Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Forward (+)

7138341 .. 7139905

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTGGTTTGCGTTGTTCCCATTTTTTTTAAAAAGAAAAAGAAAAAGAAATAGAAAAGCAGAAAAAAAAGAAAGAAAGAAGGAAAGAAAGAGAGAGAGAAAGAAAAGAGAAAACAAGAACGAAAGAGAGAGAGACAGAGAGAGGGAAGAGACAACAATGGCAGCAGCAAAGATAATACTATCTATGTTGTTGGGTGGATTTGCGATACTGTTTTTGTATCTCTATGAGTCTTTGGTTTTAAAGCAAAGGAGGCAGAGATCAAAGCTTGAAAAGCAGGGAATCAGAGGGCCTCCTTCTTCATCAATTATCTTTGGAAATATCCCGGACATGAAAAGGTTCAAGCTCGAGGTGATGAAGAAATCAACAGCTGCAGGACCCAGTGGTAGTCCAATCTCGAAAGACCATCGTGTTTCCATTAATCATGATTGGCCTTCAACCCTCTTCCCTCATCTGGTGCAATGGCGAAACGAATATGGGCCAATCTTCATGTATTCAACTGGAATCATTCAGCATGTAAGTGTTTCAGATGTAGAGATGGTGAAGGAACTTAGCCTGACATCTTTGAGCTTAGGGCAGCCTGCTTACAAATTGTCTAAGGATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

202

Amino Acids

23.64

Weight (kDa)

10.45

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	269, 340, 435, 495
AluBI	AGCT	4 cut(s)	265, 343, 368, 567
AluI	AGCT	4 cut(s)	265, 343, 368, 567
Alw26I	GTCTC	2 cut(s)	126, 143
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	3 cut(s)	287, 428, 476
ApeKI	GCWGC	4 cut(s)	161, 164, 368, 574
AseI	ATTAAT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	335
AspS9I	GGNCC	3 cut(s)	287, 374, 476
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	361, 550
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	173, 176, 355, 586
BccI	CCATC	2 cut(s)	411, 529
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	126, 143
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	4 cut(s)	162, 165, 369, 575
BlsI	GCNGC	4 cut(s)	163, 166, 370, 576
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	287, 374, 476
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	323
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	378, 502
Bse3DI	GCAATG	1 cut(s)	464
BseCI	ATCGAT	1 cut(s)	601
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	378, 502
BseXI	GCAGC	4 cut(s)	173, 176, 355, 586
BshFI	GGCC	3 cut(s)	289, 430, 478
BshVI	ATCGAT	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	126, 143
BsnI	GGCC	3 cut(s)	289, 430, 478
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	257, 598
BspANI	GGCC	3 cut(s)	289, 430, 478
BspDI	ATCGAT	1 cut(s)	601
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	376
BspMAI	CTGCAG	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	378, 502
BssMI	GATC	2 cut(s)	257, 598
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	2 cut(s)	141, 446
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	3 cut(s)	548, 568, 594
BstKTI	GATC	2 cut(s)	260, 601
BstMAI	GTCTC	2 cut(s)	126, 143
BstMBI	GATC	2 cut(s)	257, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 271
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	4 cut(s)	173, 176, 355, 586
Bsu15I	ATCGAT	1 cut(s)	601
BsuRI	GGCC	3 cut(s)	289, 430, 478
BsuTUI	ATCGAT	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	579
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	3 cut(s)	287, 374, 476
ClaI	ATCGAT	1 cut(s)	601
CviAII	CATG	4 cut(s)	328, 422, 487, 512
CviJI	RGCY	9 cut(s)	265, 289, 343, 368, 430, 478, 552, 567, 577
CviKI_1	RGCY	9 cut(s)	265, 289, 343, 368, 430, 478, 552, 567, 577
DdeI	CTNAG	3 cut(s)	548, 568, 594
DpnI	GATC	2 cut(s)	259, 600
DpnII	GATC	2 cut(s)	257, 598
DraI	TTTAAA	2 cut(s)	30, 240
Eam1104I	CTCTTC	2 cut(s)	141, 446
EarI	CTCTTC	2 cut(s)	141, 446
Eco47I	GGWCC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	2 cut(s)	287, 374
FaeI	CATG	4 cut(s)	331, 425, 490, 515
FaiI	YATR	7 cut(s)	185, 225, 329, 423, 474, 488, 513
FatI	CATG	4 cut(s)	327, 421, 486, 511
Fnu4HI	GCNGC	4 cut(s)	162, 165, 369, 575
Fsp4HI	GCNGC	4 cut(s)	162, 165, 369, 575
GluI	GCNGC	4 cut(s)	162, 165, 369, 575
HaeIII	GGCC	3 cut(s)	289, 430, 478
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	4 cut(s)	331, 425, 490, 515
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	3 cut(s)	227, 279, 501
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	2 cut(s)	361, 550
Hpy188I	TCNGA	2 cut(s)	284, 526
Hpy188III	TCNNGA	2 cut(s)	394, 422
HpyAV	CCTTC	4 cut(s)	73, 303, 441, 535
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	371, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 271
HpyF3I	CTNAG	3 cut(s)	548, 568, 594
Hsp92II	CATG	4 cut(s)	331, 425, 490, 515
Kzo9I	GATC	2 cut(s)	257, 598
LpnPI	CCDG	8 cut(s)	260, 336, 357, 391, 437, 483, 566, 591
Lsp1109I	GCAGC	4 cut(s)	173, 176, 355, 586
MalI	GATC	2 cut(s)	259, 600
MboI	GATC	2 cut(s)	257, 598
MboII	GAAGA	5 cut(s)	158, 288, 367, 433, 475
MluCI	AATT	2 cut(s)	303, 587
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	7 cut(s)	135, 243, 278, 300, 340, 449, 456
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	3 cut(s)	29, 239, 417
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	250, 271
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	2 cut(s)	257, 598
NlaIII	CATG	4 cut(s)	331, 425, 490, 515
NlaIV	GGNNCC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	515
PaeR7I	CTCGAG	1 cut(s)	344
PagI	TCATGA	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	279, 501
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	4 cut(s)	163, 166, 370, 576
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	3 cut(s)	287, 374, 476
PspPPI	RGGWCCY	1 cut(s)	374
PspXI	VCTCGAGB	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	29, 239, 417
SatI	GCNGC	4 cut(s)	162, 165, 369, 575
Sau3AI	GATC	2 cut(s)	257, 598
Sau96I	GGNCC	3 cut(s)	287, 374, 476
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	6 cut(s)	267, 338, 345, 351, 370, 569
SfcI	CTRYAG	1 cut(s)	369
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	303, 587
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	345, 395, 601
TasI	AATT	2 cut(s)	303, 587
TfiI	GAWTC	2 cut(s)	279, 501
Tru1I	TTAA	3 cut(s)	29, 239, 417
Tru9I	TTAA	3 cut(s)	29, 239, 417
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	4 cut(s)	161, 164, 368, 574
TspDTI	ATGAA	4 cut(s)	288, 344, 368, 475
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	417
XceI	RCATGY	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.