Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003762.1

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Forward (+)

39762 .. 45503

Gene Structure 5742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003762.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atggaaaagcaaggaattcgagggccgcgtcctacctttctattgggaagcctcccagaacagaagaggctccaaagcaagcagcagggtcagtcaatagcaacaaggactgatgatgatgatgatgatgatcatgcagcttctttttctcatcaatggtatttgaaaatcttcccccacatagagcaatggagaaatgaatacgtcgattctacaaccacaatgctcagaacttgggaaaatgaagtccaaaggcagggagaacttgctgaaattagagttgatgatcatttgagaaacttatcagcagatgtcatctcaaaagcttgttttcatagcaattatcatcaaggaaaagaaatattctcaaaaattaggaagctgcaagaagttttgggaaagggattgatggggatagaagccttgaccagatggtttccgacaacagaaaatataaagatatggatgttggaaaaggaaactcaatcactgatattgaaggtggtaaaacaacgtagtgaaggttcatatgagaaagatttgctgcaaatgcttcttgaaggtgccaaaagttctggtgatttaaatggcctatcatacaataagtttattgttgataactgcaagactatattctttgctggccatgagaccactgcccttgtagcatcatggagcttgctgttactagctctccatccagattggcaagctcgtgctcgagctgaggtacttgaaatctgtgttgataagcctctagatgctgatatgcttcgacaaatgaaagtgctcacaatggtgattcaggaggtattgcgtctttacccgcctgtactctttgtagcaagagaggtatttgaaactatcaaatttaaaaacataacaattccaaaggggacgctacttcaaataccaatccccttcttacaccagaaccttgatctatggggatctgatgctcataagttcaacccagaaagatttaccaatggaattgtcaaggcttgcaagtctccacaggcctacatgccattcggagcaggttctcgtatatgtgttggtcaacacttggctatgatagaacttaaggtgtttctttctataattctctcaaagttctgcttctccctctcatcagcataccagcattctcctgcgtataacattattctggagcctgaatatggtattattctacaaatgcgaagagcatctccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

406

Amino Acids

46.51

Weight (kDa)

7.67

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1031
AccB1I	GGYRCC	1 cut(s)	563
AccII	CGCG	1 cut(s)	28
AciI	CCGC	2 cut(s)	26, 827
AclWI	GGATC	1 cut(s)	958
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	2 cut(s)	15, 869
AfaI	GTAC	2 cut(s)	732, 834
AfiI	CCNNNNNNNGG	2 cut(s)	256, 1184
AflII	CTTAAG	1 cut(s)	1085
AgsI	TTSAA	7 cut(s)	166, 499, 560, 737, 860, 908, 970
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	7 cut(s)	140, 326, 382, 678, 692, 713, 725
AluI	AGCT	7 cut(s)	140, 326, 382, 678, 692, 713, 725
Alw21I	GWGCWC	2 cut(s)	721, 792
Alw26I	GTCTC	2 cut(s)	644, 1017
AlwI	GGATC	1 cut(s)	958
Ama87I	CYCGRG	1 cut(s)	720
AoxI	GGCC	4 cut(s)	23, 589, 643, 1020
ApeKI	GCWGC	4 cut(s)	82, 137, 382, 544
ApoI	RAATTY	2 cut(s)	15, 869
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	590, 811
AvaI	CYCGRG	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	563
BauI	CACGAG	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	721, 792
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	4 cut(s)	94, 149, 369, 531
BccI	CCATC	3 cut(s)	403, 426, 705
BcgI	CGANNNNNNTGC	1 cut(s)	33
BclI	TGATCA	2 cut(s)	130, 286
BcoDI	GTCTC	2 cut(s)	644, 1017
BfaI	CTAG	2 cut(s)	689, 758
BfrI	CTTAAG	1 cut(s)	1085
BfuAI	ACCTGC	1 cut(s)	1031
BisI	GCNGC	5 cut(s)	26, 83, 138, 383, 545
BlsI	GCNGC	5 cut(s)	27, 84, 139, 384, 546
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	3 cut(s)	71, 565, 1176
BmsI	GCATC	3 cut(s)	677, 751, 946
BpmI	CTGGAG	1 cut(s)	1193
Bpu10I	CCTNAGC	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	644
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 1184
Bse3DI	GCAATG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	129
BseGI	GGATG	2 cut(s)	471, 697
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	256, 1184
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	241, 717
BseXI	GCAGC	4 cut(s)	94, 149, 369, 531
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	4 cut(s)	25, 591, 645, 1022
BshNI	GGYRCC	1 cut(s)	563
BsiHKAI	GWGCWC	2 cut(s)	721, 792
BsiHKCI	CYCGRG	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	910
BslI	CCNNNNNNNGG	2 cut(s)	256, 1184
BsmAI	GTCTC	2 cut(s)	644, 1017
BsmFI	GGGAC	1 cut(s)	910
BsmI	GAATGC	1 cut(s)	1147
BsnI	GGCC	4 cut(s)	25, 591, 645, 1022
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	720
Bsp1286I	GDGCHC	2 cut(s)	721, 792
Bsp143I	GATC	4 cut(s)	130, 286, 940, 950
BspACI	CCGC	2 cut(s)	26, 827
BspANI	GGCC	4 cut(s)	25, 591, 645, 1022
BspCNI	CTCAG	2 cut(s)	240, 718
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	71, 565, 1176
BspMI	ACCTGC	1 cut(s)	1031
BspPI	GGATC	1 cut(s)	958
BspQI	GCTCTTC	1 cut(s)	1201
BspT107I	GGYRCC	1 cut(s)	563
BspTI	CTTAAG	1 cut(s)	1085
BspTNI	GGTCTC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	194
BssMI	GATC	4 cut(s)	130, 286, 940, 950
BssSI	CACGAG	1 cut(s)	714
Bst2BI	CACGAG	1 cut(s)	714
Bst6I	CTCTTC	2 cut(s)	59, 1201
BstAFI	CTTAAG	1 cut(s)	1085
BstC8I	GCNNGC	5 cut(s)	80, 643, 680, 711, 1006
BstDEI	CTNAG	2 cut(s)	227, 726
BstF5I	GGATG	2 cut(s)	471, 697
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	4 cut(s)	133, 289, 943, 953
BstMAI	GTCTC	2 cut(s)	644, 1017
BstMBI	GATC	4 cut(s)	130, 286, 940, 950
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 665
BstNSI	RCATGY	1 cut(s)	1030
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	4 cut(s)	94, 149, 369, 531
BstX2I	RGATCY	1 cut(s)	950
BstYI	RGATCY	1 cut(s)	950
BsuRI	GGCC	4 cut(s)	25, 591, 645, 1022
BtsCI	GGATG	2 cut(s)	471, 697
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	488, 654
BveI	ACCTGC	1 cut(s)	1031
Cac8I	GCNNGC	5 cut(s)	80, 643, 680, 711, 1006
Cfr13I	GGNCC	1 cut(s)	23
CseI	GACGC	3 cut(s)	17, 806, 907
Csp6I	GTAC	2 cut(s)	731, 833
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	4 cut(s)	134, 647, 672, 1027
CviQI	GTAC	2 cut(s)	731, 833
DdeI	CTNAG	2 cut(s)	227, 726
DpnI	GATC	4 cut(s)	132, 288, 942, 952
DpnII	GATC	4 cut(s)	130, 286, 940, 950
DraI	TTTAAA	2 cut(s)	585, 874
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	2 cut(s)	59, 1201
EarI	CTCTTC	2 cut(s)	59, 1201
Eco147I	AGGCCT	1 cut(s)	1022
Eco31I	GGTCTC	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	720
EcoRI	GAATTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	137, 650, 675, 1030
FalI	AAGNNNNNCTT	2 cut(s)	1106, 1138
FaqI	GGGAC	1 cut(s)	910
FatI	CATG	4 cut(s)	133, 646, 671, 1026
FauI	CCCGC	1 cut(s)	834
FauNDI	CATATG	1 cut(s)	529
FbaI	TGATCA	2 cut(s)	130, 286
Fnu4HI	GCNGC	5 cut(s)	26, 83, 138, 383, 545
FokI	GGATG	2 cut(s)	478, 684
Fsp4HI	GCNGC	5 cut(s)	26, 83, 138, 383, 545
FspBI	CTAG	2 cut(s)	689, 758
GluI	GCNGC	5 cut(s)	26, 83, 138, 383, 545
GsuI	CTGGAG	1 cut(s)	1193
HaeIII	GGCC	4 cut(s)	25, 591, 645, 1022
HgaI	GACGC	3 cut(s)	17, 806, 907
Hin1II	CATG	4 cut(s)	137, 650, 675, 1030
HincII	GTYRAC	1 cut(s)	1064
HindII	GTYRAC	1 cut(s)	1064
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	2 cut(s)	209, 802
HphI	GGTGA	2 cut(s)	590, 811
Hpy166II	GTNNAC	1 cut(s)	1064
Hpy188I	TCNGA	4 cut(s)	230, 441, 955, 1037
Hpy188III	TCNNGA	5 cut(s)	557, 701, 758, 806, 1172
Hpy8I	GTNNAC	1 cut(s)	1064
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	493, 515, 554, 931
HpyCH4IV	ACGT	2 cut(s)	204, 514
HpyCH4V	TGCA	5 cut(s)	137, 385, 547, 624, 1008
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 665
HpyF3I	CTNAG	2 cut(s)	227, 726
HpySE526I	ACGT	2 cut(s)	204, 514
Hsp92II	CATG	4 cut(s)	137, 650, 675, 1030
Ksp22I	TGATCA	2 cut(s)	130, 286
Kzo9I	GATC	4 cut(s)	130, 286, 940, 950
LguI	GCTCTTC	1 cut(s)	1201
LmnI	GCTCC	4 cut(s)	75, 675, 1037, 1174
Lsp1109I	GCAGC	4 cut(s)	94, 149, 369, 531
LweI	GCATC	3 cut(s)	677, 751, 946
MaeI	CTAG	2 cut(s)	689, 758
MaeII	ACGT	2 cut(s)	204, 514
MaeIII	GTNAC	1 cut(s)	684
MalI	GATC	4 cut(s)	132, 288, 942, 952
MboI	GATC	4 cut(s)	130, 286, 940, 950
MboII	GAAGA	3 cut(s)	76, 163, 1218
MflI	RGATCY	1 cut(s)	950
MhlI	GDGCHC	2 cut(s)	721, 792
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	8 cut(s)	15, 273, 340, 372, 869, 885, 993, 1104
MluNI	TGGCCA	1 cut(s)	645
MmeI	TCCRAC	2 cut(s)	450, 464
MnlI	CCTC	8 cut(s)	14, 60, 62, 721, 765, 802, 844, 1139
Mox20I	TGGCCA	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	3 cut(s)	584, 873, 1086
MslI	CAYNNNNRTG	1 cut(s)	797
Msp20I	TGGCCA	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	1085
Mva1269I	GAATGC	1 cut(s)	1147
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	550, 665
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	4 cut(s)	130, 286, 940, 950
NlaIII	CATG	4 cut(s)	137, 650, 675, 1030
NlaIV	GGNNCC	3 cut(s)	71, 565, 1176
NspI	RCATGY	1 cut(s)	1030
OliI	CACNNNNGTG	1 cut(s)	797
PaeR7I	CTCGAG	1 cut(s)	720
PceI	AGGCCT	1 cut(s)	1022
PciSI	GCTCTTC	1 cut(s)	1201
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PctI	GAATGC	1 cut(s)	1147
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	209, 802
PkrI	GCNGC	5 cut(s)	27, 84, 139, 384, 546
PspN4I	GGNNCC	3 cut(s)	71, 565, 1176
PspPI	GGNCC	1 cut(s)	23
PspXI	VCTCGAGB	1 cut(s)	720
PsrI	GAACNNNNNNTAC	2 cut(s)	508, 540
PsuI	RGATCY	1 cut(s)	950
RsaI	GTAC	2 cut(s)	732, 834
RsaNI	GTAC	2 cut(s)	731, 833
RseI	CAYNNNNRTG	1 cut(s)	797
SapI	GCTCTTC	1 cut(s)	1201
SaqAI	TTAA	3 cut(s)	584, 873, 1086
SatI	GCNGC	5 cut(s)	26, 83, 138, 383, 545
Sau3AI	GATC	4 cut(s)	130, 286, 940, 950
Sau96I	GGNCC	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	721, 792
SfaNI	GCATC	3 cut(s)	677, 751, 946
Sfr274I	CTCGAG	1 cut(s)	720
SlaI	CTCGAG	1 cut(s)	720
SmiI	ATTTAAAT	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	720, 1085
SmoI	CTYRAG	2 cut(s)	720, 1085
Sse9I	AATT	8 cut(s)	15, 273, 340, 372, 869, 885, 993, 1104
SseBI	AGGCCT	1 cut(s)	1022
SsiI	CCGC	2 cut(s)	26, 827
SspI	AATATT	1 cut(s)	363
SspMI	CTAG	2 cut(s)	689, 758
StuI	AGGCCT	1 cut(s)	1022
SwaI	ATTTAAAT	1 cut(s)	585
TaiI	ACGT	2 cut(s)	207, 517
TaqI	TCGA	4 cut(s)	19, 207, 721, 775
TasI	AATT	8 cut(s)	15, 273, 340, 372, 869, 885, 993, 1104
TatI	WGTACW	1 cut(s)	832
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	209, 802
Tru1I	TTAA	3 cut(s)	584, 873, 1086
Tru9I	TTAA	3 cut(s)	584, 873, 1086
TscAI	CASTG	2 cut(s)	495, 661
TseI	GCWGC	4 cut(s)	82, 137, 382, 544
TspDTI	ATGAA	5 cut(s)	213, 258, 323, 516, 797
TspRI	CASTG	2 cut(s)	495, 661
Vha464I	CTTAAG	1 cut(s)	1085
XapI	RAATTY	2 cut(s)	15, 869
XbaI	TCTAGA	1 cut(s)	757
XceI	RCATGY	1 cut(s)	1030
XhoI	CTCGAG	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	689, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.