Rh1AG193800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001937
Physical Location & Seq
Forward (+)
37009296 .. 37013103
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG193800.1

Sequence Viewer

Length: 1527 bp
ATGAAGATTTTGAAGCAGCAGCAAATGGAAGGTGAGAAAATGGAAGCAGAGCTATTAGTGGTAGCAGCAAAGATCACATTGTCGGTATTGGTGGGTGGGTTTCTGCTGTTGTTCTTGTATCTCTATGAACTACTGATATTGAGGCCTAAAGGGCTAAGATCAAAGCTCCAAAAGCAAGGAATTAGAGGGCCTCGTCCGTCATTTCTCTTGGGGAATATCCTTGCATTAAAGAGCCTTCAAAGCAAGGTCCAGTCATCTGCATCAAAGACTACAGATCCTCAAAAGCCCTTTCATGATGATGATCGTGTGGCTTCTATTTGTCATCAATGGCCTTCAAAAATCTTCCCCCACATAGAGGAATGGAGAAATGAATATGGGCCAACATTTATGTATGCACTTGTCCACATGCAACAATTATGTATAACAGATGTAGAGCTATTGAAGGAACTTGGGCTTTGCAAGAAAACTATCGCTCCTGAATTATACCTTGCTAAGATTAAGGGCATGATGGACCTAATAGTGGACTCTACAACCTCAGTGCTAAGAACTTGGGAAAGTGAAATCCAAACGCAGGGAGGAACTGCAGAAATTAGAATTGGTGAGAATCTAAGAAACATATCTGGAGATATAATTGCAAAAGCTTGTTTTCAGAGCAATTATAGTGAAGGAGAAGAAATATTCTCAAGACTTAGGACTCTACAAAAGGTTTTGTCAAAGGGTATGATGGGGGTAGAAGGCTTAATCAGATGGTTGCCAACAATCGAAAATAGAGAAATATGGAGATTAGAGAAGGAAATTGAGTCAATGATATTGAATGTGGTAAAACAGCGCAGTGAAGCTTCATATGAAAAAGATTTGCTGCAAATGATTCTTCAGGGTGCTGAAACTTCGGGTGAAAATGGCCTATCACATAAGAAGTTCATTGTTGATAATTGCAAAACCATATTCATTGCTGCCCATGAGACCACTGCCGTTGCAGCATCATGGAGCTTGATGCTACTAGCTTTACATCCAGATTGGCAAGCTCGTGTTCGTGCTGAGGTGCTCGAAATCTGCGGGGATAGGCCTCTACATGCAGATATGCTTCCAAGCATGAAAGTGCTCACAATGGTGATTCAGGAAGTATTGCGTCTATACTCACCTGTATTTTTTTTAGCAAGAGAGGTCCTTGAAACTATCACATTGAAAAACATTGTGATACCAAAGGGTGTGGTCCTTCAGATACCAGTACCCTTTCTACACCAGAACCCTGATATATGGGGCCCTGACGCGCATAAGTTCAATCCAGAAAGATTTGCCAGTGGAGTTCTCAAGGCTTGCAACTCTCCACATGCCTACATGCCATTCGGACTTGGTCCCCGAATCTGTGTTGGTCAACATTTAGCAATAACTGAGCTTAAGGTGATTCTTTTTTTGATTCTATCAAAGTTTTGTTTTTCCCTCTCACCAGCATACCAGCATTCCCCTGCTTATAATCTCTTAACGGAGCCTGAACATGGTGTCATTCTCTGTATGAGGAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

508

Amino Acids

57.38

Weight (kDa)

8.22

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 156 - 500 4.5e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1473
AccII CGCG 1 cut(s) 1271
AciI CCGC 1 cut(s) 1056
AclWI GGATC 1 cut(s) 269
AcuI CTGAAG 2 cut(s) 857, 1202
AfaI GTAC 1 cut(s) 1230
AfiI CCNNNNNNNGG 4 cut(s) 355, 520, 571, 1496
AflII CTTAAG 1 cut(s) 1397
AgsI TTSAA 8 cut(s) 13, 239, 336, 442, 814, 1172, 1186, 1282
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AleI CACNNNNGTG 1 cut(s) 1109
AluBI AGCT 9 cut(s) 52, 166, 436, 641, 839, 990, 1004, 1025, 1396
AluI AGCT 9 cut(s) 52, 166, 436, 641, 839, 990, 1004, 1025, 1396
Alw21I GWGCWC 2 cut(s) 1047, 1104
Alw26I GTCTC 1 cut(s) 956
AlwI GGATC 1 cut(s) 269
AoxI GGCC 7 cut(s) 143, 188, 329, 377, 901, 1064, 1261
ApaI GGGCCC 1 cut(s) 1265
ApeKI GCWGC 6 cut(s) 16, 19, 65, 859, 953, 977
AspLEI GCGC 2 cut(s) 831, 1273
AspS9I GGNCC 9 cut(s) 188, 247, 377, 511, 1165, 1213, 1261, 1262, 1355
AsuHPI GGTGA 7 cut(s) 44, 611, 905, 1123, 1131, 1414, 1437
AvaII GGWCC 5 cut(s) 247, 511, 1165, 1213, 1355
BaeGI GKGCMC 1 cut(s) 1265
BanII GRGCYC 1 cut(s) 1265
BauI CACGAG 1 cut(s) 1026
Bbv12I GWGCWC 2 cut(s) 1047, 1104
BbvCI CCTCAGC 1 cut(s) 1038
BbvI GCAGC 6 cut(s) 28, 31, 77, 846, 940, 989
BccI CCATC 3 cut(s) 502, 718, 741
BceAI ACGGC 1 cut(s) 956
BcoDI GTCTC 1 cut(s) 956
BfaI CTAG 1 cut(s) 1001
BfmI CTRYAG 2 cut(s) 270, 582
BfrI CTTAAG 1 cut(s) 1397
BglI GCCNNNNNGGC 1 cut(s) 151
BisI GCNGC 6 cut(s) 17, 20, 66, 860, 954, 978
BlsI GCNGC 6 cut(s) 18, 21, 67, 861, 955, 979
Bme18I GGWCC 5 cut(s) 247, 511, 1165, 1213, 1355
BmgT120I GGNCC 9 cut(s) 188, 247, 377, 511, 1165, 1213, 1261, 1262, 1355
BmiI GGNNCC 4 cut(s) 1262, 1263, 1357, 1488
BmsI GCATC 3 cut(s) 269, 984, 989
BpmI CTGGAG 1 cut(s) 642
Bpu10I CCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 2 cut(s) 667, 1295
BsaBI GATNNNNATC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 956
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 520, 571, 1496
Bse1I ACTGG 3 cut(s) 250, 1226, 1299
Bse3DI GCAATG 1 cut(s) 948
Bse8I GATNNNNATC 1 cut(s) 300
BseGI GGATG 1 cut(s) 1009
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 4 cut(s) 355, 520, 571, 1496
BseMI GCAATG 1 cut(s) 948
BseMII CTCAG 3 cut(s) 549, 1029, 1383
BseNI ACTGG 3 cut(s) 250, 1226, 1299
BseSI GKGCMC 1 cut(s) 1265
BseXI GCAGC 6 cut(s) 28, 31, 77, 846, 940, 989
Bsh1236I CGCG 1 cut(s) 1271
BshFI GGCC 7 cut(s) 145, 190, 331, 379, 903, 1066, 1263
BsiHKAI GWGCWC 2 cut(s) 1047, 1104
BslFI GGGAC 1 cut(s) 1341
BslI CCNNNNNNNGG 4 cut(s) 355, 520, 571, 1496
BsmAI GTCTC 1 cut(s) 956
BsmFI GGGAC 1 cut(s) 1341
BsmI GAATGC 1 cut(s) 1459
BsnI GGCC 7 cut(s) 145, 190, 331, 379, 903, 1066, 1263
Bso31I GGTCTC 1 cut(s) 956
Bsp120I GGGCCC 1 cut(s) 1261
Bsp1286I GDGCHC 3 cut(s) 1047, 1104, 1265
Bsp143I GATC 4 cut(s) 72, 158, 274, 301
BspACI CCGC 1 cut(s) 1056
BspANI GGCC 7 cut(s) 145, 190, 331, 379, 903, 1066, 1263
BspCNI CTCAG 3 cut(s) 548, 1030, 1384
BspFNI CGCG 1 cut(s) 1271
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 4 cut(s) 1262, 1263, 1357, 1488
BspMAI CTGCAG 1 cut(s) 586
BspPI GGATC 1 cut(s) 269
BspTI CTTAAG 1 cut(s) 1397
BspTNI GGTCTC 1 cut(s) 956
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 3 cut(s) 250, 1226, 1299
BssMI GATC 4 cut(s) 72, 158, 274, 301
BssSI CACGAG 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 1026
BstAFI CTTAAG 1 cut(s) 1397
BstC8I GCNNGC 2 cut(s) 1023, 1318
BstDEI CTNAG 8 cut(s) 155, 492, 535, 542, 608, 689, 1038, 1392
BstF5I GGATG 1 cut(s) 1009
BstFNI CGCG 1 cut(s) 1271
BstHHI GCGC 2 cut(s) 831, 1273
BstKTI GATC 4 cut(s) 75, 161, 277, 304
BstMAI GTCTC 1 cut(s) 956
BstMBI GATC 4 cut(s) 72, 158, 274, 301
BstMWI GCNNNNNNNGC 4 cut(s) 151, 172, 240, 977
BstNSI RCATGY 4 cut(s) 409, 1076, 1334, 1342
BstSFI CTRYAG 2 cut(s) 270, 582
BstSLI GKGCMC 1 cut(s) 1265
BstUI CGCG 1 cut(s) 1271
BstV1I GCAGC 6 cut(s) 28, 31, 77, 846, 940, 989
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 7 cut(s) 145, 190, 331, 379, 903, 1066, 1263
BtsCI GGATG 1 cut(s) 1009
BtsI GCAGTG 2 cut(s) 838, 966
BtsIMutI CAGTG 4 cut(s) 543, 838, 966, 1306
Cac8I GCNNGC 2 cut(s) 1023, 1318
CciI TCATGA 1 cut(s) 292
CfoI GCGC 2 cut(s) 831, 1273
Cfr13I GGNCC 9 cut(s) 188, 247, 377, 511, 1165, 1213, 1261, 1262, 1355
CseI GACGC 2 cut(s) 1118, 1277
Csp6I GTAC 1 cut(s) 1229
CspCI CAANNNNNGTGG 4 cut(s) 955, 990, 1191, 1226
CviQI GTAC 1 cut(s) 1229
DdeI CTNAG 8 cut(s) 155, 492, 535, 542, 608, 689, 1038, 1392
DpnI GATC 4 cut(s) 74, 160, 276, 303
DpnII GATC 4 cut(s) 72, 158, 274, 301
Eco147I AGGCCT 2 cut(s) 145, 1066
Eco24I GRGCYC 1 cut(s) 1265
Eco31I GGTCTC 1 cut(s) 956
Eco47I GGWCC 5 cut(s) 247, 511, 1165, 1213, 1355
Eco57I CTGAAG 2 cut(s) 857, 1202
EcoO109I RGGNCCY 4 cut(s) 188, 1165, 1261, 1262
EcoT38I GRGCYC 1 cut(s) 1265
FaqI GGGAC 1 cut(s) 1341
FauI CCCGC 1 cut(s) 1049
FauNDI CATATG 1 cut(s) 844
Fnu4HI GCNGC 6 cut(s) 17, 20, 66, 860, 954, 978
FokI GGATG 1 cut(s) 996
FriOI GRGCYC 1 cut(s) 1265
Fsp4HI GCNGC 6 cut(s) 17, 20, 66, 860, 954, 978
FspBI CTAG 1 cut(s) 1001
GlaI GCGC 2 cut(s) 830, 1272
GluI GCNGC 6 cut(s) 17, 20, 66, 860, 954, 978
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 7 cut(s) 145, 190, 331, 379, 903, 1066, 1263
HgaI GACGC 2 cut(s) 1118, 1277
HhaI GCGC 2 cut(s) 831, 1273
Hin6I GCGC 2 cut(s) 829, 1271
HinP1I GCGC 2 cut(s) 829, 1271
HincII GTYRAC 1 cut(s) 1376
HindII GTYRAC 1 cut(s) 1376
HindIII AAGCTT 2 cut(s) 639, 837
HinfI GANTC 9 cut(s) 524, 604, 694, 800, 868, 1114, 1362, 1405, 1417
HphI GGTGA 7 cut(s) 44, 611, 905, 1123, 1131, 1414, 1437
Hpy166II GTNNAC 3 cut(s) 403, 523, 1376
Hpy188I TCNGA 4 cut(s) 651, 746, 1221, 1349
Hpy188III TCNNGA 7 cut(s) 293, 476, 621, 684, 1013, 1118, 1286
Hpy8I GTNNAC 3 cut(s) 403, 523, 1376
HpyAV CCTTC 8 cut(s) 23, 245, 342, 436, 659, 728, 784, 1226
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 172, 240, 977
HpyF3I CTNAG 8 cut(s) 155, 492, 535, 542, 608, 689, 1038, 1392
HspAI GCGC 2 cut(s) 829, 1271
Kzo9I GATC 4 cut(s) 72, 158, 274, 301
LmnI GCTCC 4 cut(s) 171, 478, 987, 1486
Lsp1109I GCAGC 6 cut(s) 28, 31, 77, 846, 940, 989
LweI GCATC 3 cut(s) 269, 984, 989
MaeI CTAG 1 cut(s) 1001
MalI GATC 4 cut(s) 74, 160, 276, 303
MboI GATC 4 cut(s) 72, 158, 274, 301
MboII GAAGA 4 cut(s) 16, 334, 683, 863
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 3 cut(s) 1047, 1104, 1265
MluCI AATT 9 cut(s) 180, 413, 479, 588, 594, 630, 655, 795, 931
MlyI GAGTC 3 cut(s) 518, 688, 809
MseI TTAA 5 cut(s) 227, 498, 740, 1398, 1481
MslI CAYNNNNRTG 3 cut(s) 297, 1097, 1109
MspCI CTTAAG 1 cut(s) 1397
Mva1269I GAATGC 1 cut(s) 1459
MvnI CGCG 1 cut(s) 1271
MwoI GCNNNNNNNGC 4 cut(s) 151, 172, 240, 977
NdeI CATATG 1 cut(s) 844
NdeII GATC 4 cut(s) 72, 158, 274, 301
NlaIV GGNNCC 4 cut(s) 1262, 1263, 1357, 1488
NspI RCATGY 4 cut(s) 409, 1076, 1334, 1342
OliI CACNNNNGTG 1 cut(s) 1109
PagI TCATGA 1 cut(s) 292
PceI AGGCCT 2 cut(s) 145, 1066
PctI GAATGC 1 cut(s) 1459
PfeI GAWTC 6 cut(s) 604, 868, 1114, 1362, 1405, 1417
PflFI GACNNNGTC 1 cut(s) 1353
PkrI GCNGC 6 cut(s) 18, 21, 67, 861, 955, 979
PleI GAGTC 3 cut(s) 518, 688, 808
PpsI GAGTC 3 cut(s) 518, 688, 808
PpuMI RGGWCCY 1 cut(s) 1165
PsiI TTATAA 1 cut(s) 1473
Psp5II RGGWCCY 1 cut(s) 1165
PspN4I GGNNCC 4 cut(s) 1262, 1263, 1357, 1488
PspOMI GGGCCC 1 cut(s) 1261
PspPI GGNCC 9 cut(s) 188, 247, 377, 511, 1165, 1213, 1261, 1262, 1355
PspPPI RGGWCCY 1 cut(s) 1165
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 1353
RsaI GTAC 1 cut(s) 1230
RsaNI GTAC 1 cut(s) 1229
RseI CAYNNNNRTG 3 cut(s) 297, 1097, 1109
SaqAI TTAA 5 cut(s) 227, 498, 740, 1398, 1481
SatI GCNGC 6 cut(s) 17, 20, 66, 860, 954, 978
Sau3AI GATC 4 cut(s) 72, 158, 274, 301
Sau96I GGNCC 9 cut(s) 188, 247, 377, 511, 1165, 1213, 1261, 1262, 1355
SchI GAGTC 3 cut(s) 518, 688, 809
SduI GDGCHC 3 cut(s) 1047, 1104, 1265
SfaNI GCATC 3 cut(s) 269, 984, 989
SfcI CTRYAG 2 cut(s) 270, 582
SinI GGWCC 5 cut(s) 247, 511, 1165, 1213, 1355
SmiMI CAYNNNNRTG 3 cut(s) 297, 1097, 1109
SmlI CTYRAG 3 cut(s) 682, 1310, 1397
SmoI CTYRAG 3 cut(s) 682, 1310, 1397
Sse9I AATT 9 cut(s) 180, 413, 479, 588, 594, 630, 655, 795, 931
SseBI AGGCCT 2 cut(s) 145, 1066
SsiI CCGC 1 cut(s) 1056
SspI AATATT 1 cut(s) 678
SspMI CTAG 1 cut(s) 1001
StuI AGGCCT 2 cut(s) 145, 1066
TaqI TCGA 2 cut(s) 762, 1047
TasI AATT 9 cut(s) 180, 413, 479, 588, 594, 630, 655, 795, 931
TfiI GAWTC 6 cut(s) 604, 868, 1114, 1362, 1405, 1417
Tru1I TTAA 5 cut(s) 227, 498, 740, 1398, 1481
Tru9I TTAA 5 cut(s) 227, 498, 740, 1398, 1481
TscAI CASTG 4 cut(s) 543, 838, 973, 1306
TseI GCWGC 6 cut(s) 16, 19, 65, 859, 953, 977
TspDTI ATGAA 9 cut(s) 17, 141, 281, 384, 831, 861, 910, 937, 1109
TspGWI ACGGA 2 cut(s) 186, 1499
TspRI CASTG 4 cut(s) 543, 838, 973, 1306
Tth111I GACNNNGTC 1 cut(s) 1353
Vha464I CTTAAG 1 cut(s) 1397
VpaK11BI GGWCC 5 cut(s) 247, 511, 1165, 1213, 1355
XceI RCATGY 4 cut(s) 409, 1076, 1334, 1342
XspI CTAG 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.