Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Reverse (-)

31140658 .. 31153003

Gene Structure 12346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAAGTGGTGAAGGAAATTAGCTTGTGTAAGTCTCTAGTCTTGGGAAAACCTTCCGCAACATCCAAGGTTCTTGGGTCACTATTGGGAGAGGGCCTTTCAGCGTCGAACGGATCAATGTGGGAGCATCAAAGGAAAATTATCGCTCCTGAACTATACCTTGATAAGGTGAAGGGCATGATGAACCTGTTAGTGGATTCTACAACCTCAATGCTAAGAATTTGGGAAAATGAAGTCCACAGCCAGGGAGAACTTGCTGATATTAGAGTTGATGATCATTTGAGAAACTTATCAGCAGATGTCATCTCAAAAGCTTGTTTTCATAGCAATTATCATCAAGGAAAAGAAATATTCTCAAAAATTAGGAAGCTGCAAGAAGTTTTGGGAAAGGGATTGATGGGGATAGAAGCCTTGACCAGATGGTTTCCGACAACAGAAAATAGAAAGATATGGATGTTGGAAAAGGAAACTCAATCACTGATATTGAAGGTGGTAAAACAACGTAATGAAGGTTCATATGAGAAAGATTTGCTGCAAATGCTTCTTGAAGGTGCCAAAAGTTCTGGTGACTTAAATGGCCTATCACACAATAAGTTTATTGTTGATAACTGCAAGACTATATTCTTTGCTGGCCATGAGACCACTGCCCTTGTAACATCATGGAGCTTGCTGTTACTAGCTCTCCATCCAGATTGGCAAGCTCGTGCTCGAGCTGAGGTACTTGAAATCTGTGGTGATAAGCCTCTAGATGCGGATATGCTTCGACAAATGAAAGTGCTCACAATGGTGATTCAGGAGGTATTGCGTCTTTACCCGCCTGCACTCTTTCTATCAAGAGAGAACCCTGATCTGTGGGGATCTGATGCTCATAAGTTCAACCCAGAAAGATTTGCCAATGGAATTGTCAAGGCTTGCAAGTCACCACAGGCCTACATGCCATTCGGAGCAGGTTCTCGTATATGTGTTGGTCAACACTTGGCTATGATAGAACTTAAGGTGTTTCTTTCTATGATTCTCTCAAAGTTCTGCTTCTCCCTCTCATCAGCATACCAGCATTCTCCTGCATATAACATTATTCTGGAGCCTGAATATGGTATTATTCTACAAATGCGAAGAGCGTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

375

Amino Acids

42.21

Weight (kDa)

8.36

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	28 - 280	3.4e-39	Cytochrome P450
p450	PF00067	280 - 357	5.5e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	938
AccB1I	GGYRCC	1 cut(s)	551
AciI	CCGC	3 cut(s)	57, 752, 815
AclWI	GGATC	2 cut(s)	121, 865
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	4 cut(s)	166, 193, 244, 1091
AflII	CTTAAG	1 cut(s)	992
AgsI	TTSAA	4 cut(s)	487, 548, 725, 877
AjnI	CCWGG	1 cut(s)	243
AleI	CACNNNNGTG	1 cut(s)	785
AluBI	AGCT	7 cut(s)	24, 314, 370, 666, 680, 701, 713
AluI	AGCT	7 cut(s)	24, 314, 370, 666, 680, 701, 713
Alw21I	GWGCWC	2 cut(s)	709, 780
Alw26I	GTCTC	2 cut(s)	39, 632
AlwI	GGATC	2 cut(s)	121, 865
Ama87I	CYCGRG	1 cut(s)	708
AoxI	GGCC	4 cut(s)	94, 577, 631, 927
ApeKI	GCWGC	2 cut(s)	370, 532
ApoI	RAATTY	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	6 cut(s)	22, 181, 578, 746, 799, 912
AvaI	CYCGRG	1 cut(s)	708
BalI	TGGCCA	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	551
BauI	CACGAG	1 cut(s)	702
Bbv12I	GWGCWC	2 cut(s)	709, 780
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	357, 519
BccI	CCATC	3 cut(s)	391, 414, 693
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	39, 632
BfaI	CTAG	3 cut(s)	38, 677, 746
BfrI	CTTAAG	1 cut(s)	992
BfuAI	ACCTGC	1 cut(s)	938
BisI	GCNGC	2 cut(s)	371, 533
BlsI	GCNGC	2 cut(s)	372, 534
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	553, 1083
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	3 cut(s)	136, 739, 853
BpmI	CTGGAG	1 cut(s)	1100
Bpu10I	CCTNAGC	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	2 cut(s)	66, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 193, 244, 1091
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	66, 244
BseGI	GGATG	3 cut(s)	62, 459, 685
BseLI	CCNNNNNNNGG	4 cut(s)	166, 193, 244, 1091
BseMII	CTCAG	1 cut(s)	705
BseXI	GCAGC	2 cut(s)	357, 519
BsgI	GTGCAG	1 cut(s)	804
BshFI	GGCC	4 cut(s)	96, 579, 633, 929
BshNI	GGYRCC	1 cut(s)	551
BsiHKAI	GWGCWC	2 cut(s)	709, 780
BsiHKCI	CYCGRG	1 cut(s)	708
BslI	CCNNNNNNNGG	4 cut(s)	166, 193, 244, 1091
BsmAI	GTCTC	2 cut(s)	39, 632
BsmI	GAATGC	1 cut(s)	1054
BsnI	GGCC	4 cut(s)	96, 579, 633, 929
Bso31I	GGTCTC	1 cut(s)	632
BsoBI	CYCGRG	1 cut(s)	708
Bsp1286I	GDGCHC	2 cut(s)	709, 780
Bsp143I	GATC	4 cut(s)	113, 274, 847, 857
BspACI	CCGC	3 cut(s)	57, 752, 815
BspANI	GGCC	4 cut(s)	96, 579, 633, 929
BspCNI	CTCAG	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	553, 1083
BspMI	ACCTGC	1 cut(s)	938
BspPI	GGATC	2 cut(s)	121, 865
BspQI	GCTCTTC	1 cut(s)	1108
BspT107I	GGYRCC	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	632
BssECI	CCNNGG	2 cut(s)	66, 244
BssMI	GATC	4 cut(s)	113, 274, 847, 857
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	1108
BstAFI	CTTAAG	1 cut(s)	992
BstC8I	GCNNGC	5 cut(s)	631, 668, 699, 819, 913
BstDEI	CTNAG	2 cut(s)	215, 714
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	62, 459, 685
BstKTI	GATC	4 cut(s)	116, 277, 850, 860
BstMAI	GTCTC	2 cut(s)	39, 632
BstMBI	GATC	4 cut(s)	113, 274, 847, 857
BstMWI	GCNNNNNNNGC	1 cut(s)	538
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	937
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	357, 519
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BsuRI	GGCC	4 cut(s)	96, 579, 633, 929
BtsCI	GGATG	3 cut(s)	62, 459, 685
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	476, 642
BveI	ACCTGC	1 cut(s)	938
Cac8I	GCNNGC	5 cut(s)	631, 668, 699, 819, 913
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	3 cut(s)	93, 794, 1107
Csp6I	GTAC	1 cut(s)	719
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	4 cut(s)	178, 635, 660, 934
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	2 cut(s)	215, 714
DpnI	GATC	4 cut(s)	115, 276, 849, 859
DpnII	GATC	4 cut(s)	113, 274, 847, 857
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	1108
EarI	CTCTTC	1 cut(s)	1108
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	929
Eco31I	GGTCTC	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	708
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	181, 638, 663, 937
FalI	AAGNNNNNCTT	2 cut(s)	1013, 1045
FatI	CATG	4 cut(s)	177, 634, 659, 933
FauI	CCCGC	1 cut(s)	822
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	371, 533
FokI	GGATG	3 cut(s)	49, 466, 672
Fsp4HI	GCNGC	2 cut(s)	371, 533
FspBI	CTAG	3 cut(s)	38, 677, 746
GluI	GCNGC	2 cut(s)	371, 533
GsuI	CTGGAG	1 cut(s)	1100
HaeIII	GGCC	4 cut(s)	96, 579, 633, 929
HgaI	GACGC	3 cut(s)	93, 794, 1107
Hin1II	CATG	4 cut(s)	181, 638, 663, 937
HincII	GTYRAC	1 cut(s)	971
HindII	GTYRAC	1 cut(s)	971
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	3 cut(s)	197, 790, 1012
HphI	GGTGA	6 cut(s)	22, 181, 578, 746, 799, 912
Hpy166II	GTNNAC	2 cut(s)	238, 971
Hpy188I	TCNGA	3 cut(s)	429, 862, 944
Hpy188III	TCNNGA	7 cut(s)	149, 545, 689, 746, 794, 834, 1079
Hpy8I	GTNNAC	2 cut(s)	238, 971
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	6 cut(s)	7, 63, 166, 481, 503, 542
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	6 cut(s)	373, 535, 612, 821, 915, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	538
HpyF3I	CTNAG	2 cut(s)	215, 714
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	4 cut(s)	181, 638, 663, 937
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	113, 274, 847, 857
LguI	GCTCTTC	1 cut(s)	1108
LmnI	GCTCC	5 cut(s)	124, 151, 663, 944, 1081
Lsp1109I	GCAGC	2 cut(s)	357, 519
LweI	GCATC	3 cut(s)	136, 739, 853
MaeI	CTAG	3 cut(s)	38, 677, 746
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	5 cut(s)	78, 566, 652, 672, 918
MalI	GATC	4 cut(s)	115, 276, 849, 859
MboI	GATC	4 cut(s)	113, 274, 847, 857
MboII	GAAGA	1 cut(s)	1125
MflI	RGATCY	1 cut(s)	857
MhlI	GDGCHC	2 cut(s)	709, 780
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	6 cut(s)	18, 138, 219, 328, 360, 900
MluNI	TGGCCA	1 cut(s)	633
MmeI	TCCRAC	2 cut(s)	438, 452
MnlI	CCTC	6 cut(s)	85, 217, 709, 753, 790, 1046
Mox20I	TGGCCA	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	52
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	2 cut(s)	572, 993
MslI	CAYNNNNRTG	1 cut(s)	785
Msp20I	TGGCCA	1 cut(s)	633
MspCI	CTTAAG	1 cut(s)	992
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	1054
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	538
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	4 cut(s)	113, 274, 847, 857
NlaIII	CATG	4 cut(s)	181, 638, 663, 937
NlaIV	GGNNCC	2 cut(s)	553, 1083
NmuCI	GTSAC	3 cut(s)	78, 566, 918
NspI	RCATGY	1 cut(s)	937
OliI	CACNNNNGTG	1 cut(s)	785
PaeR7I	CTCGAG	1 cut(s)	708
PceI	AGGCCT	1 cut(s)	929
PciSI	GCTCTTC	1 cut(s)	1108
PctI	GAATGC	1 cut(s)	1054
PdmI	GAANNNNTTC	1 cut(s)	52
PfeI	GAWTC	3 cut(s)	197, 790, 1012
PkrI	GCNGC	2 cut(s)	372, 534
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	553, 1083
PspPI	GGNCC	1 cut(s)	94
PspXI	VCTCGAGB	1 cut(s)	708
PsrI	GAACNNNNNNTAC	2 cut(s)	496, 528
PsuI	RGATCY	1 cut(s)	857
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
RseI	CAYNNNNRTG	1 cut(s)	785
SapI	GCTCTTC	1 cut(s)	1108
SaqAI	TTAA	2 cut(s)	572, 993
SatI	GCNGC	2 cut(s)	371, 533
Sau3AI	GATC	4 cut(s)	113, 274, 847, 857
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	709, 780
SfaNI	GCATC	3 cut(s)	136, 739, 853
Sfr274I	CTCGAG	1 cut(s)	708
SlaI	CTCGAG	1 cut(s)	708
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	2 cut(s)	708, 992
SmoI	CTYRAG	2 cut(s)	708, 992
Sse9I	AATT	6 cut(s)	18, 138, 219, 328, 360, 900
SseBI	AGGCCT	1 cut(s)	929
SsiI	CCGC	3 cut(s)	57, 752, 815
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	3 cut(s)	38, 677, 746
StuI	AGGCCT	1 cut(s)	929
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	3 cut(s)	107, 709, 763
TasI	AATT	6 cut(s)	18, 138, 219, 328, 360, 900
TfiI	GAWTC	3 cut(s)	197, 790, 1012
Tru1I	TTAA	2 cut(s)	572, 993
Tru9I	TTAA	2 cut(s)	572, 993
TscAI	CASTG	2 cut(s)	483, 649
TseFI	GTSAC	3 cut(s)	78, 566, 918
TseI	GCWGC	2 cut(s)	370, 532
Tsp45I	GTSAC	3 cut(s)	78, 566, 918
TspDTI	ATGAA	6 cut(s)	197, 246, 311, 504, 522, 785
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	483, 649
Vha464I	CTTAAG	1 cut(s)	992
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	1 cut(s)	219
XbaI	TCTAGA	1 cut(s)	745
XceI	RCATGY	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	708
XmnI	GAANNNNTTC	1 cut(s)	52
XspI	CTAG	3 cut(s)	38, 677, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.