Rh1DG190800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001937
Physical Location & Seq
Forward (+)
38055196 .. 38077696
22501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG190800.1

Sequence Viewer

Length: 1251 bp
ATGGAAGCAGAGTTAGCAGTAGCTGCAAAGATGGTAGTACTGTCAGTATTGGTGGGTGGGCTTTTGTTCTTGTTTTCATATTTGTGTGAACTTCTGCTGTTGAGGCCTAAATCCATAAGATCAAAGCTGGAAAAGCAAGGAATTCGAGGGCCGCGTCCTACCTTTCTATTGGGAAACCTCCCTGAACAGAAGAGGCTCCAAAGCAAGCAGCAGGGTCCGTCAATAGCAACAAGGACTGATGATGATGATTATCTTGCAGCTTCTGTTTCTCATCAATGGTATTTGAAAATCTTCCCCCACATAGAGCAATGGAGAAATGAATACGGTCCAATATTTTTGTGTTCATCTGCACACATACAACAATTAGTAATAACAGATATGGAAGTGGTAAAGGAAATTAGCTTGTGTAAGTCTCTAGTCTTGGGAAATCCTTCTGTAACATCCAAGGTTCTTGGGTCACTATTGGGAGAGGGCATTTTAGCGTCGAACGGATCAATGTGGGAGCATCAAAGGAAATTTATCGCTCCTGAACTATACTTTGATAAGGTGAAGGGCATGATGAACCTGGTAGTGGATTCAACAACCACAATGCTAAGAACTTGGGAAAATGAAGTCCAAAGCCAGGGAGAACTTGCTGAAATTAGAGTTGATGATCATTTCAGAAACTTATCAGCAGATGTCATCTCAAAAGCTTGTTTTCATAGCAATTATCATCAAGGAAAAGAAATATTCTCAAAAATTAGGAAGCTGCAAAAAGTTTTGGGAAAGGGATTGATGGGGATAGAAGCCTTGACCAGATGGTTTCCGACAACAGAAAATAGAAAGATATGGATGTTGGAGAAGGAAACTCAATCACTGATATTGAAGGTGGTAAAACAACGTAGTGAAGGTTCATATGAGAAAGATTTGCTGCAAATGCTTCTTGAAGGTGCCAAAAGTTCTGGTGACTTAAATGGCCTATCACACGATAAGTTTATTGTTGATAACTGCAAGACTATATTCTTTGCTGGCCATGAGACCAGTGCCCTTGTAGCATCATGGAGCTTGCTGTTACTAGCTCTCCATCCAGATTGGCAAGCTCGTGCTCGAGCTGAGGTACTTGAAATCTGTGGTGATAAGCCTCTAGATGCAGATATGCTTCGACAAATGAAAGTGTCATATTCCGAGTCCAGCGTTCCTTCCCAGTCGTTCGAATATCCCAGAGAAAAGAACGAAGAAGAAATGGCAATTAGCTTGCAACAATTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

416

Amino Acids

47.08

Weight (kDa)

6.4

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 99 - 384 3.1e-36 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 929
AccII CGCG 1 cut(s) 154
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 499
AcoI YGGCCR 1 cut(s) 1009
AcsI RAATTY 2 cut(s) 141, 515
AfaI GTAC 2 cut(s) 39, 1098
AfiI CCNNNNNNNGG 2 cut(s) 571, 622
AgsI TTSAA 5 cut(s) 286, 579, 865, 926, 1103
AjnI CCWGG 2 cut(s) 564, 621
Alw21I GWGCWC 1 cut(s) 1087
Alw26I GTCTC 2 cut(s) 417, 1010
AlwI GGATC 1 cut(s) 499
AlwNI CAGNNNCTG 2 cut(s) 23, 263
Ama87I CYCGRG 1 cut(s) 1086
AoxI GGCC 4 cut(s) 104, 149, 955, 1009
ApeKI GCWGC 5 cut(s) 23, 208, 257, 748, 910
ApoI RAATTY 2 cut(s) 141, 515
Asp700I GAANNNNTTC 2 cut(s) 290, 430
AspS9I GGNCC 3 cut(s) 149, 215, 326
AsuHPI GGTGA 3 cut(s) 559, 956, 1124
AsuII TTCGAA 1 cut(s) 1191
AvaI CYCGRG 1 cut(s) 1086
AvaII GGWCC 2 cut(s) 215, 326
BaeGI GKGCMC 1 cut(s) 1027
BalI TGGCCA 1 cut(s) 1011
BanI GGYRCC 1 cut(s) 929
BauI CACGAG 1 cut(s) 1080
Bbv12I GWGCWC 1 cut(s) 1087
BbvCI CCTCAGC 1 cut(s) 1092
BbvI GCAGC 5 cut(s) 10, 220, 269, 735, 897
BccI CCATC 4 cut(s) 25, 769, 792, 1071
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 2 cut(s) 566, 623
BclI TGATCA 1 cut(s) 652
BcoDI GTCTC 2 cut(s) 417, 1010
BfaI CTAG 3 cut(s) 416, 1055, 1124
BisI GCNGC 6 cut(s) 24, 152, 209, 258, 749, 911
BlsI GCNGC 6 cut(s) 25, 153, 210, 259, 750, 912
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 566, 623
Bme18I GGWCC 2 cut(s) 215, 326
BmeT110I CYCGRG 1 cut(s) 1086
BmgT120I GGNCC 3 cut(s) 149, 215, 326
BmiI GGNNCC 3 cut(s) 197, 216, 931
BmrFI CCNGG 2 cut(s) 566, 623
BmrI ACTGGG 1 cut(s) 1177
BmsI GCATC 3 cut(s) 514, 1043, 1117
BmuI ACTGGG 1 cut(s) 1177
Bpu10I CCTNAGC 1 cut(s) 1092
Bpu14I TTCGAA 1 cut(s) 1191
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 1010
BsaJI CCNNGG 2 cut(s) 444, 622
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 2 cut(s) 571, 622
Bse1I ACTGG 2 cut(s) 1020, 1183
Bse3DI GCAATG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 2 cut(s) 566, 623
BseDI CCNNGG 2 cut(s) 444, 622
BseGI GGATG 3 cut(s) 440, 837, 1063
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 571, 622
BseMI GCAATG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 1083
BseNI ACTGG 2 cut(s) 1020, 1183
BseSI GKGCMC 1 cut(s) 1027
BseXI GCAGC 5 cut(s) 10, 220, 269, 735, 897
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 4 cut(s) 106, 151, 957, 1011
BshNI GGYRCC 1 cut(s) 929
BsiHKAI GWGCWC 1 cut(s) 1087
BsiHKCI CYCGRG 1 cut(s) 1086
BslI CCNNNNNNNGG 2 cut(s) 571, 622
BsmAI GTCTC 2 cut(s) 417, 1010
BsnI GGCC 4 cut(s) 106, 151, 957, 1011
Bso31I GGTCTC 1 cut(s) 1010
BsoBI CYCGRG 1 cut(s) 1086
Bsp119I TTCGAA 1 cut(s) 1191
Bsp1286I GDGCHC 2 cut(s) 1027, 1087
Bsp143I GATC 3 cut(s) 119, 491, 652
BspACI CCGC 1 cut(s) 152
BspANI GGCC 4 cut(s) 106, 151, 957, 1011
BspCNI CTCAG 1 cut(s) 1084
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 3 cut(s) 197, 216, 931
BspPI GGATC 1 cut(s) 499
BspT104I TTCGAA 1 cut(s) 1191
BspT107I GGYRCC 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 314
BsrI ACTGG 2 cut(s) 1020, 1183
BssECI CCNNGG 2 cut(s) 444, 622
BssMI GATC 3 cut(s) 119, 491, 652
BssSI CACGAG 1 cut(s) 1080
BssT1I CCWWGG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 1080
Bst2UI CCWGG 2 cut(s) 566, 623
Bst4CI ACNGT 2 cut(s) 42, 326
Bst6I CTCTTC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 1191
BstC8I GCNNGC 5 cut(s) 206, 1009, 1046, 1077, 1235
BstDEI CTNAG 2 cut(s) 593, 1092
BstF5I GGATG 3 cut(s) 440, 837, 1063
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 3 cut(s) 122, 494, 655
BstMAI GTCTC 2 cut(s) 417, 1010
BstMBI GATC 3 cut(s) 119, 491, 652
BstMWI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 916, 1031
BstNI CCWGG 2 cut(s) 566, 623
BstSCI CCNGG 2 cut(s) 564, 621
BstSLI GKGCMC 1 cut(s) 1027
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 5 cut(s) 10, 220, 269, 735, 897
BsuRI GGCC 4 cut(s) 106, 151, 957, 1011
BtsCI GGATG 3 cut(s) 440, 837, 1063
BtsIMutI CAGTG 2 cut(s) 854, 1027
Cac8I GCNNGC 5 cut(s) 206, 1009, 1046, 1077, 1235
CaiI CAGNNNCTG 2 cut(s) 23, 263
Cfr13I GGNCC 3 cut(s) 149, 215, 326
CseI GACGC 2 cut(s) 143, 471
CsiI ACCWGGT 1 cut(s) 564
Csp6I GTAC 2 cut(s) 38, 1097
CviAII CATG 3 cut(s) 556, 1013, 1038
CviQI GTAC 2 cut(s) 38, 1097
DdeI CTNAG 2 cut(s) 593, 1092
DpnI GATC 3 cut(s) 121, 493, 654
DpnII GATC 3 cut(s) 119, 491, 652
EaeI YGGCCR 1 cut(s) 1009
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 444
Eco147I AGGCCT 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 1010
Eco47I GGWCC 2 cut(s) 215, 326
Eco88I CYCGRG 1 cut(s) 1086
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 564, 621
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 559, 1016, 1041
FatI CATG 3 cut(s) 555, 1012, 1037
FauNDI CATATG 1 cut(s) 895
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 6 cut(s) 24, 152, 209, 258, 749, 911
FokI GGATG 3 cut(s) 427, 844, 1050
Fsp4HI GCNGC 6 cut(s) 24, 152, 209, 258, 749, 911
FspBI CTAG 3 cut(s) 416, 1055, 1124
GluI GCNGC 6 cut(s) 24, 152, 209, 258, 749, 911
HaeIII GGCC 4 cut(s) 106, 151, 957, 1011
HgaI GACGC 2 cut(s) 143, 471
Hin1II CATG 3 cut(s) 559, 1016, 1041
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 2 cut(s) 575, 1166
HphI GGTGA 3 cut(s) 559, 956, 1124
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 662, 807, 1165
Hpy188III TCNNGA 4 cut(s) 527, 923, 1067, 1124
Hpy8I GTNNAC 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 7 cut(s) 441, 544, 835, 859, 881, 920, 1188
HpyCH4III ACNGT 2 cut(s) 42, 326
HpyCH4IV ACGT 1 cut(s) 880
HpyCH4V TGCA 8 cut(s) 26, 257, 350, 751, 913, 990, 1130, 1237
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 916, 1031
HpyF3I CTNAG 2 cut(s) 593, 1092
HpySE526I ACGT 1 cut(s) 880
Hsp92II CATG 3 cut(s) 559, 1016, 1041
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 3 cut(s) 119, 491, 652
LmnI GCTCC 4 cut(s) 201, 502, 529, 1041
Lsp1109I GCAGC 5 cut(s) 10, 220, 269, 735, 897
LweI GCATC 3 cut(s) 514, 1043, 1117
MabI ACCWGGT 1 cut(s) 564
MaeI CTAG 3 cut(s) 416, 1055, 1124
MaeII ACGT 1 cut(s) 880
MaeIII GTNAC 4 cut(s) 436, 456, 944, 1050
MalI GATC 3 cut(s) 121, 493, 654
MboI GATC 3 cut(s) 119, 491, 652
MboII GAAGA 4 cut(s) 202, 283, 1226, 1229
MhlI GDGCHC 2 cut(s) 1027, 1087
MlsI TGGCCA 1 cut(s) 1011
MluCI AATT 9 cut(s) 141, 362, 396, 515, 639, 706, 738, 1227, 1241
MluNI TGGCCA 1 cut(s) 1011
MlyI GAGTC 1 cut(s) 1175
MmeI TCCRAC 2 cut(s) 816, 830
MnlI CCTC 7 cut(s) 96, 140, 186, 188, 463, 1087, 1131
Mox20I TGGCCA 1 cut(s) 1011
MroXI GAANNNNTTC 2 cut(s) 290, 430
MscI TGGCCA 1 cut(s) 1011
MseI TTAA 1 cut(s) 950
MslI CAYNNNNRTG 1 cut(s) 82
Msp20I TGGCCA 1 cut(s) 1011
MspR9I CCNGG 2 cut(s) 566, 623
MvaI CCWGG 2 cut(s) 566, 623
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 6 cut(s) 14, 23, 103, 133, 916, 1031
NdeI CATATG 1 cut(s) 895
NdeII GATC 3 cut(s) 119, 491, 652
NlaIII CATG 3 cut(s) 559, 1016, 1041
NlaIV GGNNCC 3 cut(s) 197, 216, 931
NmuCI GTSAC 2 cut(s) 456, 944
NspV TTCGAA 1 cut(s) 1191
PaeR7I CTCGAG 1 cut(s) 1086
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 290, 430
PfeI GAWTC 1 cut(s) 575
PkrI GCNGC 6 cut(s) 25, 153, 210, 259, 750, 912
PleI GAGTC 1 cut(s) 1174
PpsI GAGTC 1 cut(s) 1174
Psp6I CCWGG 2 cut(s) 564, 621
PspGI CCWGG 2 cut(s) 564, 621
PspN4I GGNNCC 3 cut(s) 197, 216, 931
PspPI GGNCC 3 cut(s) 149, 215, 326
PspXI VCTCGAGB 1 cut(s) 1086
PsrI GAACNNNNNNTAC 2 cut(s) 874, 906
PstNI CAGNNNCTG 2 cut(s) 23, 263
RsaI GTAC 2 cut(s) 39, 1098
RsaNI GTAC 2 cut(s) 38, 1097
RseI CAYNNNNRTG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 950
SatI GCNGC 6 cut(s) 24, 152, 209, 258, 749, 911
Sau3AI GATC 3 cut(s) 119, 491, 652
Sau96I GGNCC 3 cut(s) 149, 215, 326
ScaI AGTACT 1 cut(s) 39
SchI GAGTC 1 cut(s) 1175
ScrFI CCNGG 2 cut(s) 566, 623
SduI GDGCHC 2 cut(s) 1027, 1087
SexAI ACCWGGT 1 cut(s) 564
SfaNI GCATC 3 cut(s) 514, 1043, 1117
Sfr274I CTCGAG 1 cut(s) 1086
SfuI TTCGAA 1 cut(s) 1191
SinI GGWCC 2 cut(s) 215, 326
SlaI CTCGAG 1 cut(s) 1086
SmiMI CAYNNNNRTG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 1086
SmoI CTYRAG 1 cut(s) 1086
Sse9I AATT 9 cut(s) 141, 362, 396, 515, 639, 706, 738, 1227, 1241
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 1 cut(s) 152
SspI AATATT 2 cut(s) 333, 729
SspMI CTAG 3 cut(s) 416, 1055, 1124
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 564, 621
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 42, 326
TaiI ACGT 1 cut(s) 883
TaqI TCGA 5 cut(s) 145, 485, 1087, 1141, 1191
TasI AATT 9 cut(s) 141, 362, 396, 515, 639, 706, 738, 1227, 1241
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 1 cut(s) 950
Tru9I TTAA 1 cut(s) 950
TscAI CASTG 2 cut(s) 861, 1027
TseFI GTSAC 2 cut(s) 456, 944
TseI GCWGC 5 cut(s) 23, 208, 257, 748, 910
Tsp45I GTSAC 2 cut(s) 456, 944
TspDTI ATGAA 8 cut(s) 66, 333, 333, 575, 624, 689, 882, 1163
TspGWI ACGGA 2 cut(s) 207, 504
TspRI CASTG 2 cut(s) 861, 1027
VpaK11BI GGWCC 2 cut(s) 215, 326
XapI RAATTY 2 cut(s) 141, 515
XbaI TCTAGA 1 cut(s) 1123
XhoI CTCGAG 1 cut(s) 1086
XmnI GAANNNNTTC 2 cut(s) 290, 430
XspI CTAG 3 cut(s) 416, 1055, 1124
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.