Rh1CG178600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001937
Physical Location & Seq
Forward (+)
39477981 .. 39480241
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG178600.1

Sequence Viewer

Length: 588 bp
ATGGAAGCAGAGTTAGCAGTAGCTGCAAAGATGGTAGTACTGTCAGTATTGGTGTGTGGGCTTTTGTTCTTGGTTTCATATTTGTGTGAACTTCTGCTGTTGAGGCCTAAATCCATAAGATCAAAGCTGGAAAAGCAAGGAATTCGAGGGCCGCGTCCTACCTTTCTATTGGGAAACCTCCCTGAACAGAAGAGGCTCCAAAGCAAGCAGCAGGGTCAGTCAATAGGAACAAGGACTGATGATGATGATGATCATGCAGCTTCTGTTTCTCATCAATGGTATTTGAAAATCTTCCCCCACATAGAGCAATGGAGAAATGAATACGGTCCAATATTTTTGTGTTCATCTGCACACATACAACATTTAGTAATAACAGATATGGAAGTGGTGAAAGAAATTAGCTTGTGTAAGTCTCTAGTCTTGGGAAAACCTTCCGCAACATCCAAGGTTCTTGGGTCACTATTGGGAGAGGGCATTTTAGCGTCAAACGGATCAATGTGGGAGCATCAAAGGAAAATTATCGCTCCTGAACTATACCTTGATAAGGTGAAGGTATACATTAAAACAATTCTTTCCTTTAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

195

Amino Acids

21.88

Weight (kDa)

9.02

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 99 - 183 1.2e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 555
AccII CGCG 1 cut(s) 154
AciI CCGC 2 cut(s) 152, 435
AclWI GGATC 1 cut(s) 499
AcsI RAATTY 2 cut(s) 141, 582
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 4 cut(s) 23, 127, 260, 402
AluI AGCT 4 cut(s) 23, 127, 260, 402
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 499
AlwNI CAGNNNCTG 2 cut(s) 23, 263
AoxI GGCC 2 cut(s) 104, 149
ApeKI GCWGC 3 cut(s) 23, 208, 257
ApoI RAATTY 2 cut(s) 141, 582
Asp700I GAANNNNTTC 2 cut(s) 290, 430
AspS9I GGNCC 2 cut(s) 149, 326
AsuHPI GGTGA 2 cut(s) 400, 559
AvaII GGWCC 1 cut(s) 326
BbvI GCAGC 3 cut(s) 10, 220, 269
BccI CCATC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 1 cut(s) 416
BisI GCNGC 4 cut(s) 24, 152, 209, 258
BlsI GCNGC 4 cut(s) 25, 153, 210, 259
BmcAI AGTACT 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 149, 326
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 1 cut(s) 440
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMI GCAATG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 10, 220, 269
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 106, 151
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 2 cut(s) 106, 151
Bsp143I GATC 3 cut(s) 119, 250, 491
BspACI CCGC 2 cut(s) 152, 435
BspANI GGCC 2 cut(s) 106, 151
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 3 cut(s) 119, 250, 491
BssNAI GTATAC 1 cut(s) 556
BssT1I CCWWGG 1 cut(s) 444
Bst1107I GTATAC 1 cut(s) 556
Bst4CI ACNGT 2 cut(s) 42, 326
Bst6I CTCTTC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 542
BstF5I GGATG 1 cut(s) 440
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 3 cut(s) 122, 253, 494
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 3 cut(s) 119, 250, 491
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 10, 220, 269
BstZ17I GTATAC 1 cut(s) 556
BsuRI GGCC 2 cut(s) 106, 151
BtsCI GGATG 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 206
CaiI CAGNNNCTG 2 cut(s) 23, 263
Cfr13I GGNCC 2 cut(s) 149, 326
CseI GACGC 2 cut(s) 143, 471
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 254
CviJI RGCY 8 cut(s) 23, 61, 106, 127, 151, 196, 260, 402
CviKI_1 RGCY 8 cut(s) 23, 61, 106, 127, 151, 196, 260, 402
CviQI GTAC 1 cut(s) 38
DpnI GATC 3 cut(s) 121, 252, 493
DpnII GATC 3 cut(s) 119, 250, 491
DraI TTTAAA 1 cut(s) 580
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 444
Eco147I AGGCCT 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 326
EcoNI CCTNNNNNAGG 1 cut(s) 542
EcoRI GAATTC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 1 cut(s) 257
FaiI YATR 8 cut(s) 79, 116, 255, 302, 356, 380, 535, 556
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 4 cut(s) 24, 152, 209, 258
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 4 cut(s) 24, 152, 209, 258
FspBI CTAG 1 cut(s) 416
GluI GCNGC 4 cut(s) 24, 152, 209, 258
HaeIII GGCC 2 cut(s) 106, 151
HgaI GACGC 2 cut(s) 143, 471
Hin1II CATG 1 cut(s) 257
HphI GGTGA 2 cut(s) 400, 559
Hpy166II GTNNAC 2 cut(s) 89, 556
Hpy188III TCNNGA 1 cut(s) 527
Hpy8I GTNNAC 2 cut(s) 89, 556
HpyAV CCTTC 2 cut(s) 441, 544
HpyCH4III ACNGT 2 cut(s) 42, 326
HpyCH4V TGCA 3 cut(s) 26, 257, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
Hsp92II CATG 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 119, 250, 491
LmnI GCTCC 3 cut(s) 201, 502, 529
LpnPI CCDG 4 cut(s) 113, 195, 197, 540
Lsp1109I GCAGC 3 cut(s) 10, 220, 269
LweI GCATC 1 cut(s) 514
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 456
MalI GATC 3 cut(s) 121, 252, 493
MboI GATC 3 cut(s) 119, 250, 491
MboII GAAGA 2 cut(s) 202, 283
MluCI AATT 5 cut(s) 141, 396, 516, 567, 582
MnlI CCTC 5 cut(s) 96, 140, 186, 188, 463
MroXI GAANNNNTTC 2 cut(s) 290, 430
MseI TTAA 2 cut(s) 561, 579
MslI CAYNNNNRTG 1 cut(s) 82
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
NdeII GATC 3 cut(s) 119, 250, 491
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 456
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 290, 430
PkrI GCNGC 4 cut(s) 25, 153, 210, 259
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 2 cut(s) 149, 326
PstNI CAGNNNCTG 2 cut(s) 23, 263
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 82
SaqAI TTAA 2 cut(s) 561, 579
SatI GCNGC 4 cut(s) 24, 152, 209, 258
Sau3AI GATC 3 cut(s) 119, 250, 491
Sau96I GGNCC 2 cut(s) 149, 326
ScaI AGTACT 1 cut(s) 39
SfaNI GCATC 1 cut(s) 514
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 5 cut(s) 141, 396, 516, 567, 582
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 2 cut(s) 152, 435
SspI AATATT 1 cut(s) 333
SspMI CTAG 1 cut(s) 416
StuI AGGCCT 1 cut(s) 106
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 42, 326
TaqI TCGA 1 cut(s) 145
TasI AATT 5 cut(s) 141, 396, 516, 567, 582
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 561, 579
Tru9I TTAA 2 cut(s) 561, 579
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 3 cut(s) 23, 208, 257
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 3 cut(s) 66, 333, 333
TspGWI ACGGA 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 542
XapI RAATTY 2 cut(s) 141, 582
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 2 cut(s) 290, 430
XspI CTAG 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.