Rroxscaffold_4G00309410

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001937
Physical Location & Seq
Reverse (-)
31205048 .. 31206352
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309410.1

Sequence Viewer

Length: 438 bp
ATGGAAGCAGGGTTAGCAGTAGCTGCAAAGATGGTAGTACTGTCAGTATTGGTGTGTGGGCTTTTGTTCTTGGTTTCATATTTGTGTGAACTTCTGCTGTTGAGGCCTAAATCCATAAGATCAAAGCTGGAAAAGCAAGGAATTCGAGGGCCGCGTCCTACCTTTCTATTGGGAAACCTCCCTGAACAGAAGAGGCTCCAAAGCAAGCAGCAGGGTCAGTCAATAGCAACAAGGACTGATGATGATGATGATCATGCAGCTTCTGTTTCTCATCAATGGTATTTGAAAATCTTCCCCCACATAGAGCAATGGAGAAATGAATATGGTCCAATATTTTTGTGTTCATCTGCACACATACAGCAATTAGTAATAACAGATATGGAAGTGGTGAAGGAAATTAGCTTGTGTAAGTCTCTAGTCTTGGGAAATCCTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

145

Amino Acids

16.26

Weight (kDa)

8.38

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 39
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 4 cut(s) 23, 127, 260, 402
AluI AGCT 4 cut(s) 23, 127, 260, 402
Alw26I GTCTC 1 cut(s) 417
AlwNI CAGNNNCTG 2 cut(s) 23, 263
AoxI GGCC 2 cut(s) 104, 149
ApeKI GCWGC 3 cut(s) 23, 208, 257
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 2 cut(s) 290, 430
AspS9I GGNCC 2 cut(s) 149, 326
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 326
BbvI GCAGC 3 cut(s) 10, 220, 269
BccI CCATC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 1 cut(s) 416
BisI GCNGC 4 cut(s) 24, 152, 209, 258
BlsI GCNGC 4 cut(s) 25, 153, 210, 259
BmcAI AGTACT 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 149, 326
BmiI GGNNCC 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 249
BseJI GATNNNNATC 1 cut(s) 249
BseMI GCAATG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 10, 220, 269
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 106, 151
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 2 cut(s) 106, 151
Bsp143I GATC 2 cut(s) 119, 250
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 106, 151
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 314
BssMI GATC 2 cut(s) 119, 250
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 206
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 2 cut(s) 122, 253
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 2 cut(s) 119, 250
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 10, 220, 269
BsuRI GGCC 2 cut(s) 106, 151
Cac8I GCNNGC 1 cut(s) 206
CaiI CAGNNNCTG 2 cut(s) 23, 263
Cfr13I GGNCC 2 cut(s) 149, 326
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 38
CviAII CATG 1 cut(s) 254
CviJI RGCY 8 cut(s) 23, 61, 106, 127, 151, 196, 260, 402
CviKI_1 RGCY 8 cut(s) 23, 61, 106, 127, 151, 196, 260, 402
CviQI GTAC 1 cut(s) 38
DpnI GATC 2 cut(s) 121, 252
DpnII GATC 2 cut(s) 119, 250
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco147I AGGCCT 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 141
FaeI CATG 1 cut(s) 257
FaiI YATR 7 cut(s) 79, 116, 255, 302, 324, 356, 380
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 24, 152, 209, 258
Fsp4HI GCNGC 4 cut(s) 24, 152, 209, 258
FspBI CTAG 1 cut(s) 416
GluI GCNGC 4 cut(s) 24, 152, 209, 258
HaeIII GGCC 2 cut(s) 106, 151
HgaI GACGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 257
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 26, 257, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
Hsp92II CATG 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 2 cut(s) 119, 250
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 3 cut(s) 113, 195, 197
Lsp1109I GCAGC 3 cut(s) 10, 220, 269
MaeI CTAG 1 cut(s) 416
MalI GATC 2 cut(s) 121, 252
MboI GATC 2 cut(s) 119, 250
MboII GAAGA 2 cut(s) 202, 283
MluCI AATT 3 cut(s) 141, 362, 396
MnlI CCTC 4 cut(s) 96, 140, 186, 188
MroXI GAANNNNTTC 2 cut(s) 290, 430
MslI CAYNNNNRTG 1 cut(s) 82
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 103, 133
NdeII GATC 2 cut(s) 119, 250
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 290, 430
PkrI GCNGC 4 cut(s) 25, 153, 210, 259
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 2 cut(s) 149, 326
PstNI CAGNNNCTG 2 cut(s) 23, 263
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 82
SatI GCNGC 4 cut(s) 24, 152, 209, 258
Sau3AI GATC 2 cut(s) 119, 250
Sau96I GGNCC 2 cut(s) 149, 326
ScaI AGTACT 1 cut(s) 39
SetI ASST 6 cut(s) 25, 129, 164, 180, 262, 404
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 3 cut(s) 141, 362, 396
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 1 cut(s) 152
SspI AATATT 1 cut(s) 333
SspMI CTAG 1 cut(s) 416
StuI AGGCCT 1 cut(s) 106
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 145
TasI AATT 3 cut(s) 141, 362, 396
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 154
TseI GCWGC 3 cut(s) 23, 208, 257
TspDTI ATGAA 3 cut(s) 66, 333, 333
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 141
XmnI GAANNNNTTC 2 cut(s) 290, 430
XspI CTAG 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.