Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000888

Physical Location & Seq

Genomic Coordinates Reverse (-)

6246976 .. 6248151

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCATACCTCTTTGCAATACATACAGAAAAACAGGTCCGATTCTCAACTACGTTCTTTGTTTATGTTCAGAGTTACTAGAAGCCACTACTGCAAACAATTTTTCTTGGAGGTTTTAGGCTTCTTACTATGTTGGATTTGCAAAGCGAAAAACCAAGATGGAGGTGCCATATTAAGGGAGCTGGGGAAACTAATTCAATTGAGATGGTTAGGCATTGTACATTTGAGGAAACAAGACGGAAAGGCTCTTTGTTCATCCGTCAAAAAGCTGACCAAACTTCGCGCTTTGTCCATAACTTCGGCAGAAGAGGATGAGATCATTGATCTGCAACACATTTATTCTCCCCCTCCACTGCTTCAGCGCTTATACTTGCAAGGACGATTGGACACATTGCCTCACTGGATACCTTCTATGGACAGCCTTGTCAAGTTTCATCTGAAATGGAGTAGGTTAAAGGACAATCCCCTTGTATTCCTTCAGTATCTGCCCATCCTAGTACATCTCGAATTATCTCAGGTGTCTGAAGGAGACACATTGTGTTTTGGAGCTGGAGGATTTAAGAAGTTCAAACATTTAGGCATTGGTGAGTTTGATGAGCTTAGATGTATAGAGGTGCAGGTGGGAGTAATGTCGTCCATTGAAAAGCTAAGTATCCGGCACTGTAAGTCGTTAGAGAAGGTGCCATCCGGGATTGAACACCTGAACAAGCTGAAGGTGCTTGAATTATTTAATATGCCAGAAAAGTTAGTCAAGACACTGACTCCACACGAACAAGGCAACGATTATTGGAAGGTTGCGCATGTCCCGGAAGTTTATTTCACCAACTTGAGAGAGTCTCGGTGGAGGTCTACCCTTTGGAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

289

Amino Acids

33.52

Weight (kDa)

9.38

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22710 FvH4_5g23390 FvH4_5g23400 FvH4_5g23400 FvH4_5g23420
malus_domestica	MD06G1024500.v1.1 MD09G1164200.v1.1 MD09G1164500.v1.1 MD17G1163600.v1.1
prunus_persica	Prupe.5G025400_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025600_v2.0.a1
pyrus_communis	pycom06g01980 pycom09g08130 pycom17g15640
rosa_chinensis	RchiOBHm_Chr7g0211261 RchiOBHm_Chr7g0212451 RchiOBHm_Chr7g0212471 RchiOBHm_Chr7g0212481
rosa_laevigata	RLG00000018806
rosa_multiflora	Rmu_sc0005478.1_g000003 Rmu_sc0007576.1_g000003 Rmu_sc0007576.1_g000004 Rmu_sc0007576.1_g000011 Rmu_sc0007576.1_g000012 Rmu_sc0038076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246770 Rroxscaffold_3G00246780 Rroxscaffold_3G00246790 Rroxscaffold_3G00246810 Rroxscaffold_3G00247970
rosa_rugosa	Rorug02G0251500 Rorug07G0124700 Rorug07G0134000 Rorug07G0134100 Rorug07G0134200 Rorug07G0134300 Rorug07G0134400 Rorug07G0134500 Rorug07G0134500 Rorug07G0134700
rosa_samantha	Rh2AG309900 Rh2AG385400 Rh2BG318600 Rh2CG296800 Rh2CG301800 Rh7BG251100 Rh7BG260900 Rh7BG261000 Rh7CG273800 Rh7CG283800 Rh7CG283900 Rh7CG284100 Rh7DG264700 Rh7DG264800 Rh7DG273700 Rh7DG273800 Rh7DG273900
rosa_wichuraiana	Rw2G025080 Rw7G021970 Rw7G022810 Rw7G022820 Rw7G022840 Rw7G022850 Rw7G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	607
AasI	GACNNNNNNGTC	1 cut(s)	422
Acc16I	TGCGCA	1 cut(s)	798
Acc36I	ACCTGC	1 cut(s)	607
AccB1I	GGYRCC	2 cut(s)	164, 679
AccI	GTMKAC	1 cut(s)	848
AccII	CGCG	1 cut(s)	282
AcuI	CTGAAG	4 cut(s)	341, 461, 543, 731
AdeI	CACNNNGTG	1 cut(s)	537
AfaI	GTAC	2 cut(s)	219, 498
AfeI	AGCGCT	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	174, 858, 859
AgsI	TTSAA	5 cut(s)	197, 568, 641, 695, 722
AluBI	AGCT	6 cut(s)	181, 268, 548, 598, 646, 709
AluI	AGCT	6 cut(s)	181, 268, 548, 598, 646, 709
Alw26I	GTCTC	2 cut(s)	522, 840
AlwNI	CAGNNNCTG	1 cut(s)	484
Aor51HI	AGCGCT	1 cut(s)	362
AspLEI	GCGC	3 cut(s)	284, 363, 799
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	2 cut(s)	688, 806
AsuHPI	GGTGA	2 cut(s)	596, 811
AvaII	GGWCC	1 cut(s)	36
BanI	GGYRCC	2 cut(s)	164, 679
BccI	CCATC	4 cut(s)	152, 198, 497, 691
BciVI	GTATCC	2 cut(s)	396, 662
BcnI	CCSGG	2 cut(s)	688, 806
BcoDI	GTCTC	2 cut(s)	522, 840
BfaI	CTAG	2 cut(s)	78, 494
BfoI	RGCGCY	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	607
BfuI	GTATCC	2 cut(s)	396, 662
Bme1390I	CCNGG	2 cut(s)	688, 806
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	166, 681
BmrFI	CCNGG	2 cut(s)	688, 806
BplI	GAGNNNNNCTC	2 cut(s)	820, 852
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	847
BpuMI	CCSGG	2 cut(s)	688, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	745, 775
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 858, 859
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	1 cut(s)	389
BseGI	GGATG	4 cut(s)	254, 316, 489, 683
BseLI	CCNNNNNNNGG	3 cut(s)	174, 858, 859
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	404
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	282
BshNI	GGYRCC	2 cut(s)	164, 679
BsiSI	CCGG	3 cut(s)	655, 687, 806
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	3 cut(s)	174, 858, 859
BsmAI	GTCTC	2 cut(s)	522, 840
BsmFI	GGGAC	1 cut(s)	788
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	315, 322
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	166, 681
BspMI	ACCTGC	1 cut(s)	607
BspT107I	GGYRCC	2 cut(s)	164, 679
BsrDI	GCAATG	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	404
BssMI	GATC	2 cut(s)	315, 322
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	1 cut(s)	300
BstAUI	TGTACA	1 cut(s)	217
BstDEI	CTNAG	3 cut(s)	513, 599, 647
BstF5I	GGATG	4 cut(s)	254, 316, 489, 683
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	3 cut(s)	284, 363, 799
BstKTI	GATC	2 cut(s)	318, 325
BstMAI	GTCTC	2 cut(s)	522, 840
BstMBI	GATC	2 cut(s)	315, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 715
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	686, 804
BstUI	CGCG	1 cut(s)	282
BsuI	GTATCC	2 cut(s)	396, 662
BtsCI	GGATG	4 cut(s)	254, 316, 489, 683
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	4 cut(s)	350, 397, 658, 755
BveI	ACCTGC	1 cut(s)	607
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	3 cut(s)	284, 363, 799
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	218, 497
CviAII	CATG	1 cut(s)	800
CviQI	GTAC	2 cut(s)	218, 497
DdeI	CTNAG	3 cut(s)	513, 599, 647
DpnI	GATC	2 cut(s)	317, 324
DpnII	GATC	2 cut(s)	315, 322
DraIII	CACNNNGTG	1 cut(s)	537
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	36
Eco47III	AGCGCT	1 cut(s)	362
Eco57I	CTGAAG	4 cut(s)	341, 461, 543, 731
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	803
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	848
FokI	GGATG	4 cut(s)	241, 323, 476, 670
FspBI	CTAG	2 cut(s)	78, 494
FspI	TGCGCA	1 cut(s)	798
GlaI	GCGC	3 cut(s)	283, 362, 798
GsaI	CCCAGC	1 cut(s)	185
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	364
HapII	CCGG	3 cut(s)	655, 687, 806
HhaI	GCGC	3 cut(s)	284, 363, 799
Hin1II	CATG	1 cut(s)	803
Hin6I	GCGC	3 cut(s)	282, 361, 797
HinP1I	GCGC	3 cut(s)	282, 361, 797
HinfI	GANTC	3 cut(s)	41, 760, 833
HpaII	CCGG	3 cut(s)	655, 687, 806
HphI	GGTGA	2 cut(s)	596, 811
Hpy166II	GTNNAC	1 cut(s)	849
Hpy188I	TCNGA	4 cut(s)	40, 71, 438, 523
Hpy188III	TCNNGA	2 cut(s)	503, 751
Hpy8I	GTNNAC	1 cut(s)	849
HpyAV	CCTTC	6 cut(s)	417, 485, 518, 670, 706, 784
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	7 cut(s)	4, 16, 93, 141, 328, 373, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 715
HpyF3I	CTNAG	3 cut(s)	513, 599, 647
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	803
HspAI	GCGC	3 cut(s)	282, 361, 797
Kzo9I	GATC	2 cut(s)	315, 322
LmnI	GCTCC	2 cut(s)	178, 545
MaeI	CTAG	2 cut(s)	78, 494
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	317, 324
MboI	GATC	2 cut(s)	315, 322
MboII	GAAGA	1 cut(s)	317
MfeI	CAATTG	1 cut(s)	197
MluCI	AATT	5 cut(s)	98, 192, 197, 506, 722
MlyI	GAGTC	2 cut(s)	754, 842
MmeI	TCCRAC	1 cut(s)	113
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	173, 452, 558, 729
MspI	CCGG	3 cut(s)	655, 687, 806
MspR9I	CCNGG	2 cut(s)	688, 806
MunI	CAATTG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	90, 715
NciI	CCSGG	2 cut(s)	688, 806
NdeII	GATC	2 cut(s)	315, 322
NlaIII	CATG	1 cut(s)	803
NlaIV	GGNNCC	2 cut(s)	166, 681
NsbI	TGCGCA	1 cut(s)	798
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	803
PaqCI	CACCTGC	1 cut(s)	607
PfeI	GAWTC	1 cut(s)	41
PfoI	TCCNGGA	2 cut(s)	686, 804
PleI	GAGTC	2 cut(s)	754, 841
PpsI	GAGTC	2 cut(s)	754, 841
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	166, 681
PspPI	GGNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	484
RsaI	GTAC	2 cut(s)	219, 498
RsaNI	GTAC	2 cut(s)	218, 497
SaqAI	TTAA	4 cut(s)	173, 452, 558, 729
Sau3AI	GATC	2 cut(s)	315, 322
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	2 cut(s)	754, 842
ScrFI	CCNGG	2 cut(s)	688, 806
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	826
SmoI	CTYRAG	1 cut(s)	826
Sse9I	AATT	5 cut(s)	98, 192, 197, 506, 722
SspMI	CTAG	2 cut(s)	78, 494
StyD4I	CCNGG	2 cut(s)	686, 804
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	504
TasI	AATT	5 cut(s)	98, 192, 197, 506, 722
TatI	WGTACW	2 cut(s)	217, 496
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	4 cut(s)	173, 452, 558, 729
Tru9I	TTAA	4 cut(s)	173, 452, 558, 729
TscAI	CASTG	4 cut(s)	357, 404, 665, 762
TspDTI	ATGAA	2 cut(s)	243, 422
TspGWI	ACGGA	2 cut(s)	247, 252
TspRI	CASTG	4 cut(s)	357, 404, 665, 762
VpaK11BI	GGWCC	1 cut(s)	36
XceI	RCATGY	1 cut(s)	803
XmiI	GTMKAC	1 cut(s)	848
XspI	CTAG	2 cut(s)	78, 494
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.