Rroxscaffold_3G00246810

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
40107769 .. 40110630
2862 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00246810.1

Sequence Viewer

Length: 2367 bp
ATGGCAGAGACTTCAGTTAATTTTCTTCTGGAGAAACTTGGAACCATTTTTGAAAATGAGGTACACGTGTTGGGAGTATTGTTGGGCGGGGTTCAAGAAGAAGCAATCAATCTTCAAGGAGAGTTTGAAAGAATGAGGGCCTTCCTGAGGACTGCAGATGCATTGCAGGAAACCGATCAGGAAGTCAAAGTTTGGGTTAAGCAAGTCAGAGATATTGCTCATGAAGCTGAAGATATTCTGGATGAATTTACTTTGCTCCACGAACATGATCATGGGGATGGAATCTGTGGTTCTCTGAGCAGATTGAGTTGCTGTATCAAGAATGCAAAAGCCTGTTATCGTATTGCTTTCCAGTTAAAAGCCATCAACTCAAGAGTCAAAAGTATTTCAGAGGTTCATAAGAGACTCCAACACAAATTCATCAAAGCCGAAGAAGGTCTGGGTTTTGACAGTGTGGGAAATACATGGCAAGACCGTCGAGGAGATACCCTTCTTCTAGACAAATCTGATGTTGTGGGCATTCATGAGCCTAAAAATCAGCTGGTGAGGTGGCTGTTTAAAGACACTTCTGGGCGCAAAGTGGTTTCCTTGGCTGGAATGGGAGGAATAGGTAAGACCACCTTGGCAAAGCAAGTATATGATGATCCAGAAGTGGTAAAACATTTTGAAGTGCGTGCATGGGTCACTGTCAATCGATCCATCAAATCTGGAGACCTTCTCAAAGACATGGTTCAACAACTCTTCAAAGCAATCAGGAGACGAGTTCCAGAAGTAGTCGCAAACATGGACAACAATCAACTGAAGGTAACAATCAAGGAGCTGCTACAGAAAAGGAGGTACCTGATTGTCTTGGATGATGTCTGGCACCTTTACGAATGGGATAGTATTCAACATGCACTGCCTAACAACAGTTGTGGCAGCCGAGTTATTCTCACTACAAGAAATGCAGAAGTAGCCTCTACTACTCGCATACTCTCCAATGGTAAGACCTTTGATTTAAAGCCCATACCTCCTACAGAGTCTTGGGATCTCTTTTGCAGAAAGGTGTTTCAACTGAACAAATGCCCTCCTCATTTGGAGGATATTTGTAAGGACATTTTAAATAAGTGTGAGGGGCTTCCCCTTGCGATTGTCACAATTAGTAGTGTTTTGGCTACAAAAGATGAAAGACGAATGGACGAGTGGGATATGGTTGCCCGTAGACTTGGGGCTGAAATTGAGGGTAATGACAAGCTCAATTATTTTAAGAAGGTTCTTTTACTCAGCTTTAATGATTTGCCATACTTCCTGAAATCCTGCTTCTTGTACCTGAGCATATTTCCCGAGGGTCATCTGATTGAACGTACGAGGCTGATCCGATTATGGGTAGCAGAGGGATTAATTGAAGCAAAAGTGGGGAGAACACCCGAAGAAGTGGCAGATGACTATCTCCATGTACTCTTGAACAGAAGCCTAATGCAAGTGGCCACAACTACTCCTGATGGAAGGGTCAAAACATGTCGGATCCATGAGTTTTTTCGGGAGATCATTATGTCCAAGTCAAGAGATCAGAACTTCACCACAGTTGTGAAAGAAAAGAGTGTGCCTGCGCAATGGTCTGACAAAATCCGCCGCCTATCAATGCATAACTCAATGCAATATGTACAGACAAACAGGTGTGTTTCTCAACTTCGTTCTCTATTTATGTTCAGAGTTGTCGAGAAGCCATTACTACAAAGGTATTTTCCTGGAGGGTTCAGACTTCTCAATGTCTTAGAATTGCAAAATGCGCCTCTAAAAGTTTTCCCAGTTGAAGTTATCAACCTTTTCTTTTTGAAGTATCTGAGTTTAAAAGGTACCAAGGTGAAAACCGTTCCTAGGTTCATTGGGAAGCTTCAAAACCTGGAGACCTTGGATCTTAAACATTCTCTGGTTACTGAACTCCCAGTTGAAATCTTGAAGCTCAAACATCTACGTCATCTCCTGGTATATCGTTACGAATCTGAACATTATGGAGATTTTCACTCAAAACATGGTTTCAAGGTACTTGCAAAAATTGGGGTTTTGACGTCCCTTCAAAAGCTCTGTTTCATCAAGGCAAATGAAGATGGTGGTGCCATTTTAAGAGAGCTCAGGAACCTAGTTCAGTTACGAAGGTTAGGAATTGTACAGATGAGGAAAGAAGATGGAAAAATTCTTTGTTCATCGATTGAAAAGCTGAACAAACTTTGCGCTATGTCCATAACTGCAGAAGAAGAGGACGAGATCATTGATTTGCAGCATCTTTCTTCTCCCCTCTACTGCTTCAGCGCCTTTACTTGCGAGGAAGGTTGGAGACAATACCTCACTGGATTCCTTCTCTGCATAGCCTCGTCAGATTATATTTGA

Protein Analysis

788

Amino Acids

90.56

Weight (kDa)

8.72

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 91 3.3e-23 Rx N-terminal domain
NB-ARC PF00931 176 - 353 5.2e-43 NB-ARC domain
WHD_DRP PF23559 439 - 510 1.5e-20 Disease resistance protein Winged helix domain
LRR_14 PF23598 556 - 749 6e-27 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 2051
Acc16I TGCGCA 1 cut(s) 1590
Acc65I GGTACC 2 cut(s) 837, 1835
AccB1I GGYRCC 4 cut(s) 837, 864, 1835, 2093
AccI GTMKAC 1 cut(s) 1201
AciI CCGC 3 cut(s) 87, 1609, 1612
AclWI GGATC 7 cut(s) 638, 690, 1035, 1348, 1498, 1511, 1902
AcoI YGGCCR 1 cut(s) 1464
AcsI RAATTY 3 cut(s) 245, 416, 2172
AcuI CTGAAG 3 cut(s) 249, 821, 2269
AcvI CACGTG 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 2048
AfaI GTAC 9 cut(s) 63, 839, 1307, 1345, 1437, 1644, 1837, 2025, 2148
AfiI CCNNNNNNNGG 3 cut(s) 147, 1363, 1857
AflIII ACRYGT 3 cut(s) 64, 66, 1496
AjnI CCWGG 3 cut(s) 1726, 1881, 1962
AleI CACNNNNGTG 1 cut(s) 1565
Alw21I GWGCWC 1 cut(s) 2112
Alw26I GTCTC 6 cut(s) 2, 397, 705, 751, 1880, 2308
AlwI GGATC 7 cut(s) 638, 690, 1035, 1348, 1498, 1511, 1902
Ama87I CYCGRG 1 cut(s) 1322
AoxI GGCC 2 cut(s) 138, 1464
ApeKI GCWGC 3 cut(s) 820, 918, 2257
ApoI RAATTY 3 cut(s) 245, 416, 2172
AseI ATTAAT 1 cut(s) 1379
Asp700I GAANNNNTTC 1 cut(s) 234
Asp718I GGTACC 2 cut(s) 837, 1835
AspA2I CCTAGG 1 cut(s) 1856
AspLEI GCGC 5 cut(s) 576, 1591, 1771, 2213, 2291
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 556, 1549, 1855
AvaI CYCGRG 1 cut(s) 1322
AvrII CCTAGG 1 cut(s) 1856
AxyI CCTNAGG 1 cut(s) 146
BaeI ACNNNNGTAYC 4 cut(s) 53, 86, 1827, 1860
BalI TGGCCA 1 cut(s) 1466
BamHI GGATCC 1 cut(s) 1503
BanI GGYRCC 4 cut(s) 837, 864, 1835, 2093
BanII GRGCYC 1 cut(s) 2112
BbrPI CACGTG 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 2112
BbvI GCAGC 3 cut(s) 807, 930, 2269
BccI CCATC 6 cut(s) 272, 371, 707, 1475, 2081, 2159
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 3 cut(s) 1728, 1883, 1964
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 6 cut(s) 2, 397, 705, 751, 1880, 2308
BfaI CTAG 3 cut(s) 497, 1857, 2120
BfmI CTRYAG 4 cut(s) 153, 824, 1014, 2226
BfoI RGCGCY 1 cut(s) 2292
BisI GCNGC 4 cut(s) 821, 919, 1612, 2258
BlnI CCTAGG 1 cut(s) 1856
BlsI GCNGC 4 cut(s) 822, 920, 1613, 2259
Bme1390I CCNGG 3 cut(s) 1728, 1883, 1964
BmeT110I CYCGRG 1 cut(s) 1322
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 7 cut(s) 43, 839, 866, 1505, 1837, 2095, 2117
BmrFI CCNGG 3 cut(s) 1728, 1883, 1964
BmrI ACTGGG 2 cut(s) 1781, 1919
BmsI GCATC 2 cut(s) 148, 2269
BmuI ACTGGG 2 cut(s) 1781, 1919
BplI GAGNNNNNCTC 4 cut(s) 702, 734, 915, 947
BpmI CTGGAG 4 cut(s) 50, 729, 1749, 1904
Bpu10I CCTNAGC 2 cut(s) 1310, 2111
BpuEI CTTGAG 1 cut(s) 355
Bsa29I ATCGAT 2 cut(s) 694, 2186
BsaAI YACGTR 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 1425
BsaHI GRCGYC 1 cut(s) 2048
BsaI GGTCTC 2 cut(s) 705, 1880
BsaJI CCNNGG 6 cut(s) 588, 621, 1323, 1839, 1856, 1890
BsaXI ACNNNNNCTCC 4 cut(s) 1459, 1489, 1944, 1974
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 1363, 1857
Bse1I ACTGG 4 cut(s) 352, 1787, 1925, 2332
Bse21I CCTNAGG 1 cut(s) 146
Bse3DI GCAATG 2 cut(s) 161, 1598
Bse8I GATNNNNATC 1 cut(s) 1425
BseBI CCWGG 3 cut(s) 1728, 1883, 1964
BseCI ATCGAT 2 cut(s) 694, 2186
BseDI CCNNGG 6 cut(s) 588, 621, 1323, 1839, 1856, 1890
BseGI GGATG 3 cut(s) 247, 283, 859
BseJI GATNNNNATC 1 cut(s) 1425
BseLI CCNNNNNNNGG 3 cut(s) 147, 1363, 1857
BseMI GCAATG 2 cut(s) 161, 1598
BseMII CTCAG 6 cut(s) 137, 287, 1276, 1301, 1814, 2125
BseNI ACTGG 4 cut(s) 352, 1787, 1925, 2332
BseRI GAGGAG 2 cut(s) 495, 1059
BseXI GCAGC 3 cut(s) 807, 930, 2269
BshFI GGCC 2 cut(s) 140, 1466
BshNI GGYRCC 4 cut(s) 837, 864, 1835, 2093
BshVI ATCGAT 2 cut(s) 694, 2186
BsiHKAI GWGCWC 1 cut(s) 2112
BsiHKCI CYCGRG 1 cut(s) 1322
BsiWI CGTACG 1 cut(s) 1343
BslFI GGGAC 1 cut(s) 2035
BslI CCNNNNNNNGG 3 cut(s) 147, 1363, 1857
BsmAI GTCTC 6 cut(s) 2, 397, 705, 751, 1880, 2308
BsmBI CGTCTC 1 cut(s) 751
BsmFI GGGAC 1 cut(s) 2035
BsmI GAATGC 2 cut(s) 328, 519
BsnI GGCC 2 cut(s) 140, 1466
Bso31I GGTCTC 2 cut(s) 705, 1880
BsoBI CYCGRG 1 cut(s) 1322
Bsp1286I GDGCHC 1 cut(s) 2112
Bsp1407I TGTACA 2 cut(s) 1642, 2146
BspACI CCGC 3 cut(s) 87, 1609, 1612
BspANI GGCC 2 cut(s) 140, 1466
BspCNI CTCAG 6 cut(s) 138, 288, 1275, 1302, 1815, 2124
BspDI ATCGAT 2 cut(s) 694, 2186
BspHI TCATGA 2 cut(s) 220, 523
BspLI GGNNCC 7 cut(s) 43, 839, 866, 1505, 1837, 2095, 2117
BspMAI CTGCAG 2 cut(s) 157, 2230
BspPI GGATC 7 cut(s) 638, 690, 1035, 1348, 1498, 1511, 1902
BspT107I GGYRCC 4 cut(s) 837, 864, 1835, 2093
BspTNI GGTCTC 2 cut(s) 705, 1880
BsrDI GCAATG 2 cut(s) 161, 1598
BsrGI TGTACA 2 cut(s) 1642, 2146
BsrI ACTGG 4 cut(s) 352, 1787, 1925, 2332
BssECI CCNNGG 6 cut(s) 588, 621, 1323, 1839, 1856, 1890
BssNI GRCGYC 1 cut(s) 2048
BssT1I CCWWGG 5 cut(s) 588, 621, 1839, 1856, 1890
Bst2UI CCWGG 3 cut(s) 1728, 1883, 1964
Bst4CI ACNGT 6 cut(s) 452, 476, 688, 911, 1564, 1852
Bst6I CTCTTC 2 cut(s) 746, 2229
BstACI GRCGYC 1 cut(s) 2048
BstAUI TGTACA 2 cut(s) 1642, 2146
BstBAI YACGTR 1 cut(s) 67
BstC8I GCNNGC 2 cut(s) 675, 1587
BstDEI CTNAG 7 cut(s) 146, 296, 1262, 1310, 1753, 1823, 2111
BstENI CCTNNNNNAGG 1 cut(s) 145
BstF5I GGATG 3 cut(s) 247, 283, 859
BstH2I RGCGCY 1 cut(s) 2292
BstHHI GCGC 5 cut(s) 576, 1591, 1771, 2213, 2291
BstMAI GTCTC 6 cut(s) 2, 397, 705, 751, 1880, 2308
BstMWI GCNNNNNNNGC 3 cut(s) 224, 953, 1768
BstNI CCWGG 3 cut(s) 1728, 1883, 1964
BstNSI RCATGY 2 cut(s) 896, 1500
BstSCI CCNGG 3 cut(s) 1726, 1881, 1962
BstSFI CTRYAG 4 cut(s) 153, 824, 1014, 2226
BstV1I GCAGC 3 cut(s) 807, 930, 2269
BstX2I RGATCY 3 cut(s) 1027, 1503, 1894
BstYI RGATCY 3 cut(s) 1027, 1503, 1894
Bsu15I ATCGAT 2 cut(s) 694, 2186
Bsu36I CCTNAGG 1 cut(s) 146
BsuRI GGCC 2 cut(s) 140, 1466
BsuTUI ATCGAT 2 cut(s) 694, 2186
BtsCI GGATG 3 cut(s) 247, 283, 859
BtsI GCAGTG 1 cut(s) 896
BtsIMutI CAGTG 4 cut(s) 457, 684, 896, 2325
Cac8I GCNNGC 2 cut(s) 675, 1587
CciI TCATGA 2 cut(s) 220, 523
CfoI GCGC 5 cut(s) 576, 1591, 1771, 2213, 2291
Cfr13I GGNCC 1 cut(s) 138
ClaI ATCGAT 2 cut(s) 694, 2186
Csp6I GTAC 9 cut(s) 62, 838, 1306, 1344, 1436, 1643, 1836, 2024, 2147
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviQI GTAC 9 cut(s) 62, 838, 1306, 1344, 1436, 1643, 1836, 2024, 2147
DdeI CTNAG 7 cut(s) 146, 296, 1262, 1310, 1753, 1823, 2111
DraI TTTAAA 4 cut(s) 559, 999, 1101, 1830
EaeI YGGCCR 1 cut(s) 1464
Eam1104I CTCTTC 2 cut(s) 746, 2229
EarI CTCTTC 2 cut(s) 746, 2229
EciI GGCGGA 1 cut(s) 1598
Ecl136II GAGCTC 1 cut(s) 2110
Eco130I CCWWGG 5 cut(s) 588, 621, 1839, 1856, 1890
Eco24I GRGCYC 1 cut(s) 2112
Eco31I GGTCTC 2 cut(s) 705, 1880
Eco53kI GAGCTC 1 cut(s) 2110
Eco57I CTGAAG 3 cut(s) 249, 821, 2269
Eco72I CACGTG 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 1322
EcoICRI GAGCTC 1 cut(s) 2110
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 1726, 1881, 1962
EcoT14I CCWWGG 5 cut(s) 588, 621, 1839, 1856, 1890
EcoT22I ATGCAT 2 cut(s) 163, 1626
EcoT38I GRGCYC 1 cut(s) 2112
ErhI CCWWGG 5 cut(s) 588, 621, 1839, 1856, 1890
Esp3I CGTCTC 1 cut(s) 751
FalI AAGNNNNNCTT 2 cut(s) 605, 637
FaqI GGGAC 1 cut(s) 2035
FauI CCCGC 1 cut(s) 80
FbaI TGATCA 1 cut(s) 268
FblI GTMKAC 1 cut(s) 1201
Fnu4HI GCNGC 4 cut(s) 821, 919, 1612, 2258
FokI GGATG 3 cut(s) 254, 290, 866
FriOI GRGCYC 1 cut(s) 2112
Fsp4HI GCNGC 4 cut(s) 821, 919, 1612, 2258
FspBI CTAG 3 cut(s) 497, 1857, 2120
FspI TGCGCA 1 cut(s) 1590
GlaI GCGC 5 cut(s) 575, 1590, 1770, 2212, 2290
GluI GCNGC 4 cut(s) 821, 919, 1612, 2258
GsuI CTGGAG 4 cut(s) 50, 729, 1749, 1904
HaeII RGCGCY 1 cut(s) 2292
HaeIII GGCC 2 cut(s) 140, 1466
HhaI GCGC 5 cut(s) 576, 1591, 1771, 2213, 2291
Hin1I GRCGYC 1 cut(s) 2048
Hin6I GCGC 5 cut(s) 574, 1589, 1769, 2211, 2289
HinP1I GCGC 5 cut(s) 574, 1589, 1769, 2211, 2289
HindIII AAGCTT 1 cut(s) 1871
HinfI GANTC 6 cut(s) 282, 375, 405, 1019, 1979, 2331
HphI GGTGA 3 cut(s) 556, 1549, 1855
Hpy166II GTNNAC 2 cut(s) 64, 1202
Hpy8I GTNNAC 2 cut(s) 64, 1202
Hpy99I CGWCG 1 cut(s) 480
HpyCH4III ACNGT 6 cut(s) 452, 476, 688, 911, 1564, 1852
HpyCH4IV ACGT 4 cut(s) 66, 1342, 1954, 2048
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 953, 1768
HpyF3I CTNAG 7 cut(s) 146, 296, 1262, 1310, 1753, 1823, 2111
HpySE526I ACGT 4 cut(s) 66, 1342, 1954, 2048
Hsp92I GRCGYC 1 cut(s) 2048
HspAI GCGC 5 cut(s) 574, 1589, 1769, 2211, 2289
KpnI GGTACC 2 cut(s) 841, 1839
Ksp22I TGATCA 1 cut(s) 268
LmnI GCTCC 2 cut(s) 261, 817
Lsp1109I GCAGC 3 cut(s) 807, 930, 2269
LweI GCATC 2 cut(s) 148, 2269
MaeI CTAG 3 cut(s) 497, 1857, 2120
MaeII ACGT 4 cut(s) 66, 1342, 1954, 2048
MaeIII GTNAC 6 cut(s) 682, 805, 1132, 1912, 1973, 2127
MflI RGATCY 3 cut(s) 1027, 1503, 1894
MhlI GDGCHC 1 cut(s) 2112
MlsI TGGCCA 1 cut(s) 1466
MluNI TGGCCA 1 cut(s) 1466
MlyI GAGTC 3 cut(s) 384, 399, 1028
MmeI TCCRAC 3 cut(s) 433, 1481, 2291
Mox20I TGGCCA 1 cut(s) 1466
Mph1103I ATGCAT 2 cut(s) 163, 1626
MroXI GAANNNNTTC 1 cut(s) 234
MscI TGGCCA 1 cut(s) 1466
MslI CAYNNNNRTG 4 cut(s) 264, 270, 276, 1565
Msp20I TGGCCA 1 cut(s) 1466
MspA1I CMGCKG 1 cut(s) 541
MspR9I CCNGG 3 cut(s) 1728, 1883, 1964
Mva1269I GAATGC 2 cut(s) 328, 519
MvaI CCWGG 3 cut(s) 1728, 1883, 1964
MwoI GCNNNNNNNGC 3 cut(s) 224, 953, 1768
NlaIV GGNNCC 7 cut(s) 43, 839, 866, 1505, 1837, 2095, 2117
NmeAIII GCCGAG 1 cut(s) 947
NmuCI GTSAC 2 cut(s) 682, 1132
NsbI TGCGCA 1 cut(s) 1590
NsiI ATGCAT 2 cut(s) 163, 1626
NspI RCATGY 2 cut(s) 896, 1500
OliI CACNNNNGTG 1 cut(s) 1565
PagI TCATGA 2 cut(s) 220, 523
PciI ACATGT 1 cut(s) 1496
PctI GAATGC 2 cut(s) 328, 519
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 282, 1979, 2331
Pfl23II CGTACG 1 cut(s) 1343
PfoI TCCNGGA 1 cut(s) 1726
PkrI GCNGC 4 cut(s) 822, 920, 1613, 2259
PleI GAGTC 3 cut(s) 383, 399, 1027
PmaCI CACGTG 1 cut(s) 67
PmlI CACGTG 1 cut(s) 67
PpsI GAGTC 3 cut(s) 383, 399, 1027
Ppu21I YACGTR 1 cut(s) 67
PscI ACATGT 1 cut(s) 1496
PshBI ATTAAT 1 cut(s) 1379
Psp124BI GAGCTC 1 cut(s) 2112
Psp6I CCWGG 3 cut(s) 1726, 1881, 1962
PspCI CACGTG 1 cut(s) 67
PspGI CCWGG 3 cut(s) 1726, 1881, 1962
PspLI CGTACG 1 cut(s) 1343
PspN4I GGNNCC 7 cut(s) 43, 839, 866, 1505, 1837, 2095, 2117
PspPI GGNCC 1 cut(s) 138
PstI CTGCAG 2 cut(s) 157, 2230
PsuI RGATCY 3 cut(s) 1027, 1503, 1894
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 9 cut(s) 63, 839, 1307, 1345, 1437, 1644, 1837, 2025, 2148
RsaNI GTAC 9 cut(s) 62, 838, 1306, 1344, 1436, 1643, 1836, 2024, 2147
RseI CAYNNNNRTG 4 cut(s) 264, 270, 276, 1565
SacI GAGCTC 1 cut(s) 2112
SatI GCNGC 4 cut(s) 821, 919, 1612, 2258
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 3 cut(s) 384, 399, 1028
ScrFI CCNGG 3 cut(s) 1728, 1883, 1964
SduI GDGCHC 1 cut(s) 2112
SfaNI GCATC 2 cut(s) 148, 2269
SfcI CTRYAG 4 cut(s) 153, 824, 1014, 2226
SmiMI CAYNNNNRTG 4 cut(s) 264, 270, 276, 1565
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
SsiI CCGC 3 cut(s) 87, 1609, 1612
SspMI CTAG 3 cut(s) 497, 1857, 2120
SstI GAGCTC 1 cut(s) 2112
StyD4I CCNGG 3 cut(s) 1726, 1881, 1962
StyI CCWWGG 5 cut(s) 588, 621, 1839, 1856, 1890
TaaI ACNGT 6 cut(s) 452, 476, 688, 911, 1564, 1852
TaiI ACGT 4 cut(s) 69, 1345, 1957, 2051
TaqI TCGA 4 cut(s) 478, 694, 1698, 2186
TatI WGTACW 3 cut(s) 1435, 1642, 2146
TauI GCSGC 1 cut(s) 1614
TfiI GAWTC 3 cut(s) 282, 1979, 2331
TscAI CASTG 4 cut(s) 457, 691, 903, 2332
TseFI GTSAC 2 cut(s) 682, 1132
TseI GCWGC 3 cut(s) 820, 918, 2257
Tsp45I GTSAC 2 cut(s) 682, 1132
TspRI CASTG 4 cut(s) 457, 691, 903, 2332
VspI ATTAAT 1 cut(s) 1379
XagI CCTNNNNNAGG 1 cut(s) 145
XapI RAATTY 3 cut(s) 245, 416, 2172
XbaI TCTAGA 1 cut(s) 496
XceI RCATGY 2 cut(s) 896, 1500
XmaJI CCTAGG 1 cut(s) 1856
XmiI GTMKAC 1 cut(s) 1201
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 3 cut(s) 497, 1857, 2120
ZraI GACGTC 1 cut(s) 2049
Zsp2I ATGCAT 2 cut(s) 163, 1626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.