Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Forward (+)

38020901 .. 38023064

Gene Structure 2164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGAGAAGGAAGAAGGAAGAGGAGGCAAAAAACGAAAGCAGGGTTAGGAATGGCAGTGAAGATCATATTATCGGTGTTGTTGGGTGGGTTTGTACTATTTCTGTTATATCTCTATGAGGTTTTGTTGCTAAAGCCAAAGAGGCTAAGATCAAAGCTTGAAGATCAAGGGATCAAAGGGCCTTGTCCTGTATTTATGTTGGGCAATATCACAGAAATGAAGAGGATCAAAGTCAATGTGATGGAGTCGACAGCTACAGAAACAACAAATACTACTACTACTACCTCAATGAACCACCACCATTTTTCTATTGCTCATCATTGGCGTTCAACTATTTTTCCTCATCTGGTGCAATGGCAAAATGAATACGGACCAATATTTATCTATTCAACTGGAAGCATACAGCATGTACTCGTTACAGATATAGAGAGTAAAAGAAATTTGCTTGTGTACATCTTTGAGCTTAGGGAAGCCTTCTTATCTAAGGACTGGAGGCCACCGTTAGGCCAAGGCATTCTAGCTTCAAATGGCTCAGTTTGGTCTCACCAGAGGAAGATTATTGCTCCTCAATTCTATTTTGATAAGGTTAAGGCTTGGTTTGTTTTAAGTCTGAGGTGCAACACTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

209

Amino Acids

24.09

Weight (kDa)

10.08

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	101 - 195	2.6e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	179, 233
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	3 cut(s)	96, 411, 452
AfiI	CCNNNNNNNGG	1 cut(s)	503
AgsI	TTSAA	4 cut(s)	161, 330, 390, 525
AluBI	AGCT	4 cut(s)	157, 254, 463, 521
AluI	AGCT	4 cut(s)	157, 254, 463, 521
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	179, 233
AoxI	GGCC	3 cut(s)	179, 494, 505
ApoI	RAATTY	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	179, 371
AsuHPI	GGTGA	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	371
BccI	CCATC	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	179, 371
BpmI	CTGGAG	1 cut(s)	511
Bpu10I	CCTNAGC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	2 cut(s)	397, 494
Bse3DI	GCAATG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	546, 602
BseNI	ACTGG	2 cut(s)	397, 494
BseRI	GAGGAG	2 cut(s)	37, 555
BshFI	GGCC	3 cut(s)	181, 496, 507
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	181, 496, 507
Bso31I	GGTCTC	1 cut(s)	546
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	5 cut(s)	63, 149, 163, 171, 225
BspANI	GGCC	3 cut(s)	181, 496, 507
BspCNI	CTCAG	2 cut(s)	545, 603
BspPI	GGATC	2 cut(s)	179, 233
BspTNI	GGTCTC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	397, 494
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	5 cut(s)	63, 149, 163, 171, 225
BssT1I	CCWWGG	1 cut(s)	508
Bst4CI	ACNGT	1 cut(s)	501
Bst6I	CTCTTC	2 cut(s)	14, 215
BstAUI	TGTACA	1 cut(s)	450
BstDEI	CTNAG	5 cut(s)	146, 464, 483, 532, 611
BstKTI	GATC	5 cut(s)	66, 152, 166, 174, 228
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	5 cut(s)	63, 149, 163, 171, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	181, 496, 507
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	179, 371
Csp6I	GTAC	3 cut(s)	95, 410, 451
CviAII	CATG	1 cut(s)	407
CviQI	GTAC	3 cut(s)	95, 410, 451
DdeI	CTNAG	5 cut(s)	146, 464, 483, 532, 611
DpnI	GATC	5 cut(s)	65, 151, 165, 173, 227
DpnII	GATC	5 cut(s)	63, 149, 163, 171, 225
Eam1104I	CTCTTC	2 cut(s)	14, 215
EarI	CTCTTC	2 cut(s)	14, 215
Eco130I	CCWWGG	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	1 cut(s)	410
FaiI	YATR	7 cut(s)	68, 109, 117, 197, 401, 408, 425
FatI	CATG	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	248
FspBI	CTAG	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	511
HaeIII	GGCC	3 cut(s)	181, 496, 507
Hin1II	CATG	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	245
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	2 cut(s)	249, 451
Hpy188I	TCNGA	1 cut(s)	612
Hpy8I	GTNNAC	2 cut(s)	249, 451
HpyAV	CCTTC	2 cut(s)	9, 484
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4V	TGCA	2 cut(s)	352, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	5 cut(s)	146, 464, 483, 532, 611
Hsp92II	CATG	1 cut(s)	410
Kzo9I	GATC	5 cut(s)	63, 149, 163, 171, 225
LmnI	GCTCC	1 cut(s)	568
LpnPI	CCDG	6 cut(s)	27, 201, 332, 378, 475, 560
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	5 cut(s)	65, 151, 165, 173, 227
MboI	GATC	5 cut(s)	63, 149, 163, 171, 225
MboII	GAAGA	6 cut(s)	24, 31, 73, 173, 232, 565
MluCI	AATT	2 cut(s)	439, 569
MlyI	GAGTC	1 cut(s)	254
MseI	TTAA	2 cut(s)	588, 605
MslI	CAYNNNNRTG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	5 cut(s)	63, 149, 163, 171, 225
NlaIII	CATG	1 cut(s)	410
NspI	RCATGY	1 cut(s)	410
PctI	GAATGC	1 cut(s)	513
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	179, 371
RsaI	GTAC	3 cut(s)	96, 411, 452
RsaNI	GTAC	3 cut(s)	95, 410, 451
RseI	CAYNNNNRTG	1 cut(s)	215
SalI	GTCGAC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	588, 605
Sau3AI	GATC	5 cut(s)	63, 149, 163, 171, 225
Sau96I	GGNCC	2 cut(s)	179, 371
SchI	GAGTC	1 cut(s)	254
SetI	ASST	8 cut(s)	123, 159, 256, 287, 465, 523, 588, 617
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	439, 569
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	518
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	439, 569
TatI	WGTACW	3 cut(s)	94, 409, 450
Tru1I	TTAA	2 cut(s)	588, 605
Tru9I	TTAA	2 cut(s)	588, 605
TscAI	CASTG	1 cut(s)	63
TspDTI	ATGAA	3 cut(s)	233, 305, 378
TspGWI	ACGGA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.