Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Reverse (-)

44103138 .. 44103422

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGATAATGGTAGCAATCAAACGCGTGGTAGACTACGCCGTCACCATGGCGGCAGCAAGCTCTCGTCTTGAAGACCTGACCGGCACCGAAATCGAGCGGACATATGAACTCGGCTGCGAAGAATTCGGAATCACCTACCTCTGCATCGACAAGGTCACCGCCGACAAGTTCGCTTGCAAATTGATTTCGAAGCGTGTCGCAAAGATGGTAGTACCGTCGTATTGGTGGGTGGGCTTTTGTTCTTGTTTTCATATTTGTGTGAACTTCGCTGTTGAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

94

Amino Acids

10.59

Weight (kDa)

6.54

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	53, 100, 162
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	56, 117
ApoI	RAATTY	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	37, 127, 151
AsuII	TTCGAA	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	68, 104
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BisI	GCNGC	3 cut(s)	54, 57, 118
BlsI	GCNGC	3 cut(s)	55, 58, 119
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	48
Bse118I	RCCGGY	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	68, 104
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	84
BsnI	GGCC	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	3 cut(s)	53, 100, 162
BspANI	GGCC	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	61, 178
BstDSI	CCRYGG	1 cut(s)	48
BstEII	GGTNACC	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstPI	GGTNACC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	68, 104
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	61, 178
Cfr10I	RCCGGY	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	4 cut(s)	63, 117, 237, 281
CviKI_1	RGCY	4 cut(s)	63, 117, 237, 281
CviQI	GTAC	1 cut(s)	215
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	50, 106, 108, 255
FatI	CATG	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	54, 57, 118
Fsp4HI	GCNGC	3 cut(s)	54, 57, 118
GluI	GCNGC	3 cut(s)	54, 57, 118
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	3 cut(s)	37, 127, 151
Hpy166II	GTNNAC	2 cut(s)	34, 265
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	2 cut(s)	34, 265
Hpy99I	CGWCG	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	147, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	52
LpnPI	CCDG	2 cut(s)	92, 97
Lsp1109I	GCAGC	2 cut(s)	68, 104
LweI	GCATC	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	43, 157
MbiI	CCGCTC	1 cut(s)	100
MboII	GAAGA	3 cut(s)	16, 86, 134
MluCI	AATT	2 cut(s)	125, 182
MluI	ACGCGT	1 cut(s)	25
MnlI	CCTC	2 cut(s)	152, 271
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	48
NdeI	CATATG	1 cut(s)	106
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	88
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	43, 157
NspV	TTCGAA	1 cut(s)	191
PceI	AGGCCT	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	132
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	55, 58, 119
PspEI	GGTNACC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	258
SatI	GCNGC	3 cut(s)	54, 57, 118
SetI	ASST	5 cut(s)	65, 81, 140, 144, 159
SfaNI	GCATC	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	125, 182
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	3 cut(s)	53, 100, 162
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	96, 150, 191
TasI	AATT	2 cut(s)	125, 182
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	43, 157
TseI	GCWGC	2 cut(s)	56, 117
Tsp45I	GTSAC	2 cut(s)	43, 157
TspDTI	ATGAA	3 cut(s)	17, 123, 242
Tth111I	GACNNNGTC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.