Rh1AG193600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001937
Physical Location & Seq
Forward (+)
36978907 .. 36987939
9033 bp
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UTR
Exon/CDS
Intron
Rh1AG193600.1

Sequence Viewer

Length: 1491 bp
ATGGAAGCAGAGTTAGCAGTAGCTGCAAAGATGGTAGTACTGTCAGTATTGGTGTGTGGGCTTTTGTTCTTGGTTTCATATTTGTGTGAACTTCTGCTGTTGAGGCCTAAATCCATAAGATCAAAGCTGGAAAAGCAAGGAATTCGAGGGCCGCGTCCTACCTTTCTATTGGGAAACCTCCCTGAACAGAAGAGGCTCCAAAGCAAGCAGCAGGGTCAGTCAATAGGAACAAGGACTGATGATGATGATGATCATGCAGCTTCTGTTTCTCATCAATGGTATTTGAAAATCTTCCCCCACATAGAGCAATGGAGAAATGAATACGGTCCAATATTTTTGTGTTCATCTGCACACATACAACATTTAGTAATAACAGATATGGAAGTGGTGAAAGAAATTAGCTTGTGTAAGTCTCTAGTCTTGGGAAAACCTTCCGCAACATCCAAGGTTCTTGGGTCACTATTGGGAGAGGGCATTTTAGCGTCAAACGGATCAATGTGGGAGCATCAAAGGAAAATTATCGCTCCTGAACTATACCTTGATAAGGTGAAGGGCATGATGAACCTGTTAGTGGATTCTACAACCTCAATGCTAAGAACTTGGGAAAATGAAGTCCAAAGCCAGGGAGAACTTGCTGATATTAGAGTTGACGATCATTTGAGAAACTTATCAGCAGATGTCATCTCAAAAGCTTGTTTTCATAGCAATTATCATCAAGGAAAAGAAATATTCTCAAAAATTAGGAAGATGCAAGAAGTTTTGGGAAAGGGATTGATGGGGATAGAAGCCTTGACCAGATGGTTTCCGACAACCGAAAATAGAAAGATATGGATGTTGGAAAAGGAAACTCAATCACTGATATTGAAGGTGGTAAAACAACGTAATGAAGGTTCATATGAGAAAGATTTGCTGCAAATGCTTCTTGAAGGTGCCAAAAGTTCTGGTGACTTAAATGGCCTATCACACAATAAGTTTATTGTTGATAACTGCAAGACTATATTCTTTGCTGGCCATGAGACCACTGCCCTTGTAACATCATGGAGCTTGCTGTTACTAGCTCTCCATCCAGATTGGCAAGCTCGTGCTCGAGCTGAGGTACTTGAAATCTGTGGTGATAAGCCTCTAGATGCAGATATGCTTCGACAAATGAAAGTGCTCACAATGGTGATTCAGGAGGTATTGCGTCTTTACCCGCCTGCACTCTTTCTATCAAGAGAGTTTGGGAAAATTACTGGTACCATATCTGTAGGTGACATTGCAGAACTGTTTGGTTTGAATATTGAAGGCCGTGAGATCAACCTTAACCAAAAGAAGAGAAAAGGGGATTCTGATTTCATTAAAAGACGATTCCCTGGAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACAAATCAAAGATGTAGCTAAACTGAGGGGGCTTGAGAATGAAGTACCATACATAGAGGACCTAGATTCAATCTCTCTCTCTATGCCTGGGCACCCGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

496

Amino Acids

56.01

Weight (kDa)

8.31

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 99 - 406 5.7e-46 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1235
AccB1I GGYRCC 3 cut(s) 929, 1235, 1479
AccII CGCG 1 cut(s) 154
AciI CCGC 4 cut(s) 152, 435, 1193, 1484
AclWI GGATC 2 cut(s) 499, 1372
AcoI YGGCCR 1 cut(s) 1009
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 4 cut(s) 39, 1098, 1237, 1434
AfiI CCNNNNNNNGG 3 cut(s) 544, 571, 622
AgsI TTSAA 7 cut(s) 286, 865, 926, 1103, 1276, 1283, 1458
AjnI CCWGG 4 cut(s) 621, 1351, 1380, 1474
AleI CACNNNNGTG 1 cut(s) 1163
Alw21I GWGCWC 2 cut(s) 1087, 1158
Alw26I GTCTC 2 cut(s) 417, 1010
AlwI GGATC 2 cut(s) 499, 1372
AlwNI CAGNNNCTG 2 cut(s) 23, 263
Ama87I CYCGRG 1 cut(s) 1086
AoxI GGCC 5 cut(s) 104, 149, 955, 1009, 1285
ApeKI GCWGC 4 cut(s) 23, 208, 257, 910
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 2 cut(s) 290, 430
Asp718I GGTACC 1 cut(s) 1235
AspS9I GGNCC 3 cut(s) 149, 326, 1447
AsuHPI GGTGA 7 cut(s) 400, 559, 956, 1124, 1177, 1262, 1387
AvaI CYCGRG 1 cut(s) 1086
AvaII GGWCC 2 cut(s) 326, 1447
BaeGI GKGCMC 1 cut(s) 1482
BalI TGGCCA 1 cut(s) 1011
BanI GGYRCC 3 cut(s) 929, 1235, 1479
BauI CACGAG 1 cut(s) 1080
Bbv12I GWGCWC 2 cut(s) 1087, 1158
BbvCI CCTCAGC 1 cut(s) 1092
BbvI GCAGC 4 cut(s) 10, 220, 269, 897
BccI CCATC 4 cut(s) 25, 769, 792, 1071
BceAI ACGGC 1 cut(s) 1272
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 4 cut(s) 623, 1353, 1382, 1476
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 417, 1010
BfaI CTAG 4 cut(s) 416, 1055, 1124, 1451
BfmI CTRYAG 1 cut(s) 1245
BisI GCNGC 5 cut(s) 24, 152, 209, 258, 911
BlsI GCNGC 5 cut(s) 25, 153, 210, 259, 912
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 4 cut(s) 623, 1353, 1382, 1476
Bme18I GGWCC 2 cut(s) 326, 1447
BmeT110I CYCGRG 1 cut(s) 1086
BmgT120I GGNCC 3 cut(s) 149, 326, 1447
BmiI GGNNCC 4 cut(s) 197, 931, 1237, 1481
BmrFI CCNGG 4 cut(s) 623, 1353, 1382, 1476
BmsI GCATC 3 cut(s) 514, 738, 1117
BpmI CTGGAG 2 cut(s) 1374, 1403
Bpu10I CCTNAGC 1 cut(s) 1092
BpuEI CTTGAG 1 cut(s) 1442
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 1010
BsaJI CCNNGG 5 cut(s) 444, 622, 1351, 1371, 1475
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 3 cut(s) 544, 571, 622
Bse1I ACTGG 1 cut(s) 1237
Bse3DI GCAATG 2 cut(s) 314, 1254
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 4 cut(s) 623, 1353, 1382, 1476
BseDI CCNNGG 5 cut(s) 444, 622, 1351, 1371, 1475
BseGI GGATG 3 cut(s) 440, 837, 1063
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 3 cut(s) 544, 571, 622
BseMI GCAATG 2 cut(s) 314, 1254
BseMII CTCAG 2 cut(s) 1083, 1403
BseNI ACTGG 1 cut(s) 1237
BseSI GKGCMC 1 cut(s) 1482
BseXI GCAGC 4 cut(s) 10, 220, 269, 897
BsgI GTGCAG 2 cut(s) 333, 1182
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 5 cut(s) 106, 151, 957, 1011, 1287
BshNI GGYRCC 3 cut(s) 929, 1235, 1479
BsiHKAI GWGCWC 2 cut(s) 1087, 1158
BsiHKCI CYCGRG 1 cut(s) 1086
BslI CCNNNNNNNGG 3 cut(s) 544, 571, 622
BsmAI GTCTC 2 cut(s) 417, 1010
BsnI GGCC 5 cut(s) 106, 151, 957, 1011, 1287
Bso31I GGTCTC 1 cut(s) 1010
BsoBI CYCGRG 1 cut(s) 1086
Bsp1286I GDGCHC 3 cut(s) 1087, 1158, 1482
Bsp143I GATC 6 cut(s) 119, 250, 491, 652, 1293, 1377
BspACI CCGC 4 cut(s) 152, 435, 1193, 1484
BspANI GGCC 5 cut(s) 106, 151, 957, 1011, 1287
BspCNI CTCAG 2 cut(s) 1084, 1404
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 4 cut(s) 197, 931, 1237, 1481
BspPI GGATC 2 cut(s) 499, 1372
BspT107I GGYRCC 3 cut(s) 929, 1235, 1479
BspTNI GGTCTC 1 cut(s) 1010
BsrDI GCAATG 2 cut(s) 314, 1254
BsrI ACTGG 1 cut(s) 1237
BssECI CCNNGG 5 cut(s) 444, 622, 1351, 1371, 1475
BssMI GATC 6 cut(s) 119, 250, 491, 652, 1293, 1377
BssSI CACGAG 1 cut(s) 1080
BssT1I CCWWGG 2 cut(s) 444, 1371
Bst2BI CACGAG 1 cut(s) 1080
Bst2UI CCWGG 4 cut(s) 623, 1353, 1382, 1476
Bst4CI ACNGT 3 cut(s) 42, 326, 1266
Bst6I CTCTTC 2 cut(s) 185, 1307
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 5 cut(s) 206, 1009, 1046, 1077, 1197
BstDEI CTNAG 3 cut(s) 593, 1092, 1412
BstENI CCTNNNNNAGG 1 cut(s) 542
BstF5I GGATG 3 cut(s) 440, 837, 1063
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 6 cut(s) 122, 253, 494, 655, 1296, 1380
BstMAI GTCTC 2 cut(s) 417, 1010
BstMBI GATC 6 cut(s) 119, 250, 491, 652, 1293, 1377
BstMWI GCNNNNNNNGC 5 cut(s) 14, 23, 103, 133, 916
BstNI CCWGG 4 cut(s) 623, 1353, 1382, 1476
BstSCI CCNGG 4 cut(s) 621, 1351, 1380, 1474
BstSFI CTRYAG 1 cut(s) 1245
BstSLI GKGCMC 1 cut(s) 1482
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 10, 220, 269, 897
BsuRI GGCC 5 cut(s) 106, 151, 957, 1011, 1287
BtsCI GGATG 3 cut(s) 440, 837, 1063
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 2 cut(s) 854, 1020
Cac8I GCNNGC 5 cut(s) 206, 1009, 1046, 1077, 1197
CaiI CAGNNNCTG 2 cut(s) 23, 263
Cfr13I GGNCC 3 cut(s) 149, 326, 1447
CseI GACGC 3 cut(s) 143, 471, 1172
Csp6I GTAC 4 cut(s) 38, 1097, 1236, 1433
CspCI CAANNNNNGTGG 2 cut(s) 1009, 1044
CviAII CATG 4 cut(s) 254, 556, 1013, 1038
CviQI GTAC 4 cut(s) 38, 1097, 1236, 1433
DdeI CTNAG 3 cut(s) 593, 1092, 1412
DpnI GATC 6 cut(s) 121, 252, 493, 654, 1295, 1379
DpnII GATC 6 cut(s) 119, 250, 491, 652, 1293, 1377
EaeI YGGCCR 1 cut(s) 1009
Eam1104I CTCTTC 2 cut(s) 185, 1307
EarI CTCTTC 2 cut(s) 185, 1307
Eco130I CCWWGG 2 cut(s) 444, 1371
Eco147I AGGCCT 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 1010
Eco47I GGWCC 2 cut(s) 326, 1447
Eco88I CYCGRG 1 cut(s) 1086
EcoNI CCTNNNNNAGG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 1447
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 4 cut(s) 621, 1351, 1380, 1474
EcoT14I CCWWGG 2 cut(s) 444, 1371
ErhI CCWWGG 2 cut(s) 444, 1371
FaeI CATG 4 cut(s) 257, 559, 1016, 1041
FatI CATG 4 cut(s) 253, 555, 1012, 1037
FauI CCCGC 1 cut(s) 1200
FauNDI CATATG 1 cut(s) 895
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 5 cut(s) 24, 152, 209, 258, 911
FokI GGATG 3 cut(s) 427, 844, 1050
Fsp4HI GCNGC 5 cut(s) 24, 152, 209, 258, 911
FspBI CTAG 4 cut(s) 416, 1055, 1124, 1451
GluI GCNGC 5 cut(s) 24, 152, 209, 258, 911
GsuI CTGGAG 2 cut(s) 1374, 1403
HaeIII GGCC 5 cut(s) 106, 151, 957, 1011, 1287
HgaI GACGC 3 cut(s) 143, 471, 1172
Hin1II CATG 4 cut(s) 257, 559, 1016, 1041
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 5 cut(s) 575, 1168, 1325, 1347, 1454
HphI GGTGA 7 cut(s) 400, 559, 956, 1124, 1177, 1262, 1387
Hpy166II GTNNAC 2 cut(s) 89, 649
Hpy188I TCNGA 2 cut(s) 807, 1330
Hpy188III TCNNGA 6 cut(s) 527, 923, 1067, 1124, 1172, 1212
Hpy8I GTNNAC 2 cut(s) 89, 649
HpyAV CCTTC 6 cut(s) 441, 544, 859, 881, 920, 1277
HpyCH4III ACNGT 3 cut(s) 42, 326, 1266
HpyCH4IV ACGT 1 cut(s) 880
HpyCH4V TGCA 9 cut(s) 26, 257, 350, 751, 913, 990, 1130, 1199, 1259
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 23, 103, 133, 916
HpyF3I CTNAG 3 cut(s) 593, 1092, 1412
HpySE526I ACGT 1 cut(s) 880
Hsp92II CATG 4 cut(s) 257, 559, 1016, 1041
KpnI GGTACC 1 cut(s) 1239
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 6 cut(s) 119, 250, 491, 652, 1293, 1377
LmnI GCTCC 5 cut(s) 201, 502, 529, 1041, 1384
Lsp1109I GCAGC 4 cut(s) 10, 220, 269, 897
LweI GCATC 3 cut(s) 514, 738, 1117
MaeI CTAG 4 cut(s) 416, 1055, 1124, 1451
MaeII ACGT 1 cut(s) 880
MaeIII GTNAC 5 cut(s) 456, 944, 1030, 1050, 1250
MalI GATC 6 cut(s) 121, 252, 493, 654, 1295, 1379
MboI GATC 6 cut(s) 119, 250, 491, 652, 1293, 1377
MboII GAAGA 4 cut(s) 202, 283, 757, 1324
MhlI GDGCHC 3 cut(s) 1087, 1158, 1482
MlsI TGGCCA 1 cut(s) 1011
MluCI AATT 6 cut(s) 141, 396, 516, 706, 738, 1227
MluNI TGGCCA 1 cut(s) 1011
MmeI TCCRAC 2 cut(s) 816, 830
Mox20I TGGCCA 1 cut(s) 1011
MroXI GAANNNNTTC 2 cut(s) 290, 430
MscI TGGCCA 1 cut(s) 1011
MseI TTAA 3 cut(s) 950, 1302, 1338
MslI CAYNNNNRTG 2 cut(s) 82, 1163
Msp20I TGGCCA 1 cut(s) 1011
MspR9I CCNGG 4 cut(s) 623, 1353, 1382, 1476
MvaI CCWGG 4 cut(s) 623, 1353, 1382, 1476
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 5 cut(s) 14, 23, 103, 133, 916
NdeI CATATG 1 cut(s) 895
NdeII GATC 6 cut(s) 119, 250, 491, 652, 1293, 1377
NlaIII CATG 4 cut(s) 257, 559, 1016, 1041
NlaIV GGNNCC 4 cut(s) 197, 931, 1237, 1481
NmuCI GTSAC 3 cut(s) 456, 944, 1250
OliI CACNNNNGTG 1 cut(s) 1163
PaeR7I CTCGAG 1 cut(s) 1086
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 290, 430
PfeI GAWTC 5 cut(s) 575, 1168, 1325, 1347, 1454
PfoI TCCNGGA 1 cut(s) 1380
PkrI GCNGC 5 cut(s) 25, 153, 210, 259, 912
PpuMI RGGWCCY 1 cut(s) 1447
Psp5II RGGWCCY 1 cut(s) 1447
Psp6I CCWGG 4 cut(s) 621, 1351, 1380, 1474
PspGI CCWGG 4 cut(s) 621, 1351, 1380, 1474
PspN4I GGNNCC 4 cut(s) 197, 931, 1237, 1481
PspPI GGNCC 3 cut(s) 149, 326, 1447
PspPPI RGGWCCY 1 cut(s) 1447
PspXI VCTCGAGB 1 cut(s) 1086
PsrI GAACNNNNNNTAC 2 cut(s) 874, 906
PstNI CAGNNNCTG 2 cut(s) 23, 263
RsaI GTAC 4 cut(s) 39, 1098, 1237, 1434
RsaNI GTAC 4 cut(s) 38, 1097, 1236, 1433
RseI CAYNNNNRTG 2 cut(s) 82, 1163
SaqAI TTAA 3 cut(s) 950, 1302, 1338
SatI GCNGC 5 cut(s) 24, 152, 209, 258, 911
Sau3AI GATC 6 cut(s) 119, 250, 491, 652, 1293, 1377
Sau96I GGNCC 3 cut(s) 149, 326, 1447
ScaI AGTACT 1 cut(s) 39
ScrFI CCNGG 4 cut(s) 623, 1353, 1382, 1476
SduI GDGCHC 3 cut(s) 1087, 1158, 1482
SfaNI GCATC 3 cut(s) 514, 738, 1117
SfcI CTRYAG 1 cut(s) 1245
Sfr274I CTCGAG 1 cut(s) 1086
SinI GGWCC 2 cut(s) 326, 1447
SlaI CTCGAG 1 cut(s) 1086
SmiMI CAYNNNNRTG 2 cut(s) 82, 1163
SmlI CTYRAG 2 cut(s) 1086, 1421
SmoI CTYRAG 2 cut(s) 1086, 1421
Sse9I AATT 6 cut(s) 141, 396, 516, 706, 738, 1227
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 4 cut(s) 152, 435, 1193, 1484
SspI AATATT 3 cut(s) 333, 729, 1279
SspMI CTAG 4 cut(s) 416, 1055, 1124, 1451
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 4 cut(s) 621, 1351, 1380, 1474
StyI CCWWGG 2 cut(s) 444, 1371
TaaI ACNGT 3 cut(s) 42, 326, 1266
TaiI ACGT 1 cut(s) 883
TaqI TCGA 3 cut(s) 145, 1087, 1141
TasI AATT 6 cut(s) 141, 396, 516, 706, 738, 1227
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 5 cut(s) 575, 1168, 1325, 1347, 1454
Tru1I TTAA 3 cut(s) 950, 1302, 1338
Tru9I TTAA 3 cut(s) 950, 1302, 1338
TscAI CASTG 2 cut(s) 861, 1027
TseFI GTSAC 3 cut(s) 456, 944, 1250
TseI GCWGC 4 cut(s) 23, 208, 257, 910
Tsp45I GTSAC 3 cut(s) 456, 944, 1250
TspGWI ACGGA 1 cut(s) 504
TspRI CASTG 2 cut(s) 861, 1027
VpaK11BI GGWCC 2 cut(s) 326, 1447
XagI CCTNNNNNAGG 1 cut(s) 542
XapI RAATTY 1 cut(s) 141
XbaI TCTAGA 1 cut(s) 1123
XcmI CCANNNNNNNNNTGG 1 cut(s) 1378
XhoI CTCGAG 1 cut(s) 1086
XmnI GAANNNNTTC 2 cut(s) 290, 430
XspI CTAG 4 cut(s) 416, 1055, 1124, 1451
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.