Rorug07G0134100

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
10519494 .. 10519817
324 bp
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UTR
Exon/CDS
Intron
Rorug07G0134100.1

Sequence Viewer

Length: 324 bp
ATGAAACCATTTACCCTCTTCTCCTCCTCCCAAACCTTCTTTGTAGCCCTCGCTTTCACTCTCCTCTACCTCTTCCTCACCGTCCGATCACACCCCTCGAAACCCAGGCGCTCCCAATCAGACGGCAGTTCCTCCTCCGACGATGACAAAAACGAGAAGCTCTGCAATTGCTTCTGTCACTCTAACGGCGCCCTTTCCGATTACTCGGAACCCGTGGACGCGTCGCACTTGAACGGCGGGACGGAGAAGCAGACGGCCGTTACGGAGATAGAGACGACGGGCGCGTCGATGATGGAGCAGTTAATTGGTTCCTTGATAAACTGA

Protein Analysis

107

Amino Acids

11.67

Weight (kDa)

5.17

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 188
AccII CGCG 2 cut(s) 221, 284
AciI CCGC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 266
AoxI GGCC 1 cut(s) 255
AspLEI GCGC 3 cut(s) 111, 191, 284
AsuHPI GGTGA 1 cut(s) 70
BanI GGYRCC 1 cut(s) 188
BccI CCATC 1 cut(s) 286
BceAI ACGGC 5 cut(s) 139, 202, 242, 250, 270
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 266
BfoI RGCGCY 2 cut(s) 112, 192
Bme1390I CCNGG 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 190, 210, 310
BmrFI CCNGG 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 104, 213
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 104, 213
BseRI GAGGAG 4 cut(s) 13, 16, 53, 124
BseX3I CGGCCG 1 cut(s) 255
Bsh1236I CGCG 2 cut(s) 221, 284
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 266
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 86
BspACI CCGC 1 cut(s) 237
BspANI GGCC 1 cut(s) 257
BspFNI CGCG 2 cut(s) 221, 284
BspLI GGNNCC 3 cut(s) 190, 210, 310
BspT107I GGYRCC 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 104, 213
BssMI GATC 1 cut(s) 86
BssNI GRCGYC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 23, 77
BstACI GRCGYC 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 213
BstFNI CGCG 2 cut(s) 221, 284
BstH2I RGCGCY 2 cut(s) 112, 192
BstHHI GCGC 3 cut(s) 111, 191, 284
BstKTI GATC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 86
BstMCI CGRYCG 1 cut(s) 258
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstUI CGCG 2 cut(s) 221, 284
BstZI CGGCCG 1 cut(s) 255
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 213
CfoI GCGC 3 cut(s) 111, 191, 284
CseI GACGC 3 cut(s) 210, 227, 273
CviJI RGCY 3 cut(s) 47, 160, 257
CviKI_1 RGCY 3 cut(s) 47, 160, 257
DinI GGCGCC 1 cut(s) 190
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
DrdI GACNNNNNNGTC 1 cut(s) 283
DseDI GACNNNNNNGTC 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 255
EagI CGGCCG 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 23, 77
EarI CTCTTC 2 cut(s) 23, 77
EclXI CGGCCG 1 cut(s) 255
Eco52I CGGCCG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 104
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 266
FaqI GGGAC 1 cut(s) 253
FauI CCCGC 1 cut(s) 230
GlaI GCGC 3 cut(s) 110, 190, 283
HaeII RGCGCY 2 cut(s) 112, 192
HaeIII GGCC 1 cut(s) 257
HgaI GACGC 3 cut(s) 210, 227, 273
HhaI GCGC 3 cut(s) 111, 191, 284
Hin1I GRCGYC 1 cut(s) 189
Hin6I GCGC 3 cut(s) 109, 189, 282
HinP1I GCGC 3 cut(s) 109, 189, 282
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 5 cut(s) 86, 121, 139, 199, 208
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 4 cut(s) 143, 226, 280, 289
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 189
HspAI GCGC 3 cut(s) 109, 189, 282
KasI GGCGCC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 116, 295
LpnPI CCDG 2 cut(s) 91, 118
MaeIII GTNAC 2 cut(s) 176, 259
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MboII GAAGA 2 cut(s) 10, 64
MfeI CAATTG 1 cut(s) 166
MluCI AATT 2 cut(s) 166, 303
MluI ACGCGT 1 cut(s) 219
Mly113I GGCGCC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 162
MseI TTAA 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 2 cut(s) 221, 284
NarI GGCGCC 1 cut(s) 189
NdeII GATC 1 cut(s) 86
NlaIV GGNNCC 3 cut(s) 190, 210, 310
NmuCI GTSAC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 2 cut(s) 281, 284
PluTI GGCGCC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 3 cut(s) 190, 210, 310
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 106
SetI ASST 3 cut(s) 38, 72, 162
SfoI GGCGCC 1 cut(s) 190
Sse9I AATT 2 cut(s) 166, 303
SsiI CCGC 1 cut(s) 237
SspDI GGCGCC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 2 cut(s) 98, 287
TasI AATT 2 cut(s) 166, 303
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 257, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.