Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000888

Physical Location & Seq

Genomic Coordinates Forward (+)

39451839 .. 39452895

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG309900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGGAGAGTGCAGTAAAGTTTCTACTTGACAAGCTTGCACCTCTTTTCGAAAATGAGTTGCAACTTTTGAGGGGGGTTAGGGAAGAAATTTTGCATCTAAGAGGAGAACTGGAGCGCATGACGGCTTTCCTGAGGGTTGCTGATGCATATGAAGAGAGTGATGCGGAGCGCAAAGTATGGGTTAAACAACAAAGAGACATTGCTCACGAAAGTGAAGATGTTCTTGATGAATTTACCCTTCTGCAAGCACATGATCATGGGGAGGGATTATATGGTTCAATCCATAAGCTTTCTTGCTGCATCAAGAATACAAAAGCTCGATATCGAATTGCTTCGGAGTTACGAGCCATAAACTCCAGGATCAAAAAAATCTCTGAGGTTCATAAGCGACTCCGCCACAAATTCAATATGGCTGAACAAGGCTCAAGCTCCAAAAGTGCAGGTTACCTGTTGGAGGACCATCGAGGTGATGCTTTACTTCTAGAGAAAACTGATATAGTGGGCATAGACGAGCCTATTAAGCAGATGGTTGGGATGCTGGTCAATGGTGGTTGTGGACGTGAGGTAGTTTCTGTGGCAGGAATGGGGAAAACTACCCTGGCGAAGCAAGTCTATGATGCAGCAGAAGTGAAGAAACATTTCAAATTACGTGCTTGGATCACTTTTACTCAGTCTTTCAGGCTAGCGGAACTTCTCAAAGACATCGTTCAACAGCTCCACCAAGCAATCCGAAGTCCAGTTCCACAAGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

252

Amino Acids

28.65

Weight (kDa)

7.77

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 87	1.2e-21	Rx N-terminal domain
NB-ARC	PF00931	172 - 242	1.3e-11	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22710 FvH4_5g23390 FvH4_5g23400 FvH4_5g23400 FvH4_5g23420
malus_domestica	MD06G1024500.v1.1 MD09G1164200.v1.1 MD09G1164500.v1.1 MD17G1163600.v1.1
prunus_persica	Prupe.5G025400_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025500_v2.0.a1 Prupe.5G025600_v2.0.a1
pyrus_communis	pycom06g01980 pycom09g08130 pycom17g15640
rosa_chinensis	RchiOBHm_Chr7g0211261 RchiOBHm_Chr7g0212451 RchiOBHm_Chr7g0212471 RchiOBHm_Chr7g0212481
rosa_laevigata	RLG00000018806
rosa_multiflora	Rmu_sc0005478.1_g000003 Rmu_sc0007576.1_g000003 Rmu_sc0007576.1_g000004 Rmu_sc0007576.1_g000011 Rmu_sc0007576.1_g000012 Rmu_sc0038076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246770 Rroxscaffold_3G00246780 Rroxscaffold_3G00246790 Rroxscaffold_3G00246810 Rroxscaffold_3G00247970
rosa_rugosa	Rorug02G0251500 Rorug07G0124700 Rorug07G0134000 Rorug07G0134100 Rorug07G0134200 Rorug07G0134300 Rorug07G0134400 Rorug07G0134500 Rorug07G0134500 Rorug07G0134700
rosa_samantha	Rh2AG309900 Rh2AG385400 Rh2BG318600 Rh2CG296800 Rh2CG301800 Rh7BG251100 Rh7BG260900 Rh7BG261000 Rh7CG273800 Rh7CG283800 Rh7CG283900 Rh7CG284100 Rh7DG264700 Rh7DG264800 Rh7DG273700 Rh7DG273800 Rh7DG273900
rosa_wichuraiana	Rw2G025080 Rw7G021970 Rw7G022810 Rw7G022820 Rw7G022840 Rw7G022850 Rw7G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	434
AciI	CCGC	4 cut(s)	5, 167, 397, 689
AclWI	GGATC	2 cut(s)	371, 668
AcsI	RAATTY	3 cut(s)	90, 233, 404
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	4 cut(s)	282, 409, 646, 713
AjiI	CACGTC	1 cut(s)	563
AjnI	CCWGG	2 cut(s)	359, 600
AleI	CACNNNNGTG	1 cut(s)	213
AluBI	AGCT	5 cut(s)	37, 292, 320, 432, 718
AluI	AGCT	5 cut(s)	37, 292, 320, 432, 718
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	371, 668
ApeKI	GCWGC	2 cut(s)	300, 623
ApoI	RAATTY	3 cut(s)	90, 233, 404
Asp700I	GAANNNNTTC	3 cut(s)	222, 334, 641
AspLEI	GCGC	2 cut(s)	120, 174
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	482
AsuII	TTCGAA	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	685
AvaII	GGWCC	1 cut(s)	460
AxyI	CCTNAGG	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	287, 635
BccI	CCATC	2 cut(s)	471, 523
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	2 cut(s)	361, 602
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	2 cut(s)	485, 686
BfuAI	ACCTGC	1 cut(s)	434
BisI	GCNGC	2 cut(s)	301, 624
BlsI	GCNGC	2 cut(s)	302, 625
Bme1390I	CCNGG	2 cut(s)	361, 602
Bme18I	GGWCC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	361, 602
BmsI	GCATC	7 cut(s)	106, 136, 154, 312, 463, 528, 610
BmtI	GCTAGC	1 cut(s)	689
BpmI	CTGGAG	2 cut(s)	134, 343
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	412
BsaAI	YACGTR	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	117, 740
Bse21I	CCTNAGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	361, 602
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	3 cut(s)	125, 369, 686
BseNI	ACTGG	2 cut(s)	117, 740
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	287, 635
BsgI	GTGCAG	2 cut(s)	33, 462
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	256, 363, 660
BspACI	CCGC	4 cut(s)	5, 167, 397, 689
BspCNI	CTCAG	3 cut(s)	126, 370, 685
BspMI	ACCTGC	1 cut(s)	434
BspOI	GCTAGC	1 cut(s)	689
BspPI	GGATC	2 cut(s)	371, 668
BspT104I	TTCGAA	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	117, 740
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	3 cut(s)	256, 363, 660
Bst2UI	CCWGG	2 cut(s)	361, 602
Bst6I	CTCTTC	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	653
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	39, 249, 687
BstDEI	CTNAG	4 cut(s)	101, 134, 378, 672
BstEII	GGTNACC	1 cut(s)	446
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	120, 174
BstKTI	GATC	3 cut(s)	259, 366, 663
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	256, 363, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 523
BstNI	CCWGG	2 cut(s)	361, 602
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	359, 600
BstV1I	GCAGC	2 cut(s)	287, 635
Bsu36I	CCTNAGG	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	563
BtsCI	GGATG	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	3 cut(s)	39, 249, 687
CfoI	GCGC	2 cut(s)	120, 174
Cfr13I	GGNCC	1 cut(s)	460
CviAII	CATG	3 cut(s)	121, 254, 260
DdeI	CTNAG	4 cut(s)	101, 134, 378, 672
DpnI	GATC	3 cut(s)	258, 365, 662
DpnII	GATC	3 cut(s)	256, 363, 660
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	2 cut(s)	20, 386
Eco32I	GATATC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	460
Eco81I	CCTNAGG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	446
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	446
EcoRII	CCWGG	2 cut(s)	359, 600
EcoRV	GATATC	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	151
FaeI	CATG	3 cut(s)	124, 257, 263
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	3 cut(s)	120, 253, 259
FauNDI	CATATG	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	301, 624
FokI	GGATG	1 cut(s)	550
Fsp4HI	GCNGC	2 cut(s)	301, 624
FspBI	CTAG	2 cut(s)	485, 686
GlaI	GCGC	2 cut(s)	119, 173
GluI	GCNGC	2 cut(s)	301, 624
GsuI	CTGGAG	2 cut(s)	134, 343
HhaI	GCGC	2 cut(s)	120, 174
Hin1II	CATG	3 cut(s)	124, 257, 263
Hin6I	GCGC	2 cut(s)	118, 172
HinP1I	GCGC	2 cut(s)	118, 172
HindIII	AAGCTT	2 cut(s)	35, 290
HinfI	GANTC	1 cut(s)	393
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	3 cut(s)	340, 379, 734
Hpy188III	TCNNGA	5 cut(s)	133, 209, 227, 307, 485
Hpy8I	GTNNAC	1 cut(s)	560
HpyAV	CCTTC	1 cut(s)	251
HpyCH4IV	ACGT	2 cut(s)	562, 652
HpyCH4V	TGCA	9 cut(s)	14, 41, 64, 97, 149, 247, 303, 443, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 523
HpyF3I	CTNAG	4 cut(s)	101, 134, 378, 672
HpySE526I	ACGT	2 cut(s)	562, 652
Hsp92II	CATG	3 cut(s)	124, 257, 263
HspAI	GCGC	2 cut(s)	118, 172
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	256, 363, 660
LmnI	GCTCC	4 cut(s)	115, 169, 437, 723
Lsp1109I	GCAGC	2 cut(s)	287, 635
LweI	GCATC	7 cut(s)	106, 136, 154, 312, 463, 528, 610
MaeI	CTAG	2 cut(s)	485, 686
MaeII	ACGT	2 cut(s)	562, 652
MaeIII	GTNAC	2 cut(s)	342, 446
MalI	GATC	3 cut(s)	258, 365, 662
MboI	GATC	3 cut(s)	256, 363, 660
MboII	GAAGA	4 cut(s)	98, 167, 230, 646
MluCI	AATT	5 cut(s)	90, 233, 330, 404, 647
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	9 cut(s)	54, 66, 98, 129, 259, 373, 451, 461, 559
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	3 cut(s)	222, 334, 641
MseI	TTAA	2 cut(s)	186, 522
MslI	CAYNNNNRTG	3 cut(s)	213, 258, 468
MspR9I	CCNGG	2 cut(s)	361, 602
MvaI	CCWGG	2 cut(s)	361, 602
MwoI	GCNNNNNNNGC	2 cut(s)	11, 523
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	3 cut(s)	256, 363, 660
NheI	GCTAGC	1 cut(s)	685
NlaIII	CATG	3 cut(s)	124, 257, 263
NsiI	ATGCAT	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	51
OliI	CACNNNNGTG	1 cut(s)	213
PdmI	GAANNNNTTC	3 cut(s)	222, 334, 641
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	302, 625
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	359, 600
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	359, 600
PspPI	GGNCC	1 cut(s)	460
RseI	CAYNNNNRTG	3 cut(s)	213, 258, 468
SaqAI	TTAA	2 cut(s)	186, 522
SatI	GCNGC	2 cut(s)	301, 624
Sau3AI	GATC	3 cut(s)	256, 363, 660
Sau96I	GGNCC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	2 cut(s)	361, 602
SfaNI	GCATC	7 cut(s)	106, 136, 154, 312, 463, 528, 610
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	3 cut(s)	213, 258, 468
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	5 cut(s)	90, 233, 330, 404, 647
SsiI	CCGC	4 cut(s)	5, 167, 397, 689
SspMI	CTAG	2 cut(s)	485, 686
StyD4I	CCNGG	2 cut(s)	359, 600
TaiI	ACGT	2 cut(s)	565, 655
TaqI	TCGA	4 cut(s)	51, 322, 328, 466
TasI	AATT	5 cut(s)	90, 233, 330, 404, 647
Tru1I	TTAA	2 cut(s)	186, 522
Tru9I	TTAA	2 cut(s)	186, 522
TseI	GCWGC	2 cut(s)	300, 623
TspDTI	ATGAA	3 cut(s)	168, 246, 374
VpaK11BI	GGWCC	1 cut(s)	460
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	3 cut(s)	90, 233, 404
XbaI	TCTAGA	1 cut(s)	484
XmnI	GAANNNNTTC	3 cut(s)	222, 334, 641
XspI	CTAG	2 cut(s)	485, 686
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.