Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Forward (+)

37112472 .. 37116662

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGCATATGAACTCGGCTGCGAAGAATTCAGAATCACCTACCTCTGTCGACAAGGTCACCAGCGACAAGTTCGCTTGCAAATCGATTTCGAAGCGAGCTGCAAAGATGGTAGTCTTGTCGGTATTGGTGGGAGAGGCATGCTCCTCTGTGAATATGTCCACGCCGGGGCTGGGCCAGCTTGACCGGTCACGTCGTGGTGGTTCCGAAGGGTCCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

7.53

Weight (kDa)

9.78

Isoelectric Point (pI)

71.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	165, 170
AgeI	ACCGGT	1 cut(s)	183
AjiI	CACGTC	1 cut(s)	191
AluBI	AGCT	2 cut(s)	98, 178
AluI	AGCT	2 cut(s)	98, 178
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	17, 98
ApoI	RAATTY	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	183
AspS9I	GGNCC	2 cut(s)	172, 210
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	27, 49
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	4, 85
BccI	CCATC	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	165
BfaI	CTAG	1 cut(s)	217
BisI	GCNGC	2 cut(s)	18, 99
BlsI	GCNGC	2 cut(s)	19, 100
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	210
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	172, 210
BmiI	GGNNCC	3 cut(s)	202, 211, 212
BmrFI	CCNGG	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bpu14I	TTCGAA	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 170
Bse118I	RCCGGY	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	165, 170
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	4, 85
BseYI	CCCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	174
BshTI	ACCGGT	1 cut(s)	183
BshVI	ATCGAT	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	164, 184
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	165, 170
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	89
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	83
BspLI	GGNNCC	3 cut(s)	202, 211, 212
BspT104I	TTCGAA	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	164
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	4 cut(s)	76, 96, 139, 176
BstEII	GGTNACC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	141
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	4, 85
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	191
Cac8I	GCNNGC	4 cut(s)	76, 96, 139, 176
Cfr10I	RCCGGY	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	172, 210
ClaI	ATCGAT	1 cut(s)	83
CspAI	ACCGGT	1 cut(s)	183
CviAII	CATG	1 cut(s)	138
CviJI	RGCY	5 cut(s)	17, 98, 169, 174, 178
CviKI_1	RGCY	5 cut(s)	17, 98, 169, 174, 178
DraIII	CACNNNGTG	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	210
EcoO65I	GGTNACC	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	141
FaiI	YATR	4 cut(s)	6, 8, 139, 155
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	6
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	18, 99
Fsp4HI	GCNGC	2 cut(s)	18, 99
FspBI	CTAG	1 cut(s)	217
GluI	GCNGC	2 cut(s)	18, 99
GsaI	CCCAGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	164, 184
Hin1II	CATG	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	164, 184
HphI	GGTGA	2 cut(s)	27, 49
Hpy166II	GTNNAC	2 cut(s)	49, 159
Hpy188I	TCNGA	2 cut(s)	31, 205
Hpy8I	GTNNAC	2 cut(s)	49, 159
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	4, 78, 101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	1 cut(s)	141
KflI	GGGWCCC	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	5 cut(s)	73, 155, 177, 188, 197
Lsp1109I	GCAGC	2 cut(s)	4, 85
MaeI	CTAG	1 cut(s)	217
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	2 cut(s)	55, 186
MboII	GAAGA	1 cut(s)	34
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	3 cut(s)	52, 127, 154
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	2 cut(s)	164, 184
MspR9I	CCNGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	6
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	3 cut(s)	202, 211, 212
NmuCI	GTSAC	2 cut(s)	55, 186
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	141
NspV	TTCGAA	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	32
PflFI	GACNNNGTC	1 cut(s)	53
PinAI	ACCGGT	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	19, 100
PpuMI	RGGWCCY	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	202, 211, 212
PspPI	GGNCC	2 cut(s)	172, 210
PspPPI	RGGWCCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	2 cut(s)	18, 99
Sau96I	GGNCC	2 cut(s)	172, 210
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	6 cut(s)	40, 44, 57, 100, 180, 193
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	210
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	163
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	3 cut(s)	48, 83, 89
TasI	AATT	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	32
TseFI	GTSAC	2 cut(s)	55, 186
TseI	GCWGC	2 cut(s)	17, 98
Tsp45I	GTSAC	2 cut(s)	55, 186
TspDTI	ATGAA	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	217
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.