Rh1CG178500

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001937
Physical Location & Seq
Forward (+)
39417896 .. 39423851
5956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG178500.1

Sequence Viewer

Length: 1572 bp
ATGGAAGCAGAGTTAGCAGTAGCTGCAAAGATGGTAGTACTGTCAGTATTGGTGTGTGGGCTTTTGTTCTTGGTTTCATATTTGTGTGAACTTCTGCTGTTGAGGCCTAAATCCATAAGATCAAAGCTGGAAAAGCAAGGAATTCGAGGGCCGCGTCCTACCTTTCTATTGGGAAACCTCCCTGAACAGAAGAGGCTCCAAAGCAAGCAGCAGGGTCAGTCAATAGCAACAAGGACTGATGATGATGATCATGCAGCTTCTTTTTCTCATCAATGGTATTTGAAAATCTTCCCCCACATAGAGCAATGGAGAAATGAATACGGTCCAATATTTTTGTGTTCATCTGCACACATACAACAATTAGTAATAACAGATATGGAAGTGGTGAAGGAAATTAGCTTGTGTAAGTCTCTAGTCTTGGGAAATCCTTCTGTAACATCCAAGGTTCTTGGGTCACTATTGGGAGAGGGCATTTTAGCGTCGAGCGGATCAATGTGGGAGCATCAAAGGAAAATTATCGCTCCTGAACTATACCTTGATAAGGTGAAGCTGGTAGTCGATTCTACAACCACAATGCTAAGAACTTGGGAAAATGAAGTCCAAAGGCAGGGAGAACTTGCTGAAATTAGAGTTGATGATCATTTGAGAAACTTATCAGCAGATGTCATCTCAAAAGCTTGTTTTCATAGCAATTATCATCAAGGAAAAGAAATATTCTCAAAAATTAGGAAGCTGCAAGAAGTTTTGGGAAAGGGATTGATGGGGATAGAAGCCTTGACCAGATGGTTTCCGACAACAGAAAATATAAAGATATGGATGTTGGAAAAGGAAACTCAATCACTGATATTGAAGGTGGTAAAACAACGTAGTGAAGGTTCATATGAGAAAGATTTGCTGCAAATGCTTCTTGAAGGTGCCAAAAGTTCTGGTGATTTAAATGGCCTATCATACAATAAGTTTATTGTTGATAACTGCAAGACTATATTCTTTGCTGGCCATGAGACCACTGCCCATGTAGCATCATGGAGCTTGCTGTTACTAGCTCTCCATCCAGATTGGCAAGCTCGTGCTCGAGCTGAGGTACTTGAAATCTGTGGTGATAAGCCTCTAGATGCTGATATGCTTCGACAAATGAAAGTGCTCACAATGGTGATTCAGGAGGTATTGCGTCTTTACCCGCCTGTACTCTTTGTAGCAAGAGAGGTATTTGAAACTATCAAATTTAAAAACATAACAATTCCAAAGGGGACGCTACTTCAAATACCAATCCCCTTCTTACACCAGAACCCTGATCTATGGGGATCTGATGCTCATAAGTTCAACCCAGAAAGATTTACCAATGGAATTGTCAAGGCTTGCAAGTCTCCACAGGCCTACATGCCATTCGGAGCAGGTTCTCGTATATGTGTTGGTCAACACTTGGCTATGATAGAACTTAAGGTGTTTCTTTCTATAATTCTCTCAAAGTTCTGCTTCTCCCTCTCATCAGCATACCAGCATTCTCCTGCGTATAACATTATTCTGGAGCCTGAATATGGTATTATTCTACAAATGCGAAGAGCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

523

Amino Acids

59.14

Weight (kDa)

8.64

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 98 - 505 3.1e-80 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1382
AccB1I GGYRCC 1 cut(s) 914
AccBSI CCGCTC 1 cut(s) 486
AccII CGCG 1 cut(s) 154
AciI CCGC 3 cut(s) 152, 486, 1178
AclWI GGATC 2 cut(s) 496, 1309
AcoI YGGCCR 1 cut(s) 994
AcsI RAATTY 2 cut(s) 141, 1220
AfaI GTAC 3 cut(s) 39, 1083, 1185
AfiI CCNNNNNNNGG 3 cut(s) 541, 607, 1535
AflII CTTAAG 1 cut(s) 1436
AgsI TTSAA 7 cut(s) 283, 850, 911, 1088, 1211, 1259, 1321
AleI CACNNNNGTG 1 cut(s) 1148
Alw21I GWGCWC 2 cut(s) 1072, 1143
Alw26I GTCTC 3 cut(s) 414, 995, 1368
AlwI GGATC 2 cut(s) 496, 1309
AlwNI CAGNNNCTG 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 1071
AoxI GGCC 5 cut(s) 104, 149, 940, 994, 1371
ApeKI GCWGC 5 cut(s) 23, 208, 254, 733, 895
ApoI RAATTY 2 cut(s) 141, 1220
Asp700I GAANNNNTTC 2 cut(s) 287, 427
AspS9I GGNCC 2 cut(s) 149, 323
AsuHPI GGTGA 5 cut(s) 397, 556, 941, 1109, 1162
AvaI CYCGRG 1 cut(s) 1071
AvaII GGWCC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 996
BanI GGYRCC 1 cut(s) 914
BauI CACGAG 1 cut(s) 1065
Bbv12I GWGCWC 2 cut(s) 1072, 1143
BbvCI CCTCAGC 1 cut(s) 1077
BbvI GCAGC 5 cut(s) 10, 220, 266, 720, 882
BccI CCATC 4 cut(s) 25, 754, 777, 1056
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BclI TGATCA 2 cut(s) 247, 637
BcoDI GTCTC 3 cut(s) 414, 995, 1368
BfaI CTAG 3 cut(s) 413, 1040, 1109
BfrI CTTAAG 1 cut(s) 1436
BfuAI ACCTGC 1 cut(s) 1382
BisI GCNGC 6 cut(s) 24, 152, 209, 255, 734, 896
BlsI GCNGC 6 cut(s) 25, 153, 210, 256, 735, 897
BmcAI AGTACT 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 323
BmeT110I CYCGRG 1 cut(s) 1071
BmgT120I GGNCC 2 cut(s) 149, 323
BmiI GGNNCC 3 cut(s) 197, 916, 1527
BmsI GCATC 4 cut(s) 511, 1028, 1102, 1297
BpmI CTGGAG 1 cut(s) 1544
Bpu10I CCTNAGC 1 cut(s) 1077
BsaBI GATNNNNATC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 1 cut(s) 441
BsaXI ACNNNNNCTCC 2 cut(s) 1029, 1059
Bsc4I CCNNNNNNNGG 3 cut(s) 541, 607, 1535
Bse3DI GCAATG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 3 cut(s) 437, 822, 1048
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 3 cut(s) 541, 607, 1535
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 1068
BseXI GCAGC 5 cut(s) 10, 220, 266, 720, 882
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 5 cut(s) 106, 151, 942, 996, 1373
BshNI GGYRCC 1 cut(s) 914
BsiHKAI GWGCWC 2 cut(s) 1072, 1143
BsiHKCI CYCGRG 1 cut(s) 1071
BslFI GGGAC 1 cut(s) 1261
BslI CCNNNNNNNGG 3 cut(s) 541, 607, 1535
BsmAI GTCTC 3 cut(s) 414, 995, 1368
BsmFI GGGAC 1 cut(s) 1261
BsmI GAATGC 1 cut(s) 1498
BsnI GGCC 5 cut(s) 106, 151, 942, 996, 1373
Bso31I GGTCTC 1 cut(s) 995
BsoBI CYCGRG 1 cut(s) 1071
Bsp1286I GDGCHC 2 cut(s) 1072, 1143
Bsp143I GATC 6 cut(s) 119, 247, 488, 637, 1291, 1301
BspACI CCGC 3 cut(s) 152, 486, 1178
BspANI GGCC 5 cut(s) 106, 151, 942, 996, 1373
BspCNI CTCAG 1 cut(s) 1069
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 197, 916, 1527
BspMI ACCTGC 1 cut(s) 1382
BspPI GGATC 2 cut(s) 496, 1309
BspQI GCTCTTC 1 cut(s) 1552
BspT107I GGYRCC 1 cut(s) 914
BspTI CTTAAG 1 cut(s) 1436
BspTNI GGTCTC 1 cut(s) 995
BsrBI CCGCTC 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 6 cut(s) 119, 247, 488, 637, 1291, 1301
BssSI CACGAG 1 cut(s) 1065
BssT1I CCWWGG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 1065
Bst4CI ACNGT 2 cut(s) 42, 323
Bst6I CTCTTC 2 cut(s) 185, 1552
BstAFI CTTAAG 1 cut(s) 1436
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 5 cut(s) 206, 994, 1031, 1062, 1357
BstDEI CTNAG 2 cut(s) 578, 1077
BstENI CCTNNNNNAGG 1 cut(s) 539
BstF5I GGATG 3 cut(s) 437, 822, 1048
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 6 cut(s) 122, 250, 491, 640, 1294, 1304
BstMAI GTCTC 3 cut(s) 414, 995, 1368
BstMBI GATC 6 cut(s) 119, 247, 488, 637, 1291, 1301
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 901, 1016
BstNSI RCATGY 1 cut(s) 1381
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 5 cut(s) 10, 220, 266, 720, 882
BstX2I RGATCY 1 cut(s) 1301
BstYI RGATCY 1 cut(s) 1301
BsuRI GGCC 5 cut(s) 106, 151, 942, 996, 1373
BtsCI GGATG 3 cut(s) 437, 822, 1048
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 2 cut(s) 839, 1005
BveI ACCTGC 1 cut(s) 1382
Cac8I GCNNGC 5 cut(s) 206, 994, 1031, 1062, 1357
CaiI CAGNNNCTG 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 149, 323
CseI GACGC 4 cut(s) 143, 468, 1157, 1258
Csp6I GTAC 3 cut(s) 38, 1082, 1184
CviAII CATG 5 cut(s) 251, 998, 1013, 1023, 1378
CviQI GTAC 3 cut(s) 38, 1082, 1184
DdeI CTNAG 2 cut(s) 578, 1077
DpnI GATC 6 cut(s) 121, 249, 490, 639, 1293, 1303
DpnII GATC 6 cut(s) 119, 247, 488, 637, 1291, 1301
DraI TTTAAA 2 cut(s) 936, 1225
EaeI YGGCCR 1 cut(s) 994
Eam1104I CTCTTC 2 cut(s) 185, 1552
EarI CTCTTC 2 cut(s) 185, 1552
Eco130I CCWWGG 1 cut(s) 441
Eco147I AGGCCT 2 cut(s) 106, 1373
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 1071
EcoNI CCTNNNNNAGG 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 5 cut(s) 254, 1001, 1016, 1026, 1381
FalI AAGNNNNNCTT 2 cut(s) 1457, 1489
FaqI GGGAC 1 cut(s) 1261
FatI CATG 5 cut(s) 250, 997, 1012, 1022, 1377
FauI CCCGC 1 cut(s) 1185
FauNDI CATATG 1 cut(s) 880
FbaI TGATCA 2 cut(s) 247, 637
Fnu4HI GCNGC 6 cut(s) 24, 152, 209, 255, 734, 896
FokI GGATG 3 cut(s) 424, 829, 1035
Fsp4HI GCNGC 6 cut(s) 24, 152, 209, 255, 734, 896
FspBI CTAG 3 cut(s) 413, 1040, 1109
GluI GCNGC 6 cut(s) 24, 152, 209, 255, 734, 896
GsuI CTGGAG 1 cut(s) 1544
HaeIII GGCC 5 cut(s) 106, 151, 942, 996, 1373
HgaI GACGC 4 cut(s) 143, 468, 1157, 1258
Hin1II CATG 5 cut(s) 254, 1001, 1016, 1026, 1381
HincII GTYRAC 1 cut(s) 1415
HindII GTYRAC 1 cut(s) 1415
HindIII AAGCTT 1 cut(s) 675
HinfI GANTC 2 cut(s) 560, 1153
HphI GGTGA 5 cut(s) 397, 556, 941, 1109, 1162
Hpy166II GTNNAC 2 cut(s) 89, 1415
Hpy188I TCNGA 3 cut(s) 792, 1306, 1388
Hpy188III TCNNGA 6 cut(s) 524, 908, 1052, 1109, 1157, 1523
Hpy8I GTNNAC 2 cut(s) 89, 1415
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 6 cut(s) 382, 438, 844, 866, 905, 1282
HpyCH4III ACNGT 2 cut(s) 42, 323
HpyCH4IV ACGT 1 cut(s) 865
HpyCH4V TGCA 7 cut(s) 26, 254, 347, 736, 898, 975, 1359
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 901, 1016
HpyF3I CTNAG 2 cut(s) 578, 1077
HpySE526I ACGT 1 cut(s) 865
Hsp92II CATG 5 cut(s) 254, 1001, 1016, 1026, 1381
Ksp22I TGATCA 2 cut(s) 247, 637
Kzo9I GATC 6 cut(s) 119, 247, 488, 637, 1291, 1301
LguI GCTCTTC 1 cut(s) 1552
LmnI GCTCC 6 cut(s) 201, 499, 526, 1026, 1388, 1525
Lsp1109I GCAGC 5 cut(s) 10, 220, 266, 720, 882
LweI GCATC 4 cut(s) 511, 1028, 1102, 1297
MaeI CTAG 3 cut(s) 413, 1040, 1109
MaeII ACGT 1 cut(s) 865
MaeIII GTNAC 3 cut(s) 433, 453, 1035
MalI GATC 6 cut(s) 121, 249, 490, 639, 1293, 1303
MbiI CCGCTC 1 cut(s) 486
MboI GATC 6 cut(s) 119, 247, 488, 637, 1291, 1301
MboII GAAGA 3 cut(s) 202, 280, 1569
MflI RGATCY 1 cut(s) 1301
MhlI GDGCHC 2 cut(s) 1072, 1143
MlsI TGGCCA 1 cut(s) 996
MluNI TGGCCA 1 cut(s) 996
MmeI TCCRAC 2 cut(s) 801, 815
Mox20I TGGCCA 1 cut(s) 996
MroXI GAANNNNTTC 2 cut(s) 287, 427
MscI TGGCCA 1 cut(s) 996
MseI TTAA 3 cut(s) 935, 1224, 1437
MslI CAYNNNNRTG 2 cut(s) 82, 1148
Msp20I TGGCCA 1 cut(s) 996
MspCI CTTAAG 1 cut(s) 1436
Mva1269I GAATGC 1 cut(s) 1498
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 901, 1016
NdeI CATATG 1 cut(s) 880
NdeII GATC 6 cut(s) 119, 247, 488, 637, 1291, 1301
NlaIII CATG 5 cut(s) 254, 1001, 1016, 1026, 1381
NlaIV GGNNCC 3 cut(s) 197, 916, 1527
NmuCI GTSAC 1 cut(s) 453
NspI RCATGY 1 cut(s) 1381
OliI CACNNNNGTG 1 cut(s) 1148
PaeR7I CTCGAG 1 cut(s) 1071
PceI AGGCCT 2 cut(s) 106, 1373
PciSI GCTCTTC 1 cut(s) 1552
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PctI GAATGC 1 cut(s) 1498
PdmI GAANNNNTTC 2 cut(s) 287, 427
PfeI GAWTC 2 cut(s) 560, 1153
PkrI GCNGC 6 cut(s) 25, 153, 210, 256, 735, 897
PspN4I GGNNCC 3 cut(s) 197, 916, 1527
PspPI GGNCC 2 cut(s) 149, 323
PspXI VCTCGAGB 1 cut(s) 1071
PsrI GAACNNNNNNTAC 2 cut(s) 859, 891
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 1301
RsaI GTAC 3 cut(s) 39, 1083, 1185
RsaNI GTAC 3 cut(s) 38, 1082, 1184
RseI CAYNNNNRTG 2 cut(s) 82, 1148
SapI GCTCTTC 1 cut(s) 1552
SaqAI TTAA 3 cut(s) 935, 1224, 1437
SatI GCNGC 6 cut(s) 24, 152, 209, 255, 734, 896
Sau3AI GATC 6 cut(s) 119, 247, 488, 637, 1291, 1301
Sau96I GGNCC 2 cut(s) 149, 323
ScaI AGTACT 1 cut(s) 39
SduI GDGCHC 2 cut(s) 1072, 1143
SfaNI GCATC 4 cut(s) 511, 1028, 1102, 1297
Sfr274I CTCGAG 1 cut(s) 1071
SinI GGWCC 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 1071
SmiI ATTTAAAT 1 cut(s) 936
SmiMI CAYNNNNRTG 2 cut(s) 82, 1148
SmlI CTYRAG 2 cut(s) 1071, 1436
SmoI CTYRAG 2 cut(s) 1071, 1436
SseBI AGGCCT 2 cut(s) 106, 1373
SsiI CCGC 3 cut(s) 152, 486, 1178
SspI AATATT 2 cut(s) 330, 714
SspMI CTAG 3 cut(s) 413, 1040, 1109
StuI AGGCCT 2 cut(s) 106, 1373
StyI CCWWGG 1 cut(s) 441
SwaI ATTTAAAT 1 cut(s) 936
TaaI ACNGT 2 cut(s) 42, 323
TaiI ACGT 1 cut(s) 868
TaqI TCGA 5 cut(s) 145, 482, 558, 1072, 1126
TatI WGTACW 2 cut(s) 37, 1183
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 2 cut(s) 560, 1153
Tru1I TTAA 3 cut(s) 935, 1224, 1437
Tru9I TTAA 3 cut(s) 935, 1224, 1437
TscAI CASTG 2 cut(s) 846, 1012
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 5 cut(s) 23, 208, 254, 733, 895
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 7 cut(s) 66, 330, 330, 609, 674, 867, 1148
TspRI CASTG 2 cut(s) 846, 1012
Vha464I CTTAAG 1 cut(s) 1436
VpaK11BI GGWCC 1 cut(s) 323
XagI CCTNNNNNAGG 1 cut(s) 539
XapI RAATTY 2 cut(s) 141, 1220
XbaI TCTAGA 1 cut(s) 1108
XceI RCATGY 1 cut(s) 1381
XhoI CTCGAG 1 cut(s) 1071
XmnI GAANNNNTTC 2 cut(s) 287, 427
XspI CTAG 3 cut(s) 413, 1040, 1109
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.