Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Reverse (-)

25583999 .. 25584488

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAACTCGGCTGCGAAGAATTCGGAATCACCTACCTCTGTCGACAAGGTCACCGGCGACAAGTTCGCTTGCAAATCGATTTCGAAGCGAAGCTGCAAAGATGATCGAAGCTGGAAAGGCAAGGAATTCGAGGGCCGCGTCCTACCTTTCTATTGGGAAACCTCCACGAACGAGAAGAGGCTCCAAAGCAAGCGGCGGGGTCGGTCAATAGCAACAAGGATCGATGATGATGATGATCATGCAGCATCTGTTTCTCATCAATGGTATTTGAAAATCTTTCCCCACATAGAGCAATGGAGAAATGAATACGGTCCAATATTTTTTGTGTTCATTTGCACACATGCAACATTTAGTAATAACGGATGTGGATGTGGAGCAACTCAGCCCCACTACTTGACCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

134

Amino Acids

15.35

Weight (kDa)

8.84

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	136, 193, 196
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	19, 125
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	2 cut(s)	93, 111
AluI	AGCT	2 cut(s)	93, 111
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	11, 93, 242
ApoI	RAATTY	2 cut(s)	19, 125
AspS9I	GGNCC	2 cut(s)	133, 311
AsuHPI	GGTGA	2 cut(s)	21, 43
AsuII	TTCGAA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	80, 254
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BclI	TGATCA	1 cut(s)	235
BisI	GCNGC	5 cut(s)	12, 94, 136, 194, 243
BlsI	GCNGC	5 cut(s)	13, 95, 137, 195, 244
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	133, 311
BmiI	GGNNCC	1 cut(s)	182
BmsI	GCATC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	83
Bsa29I	ATCGAT	2 cut(s)	77, 222
BsaBI	GATNNNNATC	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	234
BseCI	ATCGAT	2 cut(s)	77, 222
BseGI	GGATG	2 cut(s)	368, 374
BseJI	GATNNNNATC	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	80, 254
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	135
BshVI	ATCGAT	2 cut(s)	77, 222
BsiSI	CCGG	1 cut(s)	54
BsnI	GGCC	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	103, 219, 235
BspACI	CCGC	3 cut(s)	136, 193, 196
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	2 cut(s)	77, 222
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	3 cut(s)	103, 219, 235
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	70, 191
BstDEI	CTNAG	1 cut(s)	381
BstEII	GGTNACC	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	368, 374
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	106, 222, 238
BstMBI	GATC	3 cut(s)	103, 219, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	80, 254
Bsu15I	ATCGAT	2 cut(s)	77, 222
BsuRI	GGCC	1 cut(s)	135
BsuTUI	ATCGAT	2 cut(s)	77, 222
BtsCI	GGATG	2 cut(s)	368, 374
Cac8I	GCNNGC	2 cut(s)	70, 191
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	133, 311
ClaI	ATCGAT	2 cut(s)	77, 222
CseI	GACGC	1 cut(s)	127
CviAII	CATG	2 cut(s)	239, 341
CviJI	RGCY	6 cut(s)	11, 93, 111, 135, 181, 385
CviKI_1	RGCY	6 cut(s)	11, 93, 111, 135, 181, 385
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	3 cut(s)	105, 221, 237
DpnII	GATC	3 cut(s)	103, 219, 235
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	311
Eco91I	GGTNACC	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	49
EcoRI	GAATTC	2 cut(s)	19, 125
FaeI	CATG	2 cut(s)	242, 344
FaiI	YATR	3 cut(s)	240, 287, 342
FatI	CATG	2 cut(s)	238, 340
FauI	CCCGC	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	5 cut(s)	12, 94, 136, 194, 243
FokI	GGATG	2 cut(s)	375, 381
Fsp4HI	GCNGC	5 cut(s)	12, 94, 136, 194, 243
GluI	GCNGC	5 cut(s)	12, 94, 136, 194, 243
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	242, 344
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	21, 43
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	5 cut(s)	72, 96, 242, 336, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	242, 344
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	103, 219, 235
LmnI	GCTCC	2 cut(s)	186, 374
LpnPI	CCDG	2 cut(s)	67, 97
Lsp1109I	GCAGC	2 cut(s)	80, 254
LweI	GCATC	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	105, 221, 237
MboI	GATC	3 cut(s)	103, 219, 235
MboII	GAAGA	2 cut(s)	28, 187
MluCI	AATT	2 cut(s)	19, 125
MnlI	CCTC	4 cut(s)	46, 124, 171, 172
MspI	CCGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	3 cut(s)	103, 219, 235
NlaIII	CATG	2 cut(s)	242, 344
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	344
NspV	TTCGAA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	26
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	5 cut(s)	13, 95, 137, 195, 244
PspEI	GGTNACC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	2 cut(s)	133, 311
PstNI	CAGNNNCTG	1 cut(s)	248
PsyI	GACNNNGTC	1 cut(s)	47
SalI	GTCGAC	1 cut(s)	41
SatI	GCNGC	5 cut(s)	12, 94, 136, 194, 243
Sau3AI	GATC	3 cut(s)	103, 219, 235
Sau96I	GGNCC	2 cut(s)	133, 311
SetI	ASST	7 cut(s)	34, 38, 51, 95, 113, 148, 164
SfaNI	GCATC	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	83
SgrAI	CRCCGGYG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	19, 125
SsiI	CCGC	3 cut(s)	136, 193, 196
SspI	AATATT	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	6 cut(s)	42, 77, 83, 106, 129, 222
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	19, 125
TauI	GCSGC	2 cut(s)	138, 196
TfiI	GAWTC	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	3 cut(s)	11, 93, 242
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	17, 318, 319
TspGWI	ACGGA	1 cut(s)	375
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	2 cut(s)	19, 125
XceI	RCATGY	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.