Rmu_sc0003762.1_g000011

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003762.1
OG0001937
Physical Location & Seq
Forward (+)
35768 .. 36115
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003762.1_g000011.1.cds

Sequence Viewer

Length: 348 bp
atggaagcagagttagcagtagctgcaaagaaggtagtactgtcagtattggtgtgcgggcttttgttcttggtttcatatttgtgtgaacttctgctgttgaggcctaaatccataagatcaaagctggaaaagcaaggaattcgagggccgcgtcctacctttctattgggaagcctcccagaacagaagaggctccaaagcaagcagcagggtcagtcaatagcaacaaggactgatgatgatgatgatcatgcagcttctttttctcatcaatggtatttgaaaatcttcccccacatagagcaatggagaaatgaatacggtatgtgtttcatattactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

115

Amino Acids

13.17

Weight (kDa)

8.86

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AciI CCGC 2 cut(s) 57, 152
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 39
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 3 cut(s) 23, 127, 260
AluI AGCT 3 cut(s) 23, 127, 260
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 2 cut(s) 104, 149
ApeKI GCWGC 3 cut(s) 23, 208, 257
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 149
BbvI GCAGC 3 cut(s) 10, 220, 269
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BclI TGATCA 1 cut(s) 250
BfaI CTAG 1 cut(s) 346
BisI GCNGC 4 cut(s) 24, 152, 209, 258
BlsI GCNGC 4 cut(s) 25, 153, 210, 259
BmcAI AGTACT 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 249
BseJI GATNNNNATC 1 cut(s) 249
BseMI GCAATG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 10, 220, 269
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 106, 151
BsnI GGCC 2 cut(s) 106, 151
Bsp143I GATC 2 cut(s) 119, 250
BspACI CCGC 2 cut(s) 57, 152
BspANI GGCC 2 cut(s) 106, 151
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 314
BssMI GATC 2 cut(s) 119, 250
Bst4CI ACNGT 2 cut(s) 42, 326
Bst6I CTCTTC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 59, 206
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 2 cut(s) 122, 253
BstMBI GATC 2 cut(s) 119, 250
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 10, 220, 269
BsuRI GGCC 2 cut(s) 106, 151
Cac8I GCNNGC 2 cut(s) 59, 206
CaiI CAGNNNCTG 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 149
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 254
CviJI RGCY 8 cut(s) 23, 61, 106, 127, 151, 177, 196, 260
CviKI_1 RGCY 8 cut(s) 23, 61, 106, 127, 151, 177, 196, 260
CviQI GTAC 1 cut(s) 38
DpnI GATC 2 cut(s) 121, 252
DpnII GATC 2 cut(s) 119, 250
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco147I AGGCCT 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 141
FaeI CATG 1 cut(s) 257
FaiI YATR 6 cut(s) 79, 116, 255, 302, 329, 338
FatI CATG 1 cut(s) 253
FauI CCCGC 1 cut(s) 50
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 24, 152, 209, 258
Fsp4HI GCNGC 4 cut(s) 24, 152, 209, 258
FspBI CTAG 1 cut(s) 346
GluI GCNGC 4 cut(s) 24, 152, 209, 258
HaeIII GGCC 2 cut(s) 106, 151
HgaI GACGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 42, 326
HpyCH4V TGCA 2 cut(s) 26, 257
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
Hsp92II CATG 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 2 cut(s) 119, 250
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 3 cut(s) 113, 195, 197
Lsp1109I GCAGC 3 cut(s) 10, 220, 269
MaeI CTAG 1 cut(s) 346
MalI GATC 2 cut(s) 121, 252
MboI GATC 2 cut(s) 119, 250
MboII GAAGA 2 cut(s) 202, 283
MluCI AATT 1 cut(s) 141
MnlI CCTC 4 cut(s) 96, 140, 186, 188
MroXI GAANNNNTTC 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 82
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
NdeII GATC 2 cut(s) 119, 250
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 290
PkrI GCNGC 4 cut(s) 25, 153, 210, 259
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 23
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 82
SatI GCNGC 4 cut(s) 24, 152, 209, 258
Sau3AI GATC 2 cut(s) 119, 250
Sau96I GGNCC 1 cut(s) 149
ScaI AGTACT 1 cut(s) 39
SetI ASST 5 cut(s) 25, 36, 129, 164, 262
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 1 cut(s) 141
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 2 cut(s) 57, 152
SspMI CTAG 1 cut(s) 346
StuI AGGCCT 1 cut(s) 106
TaaI ACNGT 2 cut(s) 42, 326
TaqI TCGA 1 cut(s) 145
TasI AATT 1 cut(s) 141
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 154
TseI GCWGC 3 cut(s) 23, 208, 257
TspDTI ATGAA 3 cut(s) 66, 325, 333
XapI RAATTY 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 1 cut(s) 346
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.