACACCAGAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

299

Amino Acids

33.85

Weight (kDa)

5.59

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	110 - 150	6.6e-06	F-box-like
SnoaL_3	PF13474	178 - 292	3.8e-27	SnoaL-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22710 FvH4_5g23390 FvH4_5g23400 FvH4_5g23400 FvH4_5g23420
malus_domestica	MD06G1024500.v1.1 MD09G1164200.v1.1 MD09G1164500.v1.1 MD17G1163600.v1.1
prunus_persica	Prupe.5G025400_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025600_v2.0.a1
pyrus_communis	pycom06g01980 pycom09g08130 pycom17g15640
rosa_chinensis	RchiOBHm_Chr7g0211261 RchiOBHm_Chr7g0212451 RchiOBHm_Chr7g0212471 RchiOBHm_Chr7g0212481
rosa_laevigata	RLG00000018806
rosa_multiflora	Rmu_sc0005478.1_g000003 Rmu_sc0007576.1_g000003 Rmu_sc0007576.1_g000004 Rmu_sc0007576.1_g000011 Rmu_sc0007576.1_g000012 Rmu_sc0038076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246770 Rroxscaffold_3G00246780 Rroxscaffold_3G00246790 Rroxscaffold_3G00246810 Rroxscaffold_3G00247970
rosa_rugosa	Rorug02G0251500 Rorug07G0124700 Rorug07G0134000 Rorug07G0134100 Rorug07G0134200 Rorug07G0134300 Rorug07G0134400 Rorug07G0134500 Rorug07G0134500 Rorug07G0134700
rosa_samantha	Rh2AG309900 Rh2AG385400 Rh2BG318600 Rh2CG296800 Rh2CG301800 Rh7BG251100 Rh7BG260900 Rh7BG261000 Rh7CG273800 Rh7CG283800 Rh7CG283900 Rh7CG284100 Rh7DG264700 Rh7DG264800 Rh7DG273700 Rh7DG273800 Rh7DG273900
rosa_wichuraiana	Rw2G025080 Rw7G021970 Rw7G022810 Rw7G022820 Rw7G022840 Rw7G022850 Rw7G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AccB1I	GGYRCC	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	491
AccII	CGCG	3 cut(s)	242, 305, 347
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	4 cut(s)	147, 258, 414, 838
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	638
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	2 cut(s)	446, 666
AfiI	CCNNNNNNNGG	2 cut(s)	491, 690
AflIII	ACRYGT	1 cut(s)	240
AgeI	ACCGGT	1 cut(s)	794
AgsI	TTSAA	3 cut(s)	253, 545, 553
AjnI	CCWGG	3 cut(s)	125, 357, 786
AluBI	AGCT	4 cut(s)	181, 354, 440, 864
AluI	AGCT	4 cut(s)	181, 354, 440, 864
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	2 cut(s)	276, 411
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	638
AsiGI	ACCGGT	1 cut(s)	794
AspLEI	GCGC	4 cut(s)	132, 212, 305, 349
AspS9I	GGNCC	2 cut(s)	797, 843
AsuHPI	GGTGA	4 cut(s)	91, 751, 776, 791
AvaII	GGWCC	2 cut(s)	797, 843
AxyI	CCTNAGG	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	209
BauI	CACGAG	1 cut(s)	732
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	2 cut(s)	307, 526
BceAI	ACGGC	6 cut(s)	77, 160, 223, 263, 271, 291
BciT130I	CCWGG	3 cut(s)	127, 359, 788
BciVI	GTATCC	2 cut(s)	466, 784
BclI	TGATCA	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	376, 660
BfoI	RGCGCY	2 cut(s)	133, 213
BfuI	GTATCC	2 cut(s)	466, 784
BisI	GCNGC	2 cut(s)	414, 513
BlpI	GCTNAGC	1 cut(s)	350
BlsI	GCNGC	2 cut(s)	415, 514
Bme1390I	CCNGG	3 cut(s)	127, 359, 788
Bme18I	GGWCC	2 cut(s)	797, 843
BmgT120I	GGNCC	2 cut(s)	797, 843
BmiI	GGNNCC	4 cut(s)	151, 211, 231, 327
BmrFI	CCNGG	3 cut(s)	127, 359, 788
BmsI	GCATC	2 cut(s)	393, 862
BpmI	CTGGAG	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	125, 234, 846
BsaWI	WCCGGW	2 cut(s)	328, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 690
Bse118I	RCCGGY	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	485
Bse21I	CCTNAGG	1 cut(s)	631
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	3 cut(s)	127, 359, 788
BseDI	CCNNGG	3 cut(s)	125, 234, 846
BseGI	GGATG	3 cut(s)	625, 727, 880
BseLI	CCNNNNNNNGG	2 cut(s)	491, 690
BseMII	CTCAG	2 cut(s)	364, 645
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	3 cut(s)	19, 22, 59
BseX3I	CGGCCG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	499
Bsh1236I	CGCG	3 cut(s)	242, 305, 347
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	278, 413
BshNI	GGYRCC	1 cut(s)	209
BshTI	ACCGGT	1 cut(s)	794
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	2 cut(s)	329, 795
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	2 cut(s)	491, 690
BsmAI	GTCTC	1 cut(s)	287
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	274
BsmI	GAATGC	2 cut(s)	607, 898
BsnI	GGCC	2 cut(s)	278, 413
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	107, 781
Bsp1720I	GCTNAGC	1 cut(s)	350
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	4 cut(s)	147, 258, 414, 838
BspANI	GGCC	2 cut(s)	278, 413
BspCNI	CTCAG	2 cut(s)	363, 644
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	3 cut(s)	242, 305, 347
BspLI	GGNNCC	4 cut(s)	151, 211, 231, 327
BspT107I	GGYRCC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	794
BsrI	ACTGG	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	794
BssECI	CCNNGG	3 cut(s)	125, 234, 846
BssMI	GATC	2 cut(s)	107, 781
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	846
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	3 cut(s)	127, 359, 788
Bst4CI	ACNGT	2 cut(s)	103, 478
Bst6I	CTCTTC	3 cut(s)	29, 83, 89
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	2 cut(s)	350, 631
BstDSI	CCRYGG	2 cut(s)	234, 846
BstEII	GGTNACC	1 cut(s)	757
BstF5I	GGATG	3 cut(s)	625, 727, 880
BstFNI	CGCG	3 cut(s)	242, 305, 347
BstH2I	RGCGCY	2 cut(s)	133, 213
BstHHI	GCGC	4 cut(s)	132, 212, 305, 349
BstKTI	GATC	2 cut(s)	110, 784
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	107, 781
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 509, 521
BstNI	CCWGG	3 cut(s)	127, 359, 788
BstPI	GGTNACC	1 cut(s)	757
BstSCI	CCNGG	3 cut(s)	125, 357, 786
BstSFI	CTRYAG	2 cut(s)	376, 660
BstUI	CGCG	3 cut(s)	242, 305, 347
BstV1I	GCAGC	1 cut(s)	499
BstZI	CGGCCG	1 cut(s)	276
Bsu36I	CCTNAGG	1 cut(s)	631
BsuI	GTATCC	2 cut(s)	466, 784
BsuRI	GGCC	2 cut(s)	278, 413
BtgI	CCRYGG	2 cut(s)	234, 846
BtsCI	GGATG	3 cut(s)	625, 727, 880
BtsIMutI	CAGTG	1 cut(s)	811
Cac8I	GCNNGC	1 cut(s)	729
CfoI	GCGC	4 cut(s)	132, 212, 305, 349
Cfr10I	RCCGGY	1 cut(s)	794
Cfr13I	GGNCC	2 cut(s)	797, 843
CseI	GACGC	3 cut(s)	231, 248, 294
Csp6I	GTAC	2 cut(s)	445, 665
CspAI	ACCGGT	1 cut(s)	794
CviAII	CATG	3 cut(s)	748, 763, 847
CviQI	GTAC	2 cut(s)	445, 665
DdeI	CTNAG	2 cut(s)	350, 631
DinI	GGCGCC	1 cut(s)	211
DpnI	GATC	2 cut(s)	109, 783
DpnII	GATC	2 cut(s)	107, 781
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	276
EagI	CGGCCG	1 cut(s)	276
Eam1104I	CTCTTC	3 cut(s)	29, 83, 89
EarI	CTCTTC	3 cut(s)	29, 83, 89
EclXI	CGGCCG	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	846
Eco47I	GGWCC	2 cut(s)	797, 843
Eco52I	CGGCCG	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	631
Eco91I	GGTNACC	1 cut(s)	757
EcoO65I	GGTNACC	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	3 cut(s)	125, 357, 786
EcoT14I	CCWWGG	1 cut(s)	846
EcoT22I	ATGCAT	1 cut(s)	898
EgeI	GGCGCC	1 cut(s)	211
EheI	GGCGCC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	846
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	751, 766, 850
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	3 cut(s)	747, 762, 846
FauI	CCCGC	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	2 cut(s)	414, 513
FokI	GGATG	3 cut(s)	612, 734, 887
Fsp4HI	GCNGC	2 cut(s)	414, 513
GlaI	GCGC	4 cut(s)	131, 211, 304, 348
GluI	GCNGC	2 cut(s)	414, 513
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	2 cut(s)	133, 213
HaeIII	GGCC	2 cut(s)	278, 413
HapII	CCGG	2 cut(s)	329, 795
HgaI	GACGC	3 cut(s)	231, 248, 294
HhaI	GCGC	4 cut(s)	132, 212, 305, 349
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	751, 766, 850
Hin6I	GCGC	4 cut(s)	130, 210, 303, 347
HinP1I	GCGC	4 cut(s)	130, 210, 303, 347
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	1 cut(s)	586
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	2 cut(s)	329, 795
HphI	GGTGA	4 cut(s)	91, 751, 776, 791
Hpy166II	GTNNAC	2 cut(s)	238, 706
Hpy188I	TCNGA	9 cut(s)	107, 142, 157, 220, 229, 369, 466, 563, 741
Hpy188III	TCNNGA	4 cut(s)	329, 578, 633, 719
Hpy8I	GTNNAC	2 cut(s)	238, 706
Hpy99I	CGWCG	6 cut(s)	161, 164, 167, 247, 301, 310
HpyAV	CCTTC	2 cut(s)	52, 493
HpyCH4III	ACNGT	2 cut(s)	103, 478
HpyCH4V	TGCA	4 cut(s)	186, 605, 853, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 509, 521
HpyF3I	CTNAG	2 cut(s)	350, 631
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	751, 766, 850
HspAI	GCGC	4 cut(s)	130, 210, 303, 347
KasI	GGCGCC	1 cut(s)	209
Kpn2I	TCCGGA	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	781
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	2 cut(s)	107, 781
LmnI	GCTCC	3 cut(s)	137, 316, 694
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	393, 862
MaeIII	GTNAC	6 cut(s)	197, 280, 478, 570, 757, 808
MalI	GATC	2 cut(s)	109, 783
MboI	GATC	2 cut(s)	107, 781
MboII	GAAGA	4 cut(s)	16, 70, 76, 541
MfeI	CAATTG	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	5 cut(s)	187, 394, 545, 638, 688
MluI	ACGCGT	1 cut(s)	240
Mly113I	GGCGCC	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	3 cut(s)	180, 476, 852
Mph1103I	ATGCAT	1 cut(s)	898
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	3 cut(s)	489, 687, 705
MslI	CAYNNNNRTG	1 cut(s)	891
MspI	CCGG	2 cut(s)	329, 795
MspR9I	CCNGG	3 cut(s)	127, 359, 788
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	2 cut(s)	607, 898
MvaI	CCWGG	3 cut(s)	127, 359, 788
MvnI	CGCG	3 cut(s)	242, 305, 347
MwoI	GCNNNNNNNGC	3 cut(s)	437, 509, 521
NarI	GGCGCC	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	2 cut(s)	107, 781
NlaIII	CATG	3 cut(s)	751, 766, 850
NlaIV	GGNNCC	4 cut(s)	151, 211, 231, 327
NmuCI	GTSAC	4 cut(s)	197, 570, 757, 808
NsiI	ATGCAT	1 cut(s)	898
PcsI	WCGNNNNNNNCGW	4 cut(s)	171, 302, 305, 724
PctI	GAATGC	2 cut(s)	607, 898
PflMI	CCANNNNNTGG	1 cut(s)	491
PinAI	ACCGGT	1 cut(s)	794
PkrI	GCNGC	2 cut(s)	415, 514
PleI	GAGTC	1 cut(s)	594
PluTI	GGCGCC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	594
Psp6I	CCWGG	3 cut(s)	125, 357, 786
PspEI	GGTNACC	1 cut(s)	757
PspGI	CCWGG	3 cut(s)	125, 357, 786
PspN4I	GGNNCC	4 cut(s)	151, 211, 231, 327
PspPI	GGNCC	2 cut(s)	797, 843
RsaI	GTAC	2 cut(s)	446, 666
RsaNI	GTAC	2 cut(s)	445, 665
RseI	CAYNNNNRTG	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	489, 687, 705
SatI	GCNGC	2 cut(s)	414, 513
Sau3AI	GATC	2 cut(s)	107, 781
Sau96I	GGNCC	2 cut(s)	797, 843
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	3 cut(s)	127, 359, 788
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	393, 862
SfcI	CTRYAG	2 cut(s)	376, 660
SfoI	GGCGCC	1 cut(s)	211
SinI	GGWCC	2 cut(s)	797, 843
SmiMI	CAYNNNNRTG	1 cut(s)	891
Sse9I	AATT	5 cut(s)	187, 394, 545, 638, 688
SsiI	CCGC	4 cut(s)	147, 258, 414, 838
SspDI	GGCGCC	1 cut(s)	209
StyD4I	CCNGG	3 cut(s)	125, 357, 786
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	2 cut(s)	103, 478
TaqI	TCGA	3 cut(s)	119, 308, 386
TasI	AATT	5 cut(s)	187, 394, 545, 638, 688
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	489, 687, 705
Tru9I	TTAA	3 cut(s)	489, 687, 705
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	4 cut(s)	197, 570, 757, 808
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	4 cut(s)	197, 570, 757, 808
TspDTI	ATGAA	3 cut(s)	547, 614, 779
TspGWI	ACGGA	2 cut(s)	278, 299
TspRI	CASTG	1 cut(s)	811
Van91I	CCANNNNNTGG	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	797, 843
XapI	RAATTY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.