Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Reverse (-)

31196174 .. 31198115

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCTAAGAACTTGGGAAAATGAAGTCCAAAGGCAGGGAGAACTTGCTGAAATTAGAGTTGATGATCATTTGAGAAACTTATCAGCAGATGTCATCTCAAAAGCTTGTTTTCATAGCAATTATCATCAAGGAAAAGAAATATTCTCAAAAATTAGGAAGCTGCAAGAAGTTTTGGGAAAGGGATTGATGGGGATAGAAGCCTTGACCAGATGGTTTCCGACAACAGAAAATAGAAAGATACGGATGTTGGAAAAGGAAACTCAATCACTGATATTAAAGGTGGTAAAACAACGTAGTGAAGGTTCATATGAGAAAGATTTGCTGCAAATGCTTCTTGAAGGTGCCAAAAGTTCTGGTGACTTAAATGGCCTATCACACAATAAGTTTATTGTTGATAACTGCAAGACTATATTCTTTGCTGGCCATGAGACCACTGCCCTTGTAGCATCATGGAGCTTGCTGTTACTAGCTCTCCATCCAGATTGGCAAGCTCGTGCTCGAGCTGAGGTACTTGAAATCTGTGGTGATAAGCCTCTAGATGCTGATATGCTTCGACAACTGAAAGTGCTCAGAATGGTGATTCAGGAGGTATTGCGTCTTTACCCGCCTGTACTCTTTGTAGCAAGAGAGAACCCTGATCTATGGGGATCTGATGCTCATAAGTTCAACCCAGAAAGATTTACCAATGGAATTGTCAAGGCTTGCAAGTCTCCACAGGCCTACATGCCATTCGGAGCAGGTTCTCGTATATGTGTTGGTCAACACTTGGCTATGATAGAACTTAAGGTGTTTCTTTCTATAATTCTCTCAAAGTTCTGCTTCTCCCTCTCATCAGCATACCAGCATTCTCCTGCGTATAACATTATTCTGGAGCCTGAATATGGTATTATTCTACAAGTGCGAAGAGCATCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

305

Amino Acids

34.69

Weight (kDa)

8.81

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 210	1.3e-31	Cytochrome P450
p450	PF00067	210 - 287	3.5e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	341
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	1 cut(s)	655
AcoI	YGGCCR	1 cut(s)	421
AfaI	GTAC	2 cut(s)	510, 612
AfiI	CCNNNNNNNGG	2 cut(s)	34, 881
AflII	CTTAAG	1 cut(s)	782
AgsI	TTSAA	3 cut(s)	338, 515, 667
AluBI	AGCT	6 cut(s)	104, 160, 456, 470, 491, 503
AluI	AGCT	6 cut(s)	104, 160, 456, 470, 491, 503
Alw21I	GWGCWC	2 cut(s)	499, 570
Alw26I	GTCTC	2 cut(s)	422, 714
AlwI	GGATC	1 cut(s)	655
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	3 cut(s)	367, 421, 717
ApeKI	GCWGC	2 cut(s)	160, 322
AsuHPI	GGTGA	3 cut(s)	368, 536, 589
AvaI	CYCGRG	1 cut(s)	498
BaeI	ACNNNNGTAYC	2 cut(s)	230, 263
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	2 cut(s)	499, 570
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	147, 309
BccI	CCATC	3 cut(s)	181, 204, 483
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	422, 714
BfaI	CTAG	2 cut(s)	467, 536
BfrI	CTTAAG	1 cut(s)	782
BfuAI	ACCTGC	1 cut(s)	728
BisI	GCNGC	2 cut(s)	161, 323
BlsI	GCNGC	2 cut(s)	162, 324
BmeT110I	CYCGRG	1 cut(s)	498
BmiI	GGNNCC	2 cut(s)	343, 873
BmsI	GCATC	3 cut(s)	455, 529, 643
BpmI	CTGGAG	1 cut(s)	890
Bpu10I	CCTNAGC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	422
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 881
BseGI	GGATG	2 cut(s)	249, 475
BseLI	CCNNNNNNNGG	2 cut(s)	34, 881
BseMII	CTCAG	2 cut(s)	495, 583
BseXI	GCAGC	2 cut(s)	147, 309
BshFI	GGCC	3 cut(s)	369, 423, 719
BshNI	GGYRCC	1 cut(s)	341
BsiHKAI	GWGCWC	2 cut(s)	499, 570
BsiHKCI	CYCGRG	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	34, 881
BsmAI	GTCTC	2 cut(s)	422, 714
BsmI	GAATGC	1 cut(s)	844
BsnI	GGCC	3 cut(s)	369, 423, 719
Bso31I	GGTCTC	1 cut(s)	422
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	499, 570
Bsp143I	GATC	3 cut(s)	64, 637, 647
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	3 cut(s)	369, 423, 719
BspCNI	CTCAG	2 cut(s)	496, 582
BspLI	GGNNCC	2 cut(s)	343, 873
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	1 cut(s)	655
BspQI	GCTCTTC	1 cut(s)	898
BspT107I	GGYRCC	1 cut(s)	341
BspTI	CTTAAG	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	422
BssMI	GATC	3 cut(s)	64, 637, 647
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst6I	CTCTTC	1 cut(s)	898
BstAFI	CTTAAG	1 cut(s)	782
BstC8I	GCNNGC	4 cut(s)	421, 458, 489, 703
BstDEI	CTNAG	3 cut(s)	5, 504, 569
BstF5I	GGATG	2 cut(s)	249, 475
BstKTI	GATC	3 cut(s)	67, 640, 650
BstMAI	GTCTC	2 cut(s)	422, 714
BstMBI	GATC	3 cut(s)	64, 637, 647
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 443
BstNSI	RCATGY	1 cut(s)	727
BstV1I	GCAGC	2 cut(s)	147, 309
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	3 cut(s)	369, 423, 719
BtsCI	GGATG	2 cut(s)	249, 475
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	266, 432
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	4 cut(s)	421, 458, 489, 703
CseI	GACGC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	509, 611
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	3 cut(s)	425, 450, 724
CviQI	GTAC	2 cut(s)	509, 611
DdeI	CTNAG	3 cut(s)	5, 504, 569
DpnI	GATC	3 cut(s)	66, 639, 649
DpnII	GATC	3 cut(s)	64, 637, 647
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	898
EarI	CTCTTC	1 cut(s)	898
Eco147I	AGGCCT	1 cut(s)	719
Eco31I	GGTCTC	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	498
FaeI	CATG	3 cut(s)	428, 453, 727
FalI	AAGNNNNNCTT	2 cut(s)	803, 835
FatI	CATG	3 cut(s)	424, 449, 723
FauI	CCCGC	1 cut(s)	612
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	161, 323
FokI	GGATG	2 cut(s)	256, 462
Fsp4HI	GCNGC	2 cut(s)	161, 323
FspBI	CTAG	2 cut(s)	467, 536
GluI	GCNGC	2 cut(s)	161, 323
GsuI	CTGGAG	1 cut(s)	890
HaeIII	GGCC	3 cut(s)	369, 423, 719
HgaI	GACGC	1 cut(s)	584
Hin1II	CATG	3 cut(s)	428, 453, 727
HincII	GTYRAC	1 cut(s)	761
HindII	GTYRAC	1 cut(s)	761
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	1 cut(s)	580
HphI	GGTGA	3 cut(s)	368, 536, 589
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188I	TCNGA	4 cut(s)	219, 572, 652, 734
Hpy188III	TCNNGA	5 cut(s)	335, 479, 536, 584, 869
Hpy8I	GTNNAC	1 cut(s)	761
HpyAV	CCTTC	2 cut(s)	293, 332
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	163, 325, 402, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 443
HpyF3I	CTNAG	3 cut(s)	5, 504, 569
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	428, 453, 727
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	64, 637, 647
LguI	GCTCTTC	1 cut(s)	898
LmnI	GCTCC	3 cut(s)	453, 734, 871
Lsp1109I	GCAGC	2 cut(s)	147, 309
LweI	GCATC	3 cut(s)	455, 529, 643
MaeI	CTAG	2 cut(s)	467, 536
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	356, 462
MalI	GATC	3 cut(s)	66, 639, 649
MboI	GATC	3 cut(s)	64, 637, 647
MboII	GAAGA	1 cut(s)	915
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	2 cut(s)	499, 570
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	5 cut(s)	51, 118, 150, 690, 801
MluNI	TGGCCA	1 cut(s)	423
MmeI	TCCRAC	2 cut(s)	228, 242
MnlI	CCTC	4 cut(s)	499, 543, 580, 836
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	3 cut(s)	275, 362, 783
Msp20I	TGGCCA	1 cut(s)	423
MspCI	CTTAAG	1 cut(s)	782
Mva1269I	GAATGC	1 cut(s)	844
MwoI	GCNNNNNNNGC	2 cut(s)	328, 443
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	3 cut(s)	64, 637, 647
NlaIII	CATG	3 cut(s)	428, 453, 727
NlaIV	GGNNCC	2 cut(s)	343, 873
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	1 cut(s)	727
PaeR7I	CTCGAG	1 cut(s)	498
PceI	AGGCCT	1 cut(s)	719
PciSI	GCTCTTC	1 cut(s)	898
PctI	GAATGC	1 cut(s)	844
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	162, 324
PspN4I	GGNNCC	2 cut(s)	343, 873
PspXI	VCTCGAGB	1 cut(s)	498
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PsuI	RGATCY	1 cut(s)	647
RsaI	GTAC	2 cut(s)	510, 612
RsaNI	GTAC	2 cut(s)	509, 611
SapI	GCTCTTC	1 cut(s)	898
SaqAI	TTAA	3 cut(s)	275, 362, 783
SatI	GCNGC	2 cut(s)	161, 323
Sau3AI	GATC	3 cut(s)	64, 637, 647
SduI	GDGCHC	2 cut(s)	499, 570
SfaNI	GCATC	3 cut(s)	455, 529, 643
Sfr274I	CTCGAG	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	498, 782
SmoI	CTYRAG	2 cut(s)	498, 782
Sse9I	AATT	5 cut(s)	51, 118, 150, 690, 801
SseBI	AGGCCT	1 cut(s)	719
SsiI	CCGC	1 cut(s)	605
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	467, 536
StuI	AGGCCT	1 cut(s)	719
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	499, 553
TasI	AATT	5 cut(s)	51, 118, 150, 690, 801
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	3 cut(s)	275, 362, 783
Tru9I	TTAA	3 cut(s)	275, 362, 783
TscAI	CASTG	2 cut(s)	273, 439
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	2 cut(s)	160, 322
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	36, 101, 294
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	2 cut(s)	273, 439
Vha464I	CTTAAG	1 cut(s)	782
XbaI	TCTAGA	1 cut(s)	535
XceI	RCATGY	1 cut(s)	727
XhoI	CTCGAG	1 cut(s)	498
XspI	CTAG	2 cut(s)	467, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.