Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000888

Physical Location & Seq

Genomic Coordinates Forward (+)

10522421 .. 10524704

Gene Structure 2284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0134200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGTGCTATGGCTCTAAAAGTTGCATCTCCATACCGATCTGAATGGATCATCCTCATCAATCTTAATCACTATGAACAGGTTTCCAAGACCTCCGGGACTCCTATTAAGTGGTATCAGAGCCCTTTTATGGGGCCGAAGAAGGGTGGTCCACCGCCACCACCACCACCTTCACCTCCACCACCGCCTTCCAGTAGCTCAGAGTTTCCTCCAATGCTGTCACATCCTCGTTCTTCTTCCTCTTCGCGCCATCCAGATCCTAACCCACTAGAGTTGGATCTTCAGCTACATCGCGATCAAACGTCAGCAAATTTTCATGACATCAGGGAGTCCTTGGAGTATATGCGCTCTCAGAATTCTGCTTTACGCTCGGAATTGCTCGAAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009626 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

130

Amino Acids

14.54

Weight (kDa)

6.5

Isoelectric Point (pI)

87.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22710 FvH4_5g23390 FvH4_5g23400 FvH4_5g23400 FvH4_5g23420
malus_domestica	MD06G1024500.v1.1 MD09G1164200.v1.1 MD09G1164500.v1.1 MD17G1163600.v1.1
prunus_persica	Prupe.5G025400_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025600_v2.0.a1
pyrus_communis	pycom06g01980 pycom09g08130 pycom17g15640
rosa_chinensis	RchiOBHm_Chr7g0211261 RchiOBHm_Chr7g0212451 RchiOBHm_Chr7g0212471 RchiOBHm_Chr7g0212481
rosa_laevigata	RLG00000018806
rosa_multiflora	Rmu_sc0005478.1_g000003 Rmu_sc0007576.1_g000003 Rmu_sc0007576.1_g000004 Rmu_sc0007576.1_g000011 Rmu_sc0007576.1_g000012 Rmu_sc0038076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246770 Rroxscaffold_3G00246780 Rroxscaffold_3G00246790 Rroxscaffold_3G00246810 Rroxscaffold_3G00247970
rosa_rugosa	Rorug02G0251500 Rorug07G0124700 Rorug07G0134000 Rorug07G0134100 Rorug07G0134200 Rorug07G0134300 Rorug07G0134400 Rorug07G0134500 Rorug07G0134500 Rorug07G0134700
rosa_samantha	Rh2AG309900 Rh2AG385400 Rh2BG318600 Rh2CG296800 Rh2CG301800 Rh7BG251100 Rh7BG260900 Rh7BG261000 Rh7CG273800 Rh7CG283800 Rh7CG283900 Rh7CG284100 Rh7DG264700 Rh7DG264800 Rh7DG273700 Rh7DG273800 Rh7DG273900
rosa_wichuraiana	Rw2G025080 Rw7G021970 Rw7G022810 Rw7G022820 Rw7G022840 Rw7G022850 Rw7G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	247, 294
AciI	CCGC	2 cut(s)	155, 185
AclWI	GGATC	3 cut(s)	56, 251, 285
AcsI	RAATTY	3 cut(s)	310, 355, 387
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	130, 131, 143
AluBI	AGCT	2 cut(s)	198, 286
AluI	AGCT	2 cut(s)	198, 286
AlwI	GGATC	3 cut(s)	56, 251, 285
AoxI	GGCC	1 cut(s)	134
ApoI	RAATTY	3 cut(s)	310, 355, 387
AspLEI	GCGC	2 cut(s)	249, 348
AspS9I	GGNCC	2 cut(s)	134, 149
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	125
BccI	CCATC	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	97
BfaI	CTAG	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	134, 149
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 131, 143
Bse1I	ACTGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	3 cut(s)	51, 223, 250
BseLI	CCNNNNNNNGG	3 cut(s)	130, 131, 143
BseMII	CTCAG	2 cut(s)	213, 365
BseNI	ACTGG	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	247, 294
BshFI	GGCC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	130, 131, 143
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	38, 48, 256, 277, 295
Bsp68I	TCGCGA	1 cut(s)	294
BspACI	CCGC	2 cut(s)	155, 185
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	2 cut(s)	212, 364
BspFNI	CGCG	2 cut(s)	247, 294
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	3 cut(s)	56, 251, 285
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	5 cut(s)	38, 48, 256, 277, 295
BssT1I	CCWWGG	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	199, 351
BstF5I	GGATG	3 cut(s)	51, 223, 250
BstFNI	CGCG	2 cut(s)	247, 294
BstHHI	GCGC	2 cut(s)	249, 348
BstKTI	GATC	5 cut(s)	41, 51, 259, 280, 298
BstMBI	GATC	5 cut(s)	38, 48, 256, 277, 295
BstSCI	CCNGG	1 cut(s)	95
BstUI	CGCG	2 cut(s)	247, 294
BstX2I	RGATCY	2 cut(s)	256, 277
BstYI	RGATCY	2 cut(s)	256, 277
BsuRI	GGCC	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	51, 223, 250
BtuMI	TCGCGA	1 cut(s)	294
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	2 cut(s)	249, 348
Cfr13I	GGNCC	2 cut(s)	134, 149
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	5 cut(s)	14, 123, 136, 198, 286
CviKI_1	RGCY	5 cut(s)	14, 123, 136, 198, 286
DdeI	CTNAG	2 cut(s)	199, 351
DpnI	GATC	5 cut(s)	40, 50, 258, 279, 297
DpnII	GATC	5 cut(s)	38, 48, 256, 277, 295
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	320
FaiI	YATR	7 cut(s)	11, 34, 75, 131, 318, 342, 344
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	1 cut(s)	316
FokI	GGATG	3 cut(s)	38, 210, 237
FriOI	GRGCYC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	2 cut(s)	248, 347
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	2 cut(s)	249, 348
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	2 cut(s)	247, 346
HinP1I	GCGC	2 cut(s)	247, 346
HinfI	GANTC	2 cut(s)	100, 329
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	5 cut(s)	43, 120, 202, 354, 373
Hpy188III	TCNNGA	3 cut(s)	254, 293, 317
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	136, 180, 198
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	199, 351
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	2 cut(s)	247, 346
Kzo9I	GATC	5 cut(s)	38, 48, 256, 277, 295
LpnPI	CCDG	5 cut(s)	65, 109, 205, 267, 310
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	5 cut(s)	40, 50, 258, 279, 297
MboI	GATC	5 cut(s)	38, 48, 256, 277, 295
MboII	GAAGA	5 cut(s)	151, 225, 228, 234, 272
MflI	RGATCY	2 cut(s)	256, 277
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	4 cut(s)	310, 355, 374, 387
MlyI	GAGTC	2 cut(s)	94, 338
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	6 cut(s)	65, 103, 186, 219, 237, 250
MseI	TTAA	2 cut(s)	66, 108
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	97
MvnI	CGCG	2 cut(s)	247, 294
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	5 cut(s)	38, 48, 256, 277, 295
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	219
NruI	TCGCGA	1 cut(s)	294
PagI	TCATGA	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	95
PleI	GAGTC	2 cut(s)	94, 337
PpsI	GAGTC	2 cut(s)	94, 337
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	134, 149
PsuI	RGATCY	2 cut(s)	256, 277
RruI	TCGCGA	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	66, 108
Sau3AI	GATC	5 cut(s)	38, 48, 256, 277, 295
Sau96I	GGNCC	2 cut(s)	134, 149
SchI	GAGTC	2 cut(s)	94, 338
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	7 cut(s)	84, 95, 172, 178, 200, 288, 305
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	4 cut(s)	310, 355, 374, 387
SsiI	CCGC	2 cut(s)	155, 185
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	381
TasI	AATT	4 cut(s)	310, 355, 374, 387
Tru1I	TTAA	2 cut(s)	66, 108
Tru9I	TTAA	2 cut(s)	66, 108
TseFI	GTSAC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	90, 305
VpaK11BI	GGWCC	1 cut(s)	149
XapI	RAATTY	3 cut(s)	310, 355, 387
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.