Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005950.1

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Reverse (-)

14425 .. 18512

Gene Structure 4088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005950.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

atgaagattttgaagcagcagcaaatggaaggtgagaaaatggaagcagagctattagtggtagcagcaaagatcacattgtcggtattggtgggtgggtttctgctgttgttcttgtatctctatgaactactaatattgaggcctaaagggctaagatcaaagctccaaaagcaaggaattagagggcctcgtccgtcatttctcttggggaatatccttgcattaaagagccttcaaagcaaggtccagtcatctgcatcaaagactacagatcctcaaaagccctatcatgatgatgatcgtgtggcttctatttgtcatcaatggccttcaaaaatcttcccccacatagaggaatggagaaatgaatatgggccaacatatatgtatgcacttgtccacatgcaacaattatgtataacagatgtagagctattgaaggaacttgggctttgcaagtcattaatcttgggcactccttccataacgtccaatattctcggacctcttctgggacagggtcttttatcatcgaatggattaatttgggcccatcagaggaaaactatcgctcctgaattataccttgctaagatcaagggcatgatggacctaatagtggactctacaacctcagtgctaagaacttgggaaagtgaaatccaaacgcagggaggaactgcagaaattagaattgatgagaatctaagaaacatatctggagatataattgcaaaagcttgttttcagagcaattatagtgaaggagaagaaatattctcaagacttaggactctacaaaaggttttgtcaaagggtatgatgggggtagaaggcttaatcagatggttgccaacaatcgaaaatagagaaatatggagattagagaaggaaattgagtcaatgatattgaaggtggtaaaacagcgcagtgaagcttcatatgagaaagatttgctgcaaatgatgattcttcagggtgctgaaacttctggtgaaaatggcctatcacataagaagttcattgttgataattgcaaaaccatattcattgctgcccatgagaccactgccgttgcagcatcatggagcttgatgctactagctttacatccagattggcaagctcgtgttcgtgctgaggtgctcgaaatctgcggggataggcctctacatgcagatatgcttccaagcatgaaagtgataccagtaccctttctacaccagaaccctgatatatggggccctgacgcgcataagttcaatccagaaagatttgccagtggagttctcaaggcttgcaactctccacatgcctacatgccattcggacttggtccccgaatctgtgttggtcaacatttagcaataactgagcttaaggtgattctttctttgattctatcaaagttttgtttttccctctcaccagcataccagcattcccctgcttataatctcttaacggagcctgaacatggtgtcattctccgtatgaggagtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

503

Amino Acids

56.55

Weight (kDa)

8.43

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1458
AccII	CGCG	1 cut(s)	1256
AciI	CCGC	1 cut(s)	1161
AclWI	GGATC	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	962
AfaI	GTAC	1 cut(s)	1215
AfiI	CCNNNNNNNGG	6 cut(s)	355, 515, 561, 622, 673, 1481
AflII	CTTAAG	1 cut(s)	1382
AgsI	TTSAA	6 cut(s)	13, 239, 336, 442, 916, 1267
AluBI	AGCT	9 cut(s)	52, 166, 436, 743, 941, 1095, 1109, 1130, 1381
AluI	AGCT	9 cut(s)	52, 166, 436, 743, 941, 1095, 1109, 1130, 1381
Alw21I	GWGCWC	1 cut(s)	1152
Alw26I	GTCTC	1 cut(s)	1061
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	8 cut(s)	143, 188, 329, 377, 552, 1006, 1169, 1246
ApaI	GGGCCC	2 cut(s)	556, 1250
ApeKI	GCWGC	6 cut(s)	16, 19, 65, 961, 1058, 1082
AseI	ATTAAT	2 cut(s)	467, 545
AspLEI	GCGC	2 cut(s)	933, 1258
AsuHPI	GGTGA	4 cut(s)	44, 1010, 1399, 1422
AvaII	GGWCC	4 cut(s)	247, 506, 613, 1340
BaeGI	GKGCMC	3 cut(s)	479, 556, 1250
BanII	GRGCYC	2 cut(s)	556, 1250
BauI	CACGAG	1 cut(s)	1131
Bbv12I	GWGCWC	1 cut(s)	1152
BbvCI	CCTCAGC	1 cut(s)	1143
BbvI	GCAGC	6 cut(s)	28, 31, 77, 948, 1045, 1094
BccI	CCATC	4 cut(s)	564, 604, 820, 843
BceAI	ACGGC	1 cut(s)	1061
BcoDI	GTCTC	1 cut(s)	1061
BfaI	CTAG	1 cut(s)	1106
BfmI	CTRYAG	2 cut(s)	270, 684
BfrI	CTTAAG	1 cut(s)	1382
BglI	GCCNNNNNGGC	1 cut(s)	151
BisI	GCNGC	6 cut(s)	17, 20, 66, 962, 1059, 1083
BlsI	GCNGC	6 cut(s)	18, 21, 67, 963, 1060, 1084
Bme18I	GGWCC	4 cut(s)	247, 506, 613, 1340
BmiI	GGNNCC	5 cut(s)	554, 1247, 1248, 1342, 1473
BmsI	GCATC	3 cut(s)	269, 1089, 1094
BpmI	CTGGAG	1 cut(s)	744
Bpu10I	CCTNAGC	1 cut(s)	1143
BpuEI	CTTGAG	2 cut(s)	769, 1280
BsaBI	GATNNNNATC	2 cut(s)	300, 705
BsaI	GGTCTC	1 cut(s)	1061
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	6 cut(s)	355, 515, 561, 622, 673, 1481
Bse1I	ACTGG	3 cut(s)	250, 1211, 1284
Bse3DI	GCAATG	1 cut(s)	1053
Bse8I	GATNNNNATC	2 cut(s)	300, 705
BseGI	GGATG	1 cut(s)	1114
BseJI	GATNNNNATC	2 cut(s)	300, 705
BseLI	CCNNNNNNNGG	6 cut(s)	355, 515, 561, 622, 673, 1481
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	3 cut(s)	651, 1134, 1368
BseNI	ACTGG	3 cut(s)	250, 1211, 1284
BseSI	GKGCMC	3 cut(s)	479, 556, 1250
BseXI	GCAGC	6 cut(s)	28, 31, 77, 948, 1045, 1094
Bsh1236I	CGCG	1 cut(s)	1256
BshFI	GGCC	8 cut(s)	145, 190, 331, 379, 554, 1008, 1171, 1248
BsiHKAI	GWGCWC	1 cut(s)	1152
BslFI	GGGAC	2 cut(s)	531, 1326
BslI	CCNNNNNNNGG	6 cut(s)	355, 515, 561, 622, 673, 1481
BsmAI	GTCTC	1 cut(s)	1061
BsmFI	GGGAC	2 cut(s)	531, 1326
BsmI	GAATGC	1 cut(s)	1444
BsnI	GGCC	8 cut(s)	145, 190, 331, 379, 554, 1008, 1171, 1248
Bso31I	GGTCTC	1 cut(s)	1061
Bsp120I	GGGCCC	2 cut(s)	552, 1246
Bsp1286I	GDGCHC	4 cut(s)	479, 556, 1152, 1250
Bsp143I	GATC	5 cut(s)	72, 158, 274, 301, 597
BspACI	CCGC	1 cut(s)	1161
BspANI	GGCC	8 cut(s)	145, 190, 331, 379, 554, 1008, 1171, 1248
BspCNI	CTCAG	3 cut(s)	650, 1135, 1369
BspFNI	CGCG	1 cut(s)	1256
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	5 cut(s)	554, 1247, 1248, 1342, 1473
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	1 cut(s)	269
BspTI	CTTAAG	1 cut(s)	1382
BspTNI	GGTCTC	1 cut(s)	1061
BsrDI	GCAATG	1 cut(s)	1053
BsrI	ACTGG	3 cut(s)	250, 1211, 1284
BssMI	GATC	5 cut(s)	72, 158, 274, 301, 597
BssSI	CACGAG	1 cut(s)	1131
Bst2BI	CACGAG	1 cut(s)	1131
Bst6I	CTCTTC	1 cut(s)	516
BstAFI	CTTAAG	1 cut(s)	1382
BstC8I	GCNNGC	2 cut(s)	1128, 1303
BstDEI	CTNAG	8 cut(s)	155, 594, 637, 644, 710, 791, 1143, 1377
BstF5I	GGATG	1 cut(s)	1114
BstFNI	CGCG	1 cut(s)	1256
BstHHI	GCGC	2 cut(s)	933, 1258
BstKTI	GATC	5 cut(s)	75, 161, 277, 304, 600
BstMAI	GTCTC	1 cut(s)	1061
BstMBI	GATC	5 cut(s)	72, 158, 274, 301, 597
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 172, 240, 1082
BstNSI	RCATGY	4 cut(s)	409, 1181, 1319, 1327
BstSFI	CTRYAG	2 cut(s)	270, 684
BstSLI	GKGCMC	3 cut(s)	479, 556, 1250
BstUI	CGCG	1 cut(s)	1256
BstV1I	GCAGC	6 cut(s)	28, 31, 77, 948, 1045, 1094
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	8 cut(s)	145, 190, 331, 379, 554, 1008, 1171, 1248
BtsCI	GGATG	1 cut(s)	1114
BtsI	GCAGTG	2 cut(s)	940, 1071
BtsIMutI	CAGTG	4 cut(s)	645, 940, 1071, 1291
Cac8I	GCNNGC	2 cut(s)	1128, 1303
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	2 cut(s)	933, 1258
CseI	GACGC	1 cut(s)	1262
Csp6I	GTAC	1 cut(s)	1214
CspCI	CAANNNNNGTGG	2 cut(s)	1060, 1095
CviQI	GTAC	1 cut(s)	1214
DdeI	CTNAG	8 cut(s)	155, 594, 637, 644, 710, 791, 1143, 1377
DpnI	GATC	5 cut(s)	74, 160, 276, 303, 599
DpnII	GATC	5 cut(s)	72, 158, 274, 301, 597
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco147I	AGGCCT	2 cut(s)	145, 1171
Eco24I	GRGCYC	2 cut(s)	556, 1250
Eco31I	GGTCTC	1 cut(s)	1061
Eco47I	GGWCC	4 cut(s)	247, 506, 613, 1340
Eco57I	CTGAAG	1 cut(s)	962
EcoO109I	RGGNCCY	3 cut(s)	188, 1246, 1247
EcoT38I	GRGCYC	2 cut(s)	556, 1250
FaqI	GGGAC	2 cut(s)	531, 1326
FauI	CCCGC	1 cut(s)	1154
FauNDI	CATATG	1 cut(s)	946
Fnu4HI	GCNGC	6 cut(s)	17, 20, 66, 962, 1059, 1083
FokI	GGATG	1 cut(s)	1101
FriOI	GRGCYC	2 cut(s)	556, 1250
Fsp4HI	GCNGC	6 cut(s)	17, 20, 66, 962, 1059, 1083
FspBI	CTAG	1 cut(s)	1106
GlaI	GCGC	2 cut(s)	932, 1257
GluI	GCNGC	6 cut(s)	17, 20, 66, 962, 1059, 1083
GsuI	CTGGAG	1 cut(s)	744
HaeIII	GGCC	8 cut(s)	145, 190, 331, 379, 554, 1008, 1171, 1248
HgaI	GACGC	1 cut(s)	1262
HhaI	GCGC	2 cut(s)	933, 1258
Hin6I	GCGC	2 cut(s)	931, 1256
HinP1I	GCGC	2 cut(s)	931, 1256
HincII	GTYRAC	1 cut(s)	1361
HindII	GTYRAC	1 cut(s)	1361
HindIII	AAGCTT	2 cut(s)	741, 939
HinfI	GANTC	8 cut(s)	626, 706, 796, 902, 973, 1347, 1390, 1402
HphI	GGTGA	4 cut(s)	44, 1010, 1399, 1422
Hpy166II	GTNNAC	3 cut(s)	403, 625, 1361
Hpy188I	TCNGA	5 cut(s)	506, 561, 753, 848, 1334
Hpy188III	TCNNGA	6 cut(s)	293, 578, 723, 786, 1118, 1271
Hpy8I	GTNNAC	3 cut(s)	403, 625, 1361
HpyAV	CCTTC	9 cut(s)	23, 245, 342, 436, 492, 761, 830, 886, 910
HpyCH4IV	ACGT	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 172, 240, 1082
HpyF3I	CTNAG	8 cut(s)	155, 594, 637, 644, 710, 791, 1143, 1377
HpySE526I	ACGT	1 cut(s)	491
HspAI	GCGC	2 cut(s)	931, 1256
Kzo9I	GATC	5 cut(s)	72, 158, 274, 301, 597
LmnI	GCTCC	4 cut(s)	171, 580, 1092, 1471
Lsp1109I	GCAGC	6 cut(s)	28, 31, 77, 948, 1045, 1094
LweI	GCATC	3 cut(s)	269, 1089, 1094
MaeI	CTAG	1 cut(s)	1106
MaeII	ACGT	1 cut(s)	491
MalI	GATC	5 cut(s)	74, 160, 276, 303, 599
MboI	GATC	5 cut(s)	72, 158, 274, 301, 597
MboII	GAAGA	5 cut(s)	16, 334, 503, 785, 968
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	4 cut(s)	479, 556, 1152, 1250
MlyI	GAGTC	3 cut(s)	620, 790, 911
MseI	TTAA	6 cut(s)	227, 467, 545, 842, 1383, 1466
MslI	CAYNNNNRTG	2 cut(s)	297, 1202
MspCI	CTTAAG	1 cut(s)	1382
Mva1269I	GAATGC	1 cut(s)	1444
MvnI	CGCG	1 cut(s)	1256
MwoI	GCNNNNNNNGC	4 cut(s)	151, 172, 240, 1082
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	5 cut(s)	72, 158, 274, 301, 597
NlaIV	GGNNCC	5 cut(s)	554, 1247, 1248, 1342, 1473
NspI	RCATGY	4 cut(s)	409, 1181, 1319, 1327
PagI	TCATGA	1 cut(s)	292
PceI	AGGCCT	2 cut(s)	145, 1171
PctI	GAATGC	1 cut(s)	1444
PfeI	GAWTC	5 cut(s)	706, 973, 1347, 1390, 1402
PflFI	GACNNNGTC	2 cut(s)	522, 1338
PkrI	GCNGC	6 cut(s)	18, 21, 67, 963, 1060, 1084
PleI	GAGTC	3 cut(s)	620, 790, 910
PpsI	GAGTC	3 cut(s)	620, 790, 910
PshBI	ATTAAT	2 cut(s)	467, 545
PsiI	TTATAA	1 cut(s)	1458
PspN4I	GGNNCC	5 cut(s)	554, 1247, 1248, 1342, 1473
PspOMI	GGGCCC	2 cut(s)	552, 1246
PstI	CTGCAG	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	274
PsyI	GACNNNGTC	2 cut(s)	522, 1338
RsaI	GTAC	1 cut(s)	1215
RsaNI	GTAC	1 cut(s)	1214
RseI	CAYNNNNRTG	2 cut(s)	297, 1202
SaqAI	TTAA	6 cut(s)	227, 467, 545, 842, 1383, 1466
SatI	GCNGC	6 cut(s)	17, 20, 66, 962, 1059, 1083
Sau3AI	GATC	5 cut(s)	72, 158, 274, 301, 597
SchI	GAGTC	3 cut(s)	620, 790, 911
SduI	GDGCHC	4 cut(s)	479, 556, 1152, 1250
SfaNI	GCATC	3 cut(s)	269, 1089, 1094
SfcI	CTRYAG	2 cut(s)	270, 684
SinI	GGWCC	4 cut(s)	247, 506, 613, 1340
SmiMI	CAYNNNNRTG	2 cut(s)	297, 1202
SmlI	CTYRAG	3 cut(s)	784, 1295, 1382
SmoI	CTYRAG	3 cut(s)	784, 1295, 1382
SseBI	AGGCCT	2 cut(s)	145, 1171
SsiI	CCGC	1 cut(s)	1161
SspI	AATATT	3 cut(s)	138, 499, 780
SspMI	CTAG	1 cut(s)	1106
StuI	AGGCCT	2 cut(s)	145, 1171
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	3 cut(s)	536, 864, 1152
TfiI	GAWTC	5 cut(s)	706, 973, 1347, 1390, 1402
Tru1I	TTAA	6 cut(s)	227, 467, 545, 842, 1383, 1466
Tru9I	TTAA	6 cut(s)	227, 467, 545, 842, 1383, 1466
TscAI	CASTG	4 cut(s)	645, 940, 1078, 1291
TseI	GCWGC	6 cut(s)	16, 19, 65, 961, 1058, 1082
TspDTI	ATGAA	7 cut(s)	17, 141, 384, 933, 1015, 1042, 1214
TspGWI	ACGGA	3 cut(s)	186, 1484, 1484
TspRI	CASTG	4 cut(s)	645, 940, 1078, 1291
Tth111I	GACNNNGTC	2 cut(s)	522, 1338
Vha464I	CTTAAG	1 cut(s)	1382
VpaK11BI	GGWCC	4 cut(s)	247, 506, 613, 1340
VspI	ATTAAT	2 cut(s)	467, 545
XceI	RCATGY	4 cut(s)	409, 1181, 1319, 1327
XspI	CTAG	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.