Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Forward (+)

35542417 .. 35546944

Gene Structure 4528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGAAGCAGAGTTAGCAGTAGCTGCAAAGATGGTAGTACTGTCAGTATTGGTGTGTGGGCTTTTGTTCTTGGTTTCATATTTGTGTGAACTTCTGCTGTTGAGGCCTAAATCCATAAGATCAAAGCTGGAAAAGCAAGGAATTCGAGGGCCGCGTCCTACCTTTCTATTGGGAAACCTCCCTGAACAGAAGAGGCTCCAAAGCAAGCAGCAGGGTCAATCAATAGCAACAAGGACTGATGATGATGATGATCATCATGCAGCTTATTTTTCTCATCAATGGTATTTGAAAATCTTCCCCCAAGCCATACATGTGGATAACTTTTGGGTGACGTGGAGCCCGTGTGGCCGTCCAATATTTTTGTGTTCATCTGCACACATACAACAATTAGTAATAACAGATATGGAAGTGGTGAAGGAAATTAGCTTGTTTAAGTCTCTAGTCTTGGGAAATCCTTCTGTAACATCCAAGAACGGATCAATGTGGGAGCATCAAAGGAAAATTATCGCTCCTGAACTATACCTTGATAAGGTGAAGGGCATGATGAACCTGGTAGTCGATTCTACAACCACAATGCTAAGAACTTGGGAAAATGAAGTCCAAAGGGAGGGAGAACTTGCTGAAATTAGAGTTGATGATCATTTGAGAAACTTATCAGCAGATGTCATCTCAAAAGCTTGTTTTCATAGCAATTATCATCAAGGAAAAGAAATATTCTCAAAAATTAGGAAGCTGCAAGAAGTTTTGGGAAAGGGATTGATGGGGATAGAAGCCTTGACCAGATGGTTTCCGACAACAGAAAATATAAAGATATGGATGTTGGAAAAGGAAACTCAATCACTGATATTGAAGGTGGTAAAACAACGTAGTGAAGGTTCATATGAGAAAGATTTGCTGCAAATGCTTCTTGAAGGTGCCAAAAGTTCTGGTGATTTAAATGGCCTATCATACAATAAGTTTATTGTTGATAACTGTAAGACTATATTCTTTGCTGGCCATGAGACCACTGCCCTTGTAGCATCATGGAGCTTGCTGTTACTAGCTCTCCATCCAGATTGGCAAGCTCGTGCTCGAGCTGAGGCACTTGAAATCTGTGGTGATAAGCCTCTAGATGCTGATATGCTTCGACAAATGAAAGTGCTCACAATGGTGATTCAGGAGGTATTGCGTCTTTACCCGCCTGTACTCTTTGTAGCAAGAGAGGTATTTGAAACTATCAAATTTAAAAACATAACAATTCCAAAGGGGACATTTACCAATGGAATTGTCAAGGCTTGCAAGTCTCCACAGGCCTACATGCCATTCGGAGCAGGTTCTCGTATATGTGTTGGTCAACACTTGGCTATGATAGAACTTAAGGTGTTTCTTTCTATAATTCTCTCAAAGTTCTGCTTCTCCCTCTCATCAGCATACCAGCATTCTCCTGCGTATAACATTATTCTGGAGCCTGAATATGACGGAATAATAACTATCAAGTTCCGAATTAATGACTTTCAAGAGATAGAGTTCAAGACTATACACGGAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

509

Amino Acids

57.83

Weight (kDa)

8.38

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	150 - 417	3.7e-42	Cytochrome P450
p450	PF00067	425 - 472	1.6e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1301
AccB1I	GGYRCC	1 cut(s)	914
AccII	CGCG	1 cut(s)	154
AciI	CCGC	2 cut(s)	152, 1178
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	2 cut(s)	346, 994
AcsI	RAATTY	2 cut(s)	141, 1220
AfaI	GTAC	2 cut(s)	39, 1185
AfiI	CCNNNNNNNGG	2 cut(s)	529, 607
AflII	CTTAAG	1 cut(s)	1355
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	7 cut(s)	289, 850, 911, 1088, 1211, 1496, 1510
AjiI	CACGTC	1 cut(s)	333
AjnI	CCWGG	1 cut(s)	549
AleI	CACNNNNGTG	1 cut(s)	1148
Alw21I	GWGCWC	2 cut(s)	1072, 1143
Alw26I	GTCTC	3 cut(s)	441, 995, 1287
AlwI	GGATC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	1071
AoxI	GGCC	6 cut(s)	104, 149, 346, 940, 994, 1290
ApeKI	GCWGC	5 cut(s)	23, 208, 260, 733, 895
ApoI	RAATTY	2 cut(s)	141, 1220
AseI	ATTAAT	1 cut(s)	1485
Asp700I	GAANNNNTTC	2 cut(s)	293, 454
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	6 cut(s)	340, 424, 544, 941, 1109, 1162
AvaI	CYCGRG	1 cut(s)	1071
BalI	TGGCCA	1 cut(s)	996
BanI	GGYRCC	1 cut(s)	914
BanII	GRGCYC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	1065
Bbv12I	GWGCWC	2 cut(s)	1072, 1143
BbvCI	CCTCAGC	1 cut(s)	1077
BbvI	GCAGC	5 cut(s)	10, 220, 272, 720, 882
BccI	CCATC	4 cut(s)	25, 754, 777, 1056
BceAI	ACGGC	1 cut(s)	333
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	551
BclI	TGATCA	2 cut(s)	250, 637
BcoDI	GTCTC	3 cut(s)	441, 995, 1287
BfaI	CTAG	3 cut(s)	440, 1040, 1109
BfrI	CTTAAG	1 cut(s)	1355
BfuAI	ACCTGC	1 cut(s)	1301
BglI	GCCNNNNNGGC	1 cut(s)	345
BisI	GCNGC	6 cut(s)	24, 152, 209, 261, 734, 896
BlsI	GCNGC	6 cut(s)	25, 153, 210, 262, 735, 897
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	1071
BmgBI	CACGTC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	5 cut(s)	197, 338, 916, 1446, 1525
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	3 cut(s)	499, 1028, 1102
BpmI	CTGGAG	1 cut(s)	1463
Bpu10I	CCTNAGC	1 cut(s)	1077
BsaBI	GATNNNNATC	2 cut(s)	249, 252
BsaI	GGTCTC	1 cut(s)	995
BsaXI	ACNNNNNCTCC	4 cut(s)	328, 358, 1029, 1059
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 607
Bse8I	GATNNNNATC	2 cut(s)	249, 252
BseBI	CCWGG	1 cut(s)	551
BseGI	GGATG	3 cut(s)	464, 822, 1048
BseJI	GATNNNNATC	2 cut(s)	249, 252
BseLI	CCNNNNNNNGG	2 cut(s)	529, 607
BseMII	CTCAG	1 cut(s)	1068
BseXI	GCAGC	5 cut(s)	10, 220, 272, 720, 882
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	6 cut(s)	106, 151, 348, 942, 996, 1292
BshNI	GGYRCC	1 cut(s)	914
BsiHKAI	GWGCWC	2 cut(s)	1072, 1143
BsiHKCI	CYCGRG	1 cut(s)	1071
BslFI	GGGAC	1 cut(s)	1261
BslI	CCNNNNNNNGG	2 cut(s)	529, 607
BsmAI	GTCTC	3 cut(s)	441, 995, 1287
BsmFI	GGGAC	1 cut(s)	1261
BsmI	GAATGC	1 cut(s)	1417
BsnI	GGCC	6 cut(s)	106, 151, 348, 942, 996, 1292
Bso31I	GGTCTC	1 cut(s)	995
BsoBI	CYCGRG	1 cut(s)	1071
Bsp1286I	GDGCHC	3 cut(s)	341, 1072, 1143
Bsp143I	GATC	4 cut(s)	119, 250, 476, 637
BspACI	CCGC	2 cut(s)	152, 1178
BspANI	GGCC	6 cut(s)	106, 151, 348, 942, 996, 1292
BspCNI	CTCAG	1 cut(s)	1069
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	5 cut(s)	197, 338, 916, 1446, 1525
BspMI	ACCTGC	1 cut(s)	1301
BspPI	GGATC	1 cut(s)	484
BspT107I	GGYRCC	1 cut(s)	914
BspTI	CTTAAG	1 cut(s)	1355
BspTNI	GGTCTC	1 cut(s)	995
BssMI	GATC	4 cut(s)	119, 250, 476, 637
BssSI	CACGAG	1 cut(s)	1065
Bst2BI	CACGAG	1 cut(s)	1065
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	42, 974
Bst6I	CTCTTC	1 cut(s)	185
BstAFI	CTTAAG	1 cut(s)	1355
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	5 cut(s)	206, 994, 1031, 1062, 1276
BstDEI	CTNAG	2 cut(s)	578, 1077
BstENI	CCTNNNNNAGG	1 cut(s)	527
BstF5I	GGATG	3 cut(s)	464, 822, 1048
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	4 cut(s)	122, 253, 479, 640
BstMAI	GTCTC	3 cut(s)	441, 995, 1287
BstMBI	GATC	4 cut(s)	119, 250, 476, 637
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 23, 103, 133, 345, 901, 1016
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	2 cut(s)	314, 1300
BstSCI	CCNGG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	5 cut(s)	10, 220, 272, 720, 882
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuRI	GGCC	6 cut(s)	106, 151, 348, 942, 996, 1292
BtrI	CACGTC	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	464, 822, 1048
BtsI	GCAGTG	1 cut(s)	1005
BtsIMutI	CAGTG	2 cut(s)	839, 1005
BveI	ACCTGC	1 cut(s)	1301
Cac8I	GCNNGC	5 cut(s)	206, 994, 1031, 1062, 1276
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	149
CseI	GACGC	2 cut(s)	143, 1157
CsiI	ACCWGGT	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	38, 1184
CspCI	CAANNNNNGTGG	2 cut(s)	994, 1029
CviAII	CATG	6 cut(s)	257, 311, 541, 998, 1023, 1297
CviQI	GTAC	2 cut(s)	38, 1184
DdeI	CTNAG	2 cut(s)	578, 1077
DpnI	GATC	4 cut(s)	121, 252, 478, 639
DpnII	GATC	4 cut(s)	119, 250, 476, 637
DraI	TTTAAA	2 cut(s)	936, 1225
EaeI	YGGCCR	2 cut(s)	346, 994
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco147I	AGGCCT	2 cut(s)	106, 1292
Eco24I	GRGCYC	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	995
Eco88I	CYCGRG	1 cut(s)	1071
EcoNI	CCTNNNNNAGG	1 cut(s)	527
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	341
FaeI	CATG	6 cut(s)	260, 314, 544, 1001, 1026, 1300
FalI	AAGNNNNNCTT	2 cut(s)	1376, 1408
FaqI	GGGAC	1 cut(s)	1261
FatI	CATG	6 cut(s)	256, 310, 540, 997, 1022, 1296
FauI	CCCGC	1 cut(s)	1185
FauNDI	CATATG	1 cut(s)	880
FbaI	TGATCA	2 cut(s)	250, 637
Fnu4HI	GCNGC	6 cut(s)	24, 152, 209, 261, 734, 896
FokI	GGATG	3 cut(s)	451, 829, 1035
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	6 cut(s)	24, 152, 209, 261, 734, 896
FspBI	CTAG	3 cut(s)	440, 1040, 1109
GluI	GCNGC	6 cut(s)	24, 152, 209, 261, 734, 896
GsuI	CTGGAG	1 cut(s)	1463
HaeIII	GGCC	6 cut(s)	106, 151, 348, 942, 996, 1292
HgaI	GACGC	2 cut(s)	143, 1157
Hin1II	CATG	6 cut(s)	260, 314, 544, 1001, 1026, 1300
HincII	GTYRAC	1 cut(s)	1334
HindII	GTYRAC	1 cut(s)	1334
HindIII	AAGCTT	1 cut(s)	675
HinfI	GANTC	2 cut(s)	560, 1153
HphI	GGTGA	6 cut(s)	340, 424, 544, 941, 1109, 1162
Hpy166II	GTNNAC	2 cut(s)	89, 1334
Hpy188I	TCNGA	3 cut(s)	792, 1307, 1481
Hpy188III	TCNNGA	8 cut(s)	512, 908, 1052, 1109, 1157, 1442, 1496, 1510
Hpy8I	GTNNAC	2 cut(s)	89, 1334
HpyAV	CCTTC	6 cut(s)	409, 465, 529, 844, 866, 905
HpyCH4III	ACNGT	2 cut(s)	42, 974
HpyCH4IV	ACGT	2 cut(s)	332, 865
HpyCH4V	TGCA	6 cut(s)	26, 260, 374, 736, 898, 1278
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 23, 103, 133, 345, 901, 1016
HpyF3I	CTNAG	2 cut(s)	578, 1077
HpySE526I	ACGT	2 cut(s)	332, 865
Hsp92II	CATG	6 cut(s)	260, 314, 544, 1001, 1026, 1300
Ksp22I	TGATCA	2 cut(s)	250, 637
Kzo9I	GATC	4 cut(s)	119, 250, 476, 637
LmnI	GCTCC	7 cut(s)	201, 336, 487, 514, 1026, 1307, 1444
Lsp1109I	GCAGC	5 cut(s)	10, 220, 272, 720, 882
LweI	GCATC	3 cut(s)	499, 1028, 1102
MabI	ACCWGGT	1 cut(s)	549
MaeI	CTAG	3 cut(s)	440, 1040, 1109
MaeII	ACGT	2 cut(s)	332, 865
MaeIII	GTNAC	3 cut(s)	328, 460, 1035
MalI	GATC	4 cut(s)	121, 252, 478, 639
MboI	GATC	4 cut(s)	119, 250, 476, 637
MboII	GAAGA	2 cut(s)	202, 286
MhlI	GDGCHC	3 cut(s)	341, 1072, 1143
MlsI	TGGCCA	1 cut(s)	996
MluNI	TGGCCA	1 cut(s)	996
MmeI	TCCRAC	2 cut(s)	801, 815
Mox20I	TGGCCA	1 cut(s)	996
MroXI	GAANNNNTTC	2 cut(s)	293, 454
MscI	TGGCCA	1 cut(s)	996
MseI	TTAA	5 cut(s)	432, 935, 1224, 1356, 1485
MslI	CAYNNNNRTG	3 cut(s)	82, 311, 1148
Msp20I	TGGCCA	1 cut(s)	996
MspCI	CTTAAG	1 cut(s)	1355
MspR9I	CCNGG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	1417
MvaI	CCWGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	7 cut(s)	14, 23, 103, 133, 345, 901, 1016
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	4 cut(s)	119, 250, 476, 637
NlaIII	CATG	6 cut(s)	260, 314, 544, 1001, 1026, 1300
NlaIV	GGNNCC	5 cut(s)	197, 338, 916, 1446, 1525
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	2 cut(s)	314, 1300
OliI	CACNNNNGTG	1 cut(s)	1148
PaeR7I	CTCGAG	1 cut(s)	1071
PceI	AGGCCT	2 cut(s)	106, 1292
PciI	ACATGT	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	2 cut(s)	151, 338
PctI	GAATGC	1 cut(s)	1417
PdmI	GAANNNNTTC	2 cut(s)	293, 454
PfeI	GAWTC	2 cut(s)	560, 1153
PkrI	GCNGC	6 cut(s)	25, 153, 210, 262, 735, 897
PscI	ACATGT	1 cut(s)	310
PshBI	ATTAAT	1 cut(s)	1485
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	5 cut(s)	197, 338, 916, 1446, 1525
PspPI	GGNCC	1 cut(s)	149
PspXI	VCTCGAGB	1 cut(s)	1071
PsrI	GAACNNNNNNTAC	2 cut(s)	859, 891
PstNI	CAGNNNCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	39, 1185
RsaNI	GTAC	2 cut(s)	38, 1184
RseI	CAYNNNNRTG	3 cut(s)	82, 311, 1148
SaqAI	TTAA	5 cut(s)	432, 935, 1224, 1356, 1485
SatI	GCNGC	6 cut(s)	24, 152, 209, 261, 734, 896
Sau3AI	GATC	4 cut(s)	119, 250, 476, 637
Sau96I	GGNCC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	3 cut(s)	341, 1072, 1143
SexAI	ACCWGGT	1 cut(s)	549
SfaNI	GCATC	3 cut(s)	499, 1028, 1102
Sfr274I	CTCGAG	1 cut(s)	1071
SlaI	CTCGAG	1 cut(s)	1071
SmiI	ATTTAAAT	1 cut(s)	936
SmiMI	CAYNNNNRTG	3 cut(s)	82, 311, 1148
SmlI	CTYRAG	2 cut(s)	1071, 1355
SmoI	CTYRAG	2 cut(s)	1071, 1355
SseBI	AGGCCT	2 cut(s)	106, 1292
SsiI	CCGC	2 cut(s)	152, 1178
SspI	AATATT	2 cut(s)	357, 714
SspMI	CTAG	3 cut(s)	440, 1040, 1109
StuI	AGGCCT	2 cut(s)	106, 1292
StyD4I	CCNGG	1 cut(s)	549
SwaI	ATTTAAAT	1 cut(s)	936
TaaI	ACNGT	2 cut(s)	42, 974
TaiI	ACGT	2 cut(s)	335, 868
TaqI	TCGA	4 cut(s)	145, 558, 1072, 1126
TatI	WGTACW	2 cut(s)	37, 1183
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	560, 1153
Tru1I	TTAA	5 cut(s)	432, 935, 1224, 1356, 1485
Tru9I	TTAA	5 cut(s)	432, 935, 1224, 1356, 1485
TscAI	CASTG	2 cut(s)	846, 1012
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	5 cut(s)	23, 208, 260, 733, 895
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	7 cut(s)	66, 357, 560, 609, 674, 867, 1148
TspGWI	ACGGA	2 cut(s)	489, 1473
TspRI	CASTG	2 cut(s)	846, 1012
Vha464I	CTTAAG	1 cut(s)	1355
VspI	ATTAAT	1 cut(s)	1485
XagI	CCTNNNNNAGG	1 cut(s)	527
XapI	RAATTY	2 cut(s)	141, 1220
XbaI	TCTAGA	1 cut(s)	1108
XceI	RCATGY	2 cut(s)	314, 1300
XhoI	CTCGAG	1 cut(s)	1071
XmnI	GAANNNNTTC	2 cut(s)	293, 454
XspI	CTAG	3 cut(s)	440, 1040, 1109
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.