Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001143.1

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Reverse (-)

123387 .. 126509

Gene Structure 3123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001143.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggaagcagagttagcagtagctgcaaagatggtagtactgtcagtattggtgggtgggcttttgttcttgttttcatatttgtgtgaacttctgctgttgaggcctaaatccatgagatcaaagatggaaaagcaaggaattcgagggccgcgtcctacctttctattgggaaacctccctgaacagaagaggctccaaagcaagcagcagggtcagtcaatagcaacaaggactgatgatcatgatgatcatgcagcttctgtttctcatcaatggcatttgaaaatcttcccccacatagagcaatggagaaatgaatatggtccaatatttttgtgttcatctgcacacatacaacatttagtaataacagatatggaagtggtgaaggaaattagcttgtgtaagtctctagtcttgggaaaaccttccgcaacatccaaggttcttgggtcactattgggagagggcattttagcgtcgaacggatcaatgtgggagcatcaaaggaaaattatcgctcctgaactataccttgataaggtgaagggcatgatgaacctgttagtggattctacaacctcaatgctaagaacttgggaaaatgaagtccaaagccagggagaacttgctgatattagagttgatgatcatttgagaaacttatcagcagatgtcatctcaaaagcttgttttcatagcaattatcatcaaggaaaagaaatattctcaaaaattaggaagatgcaagaagttttgggaaagggattgatggggatagaagccttgaccaggtatgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

268

Amino Acids

30.13

Weight (kDa)

8.6

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	154
AciI	CCGC	2 cut(s)	152, 435
AclWI	GGATC	1 cut(s)	499
AcsI	RAATTY	1 cut(s)	141
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	4 cut(s)	544, 571, 622, 795
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	621, 794
AluBI	AGCT	4 cut(s)	23, 260, 402, 692
AluI	AGCT	4 cut(s)	23, 260, 402, 692
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	499
AlwNI	CAGNNNCTG	2 cut(s)	23, 263
AoxI	GGCC	2 cut(s)	104, 149
ApeKI	GCWGC	3 cut(s)	23, 208, 257
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	290, 430
AspS9I	GGNCC	2 cut(s)	149, 326
AsuHPI	GGTGA	2 cut(s)	400, 559
AvaII	GGWCC	1 cut(s)	326
BbvI	GCAGC	3 cut(s)	10, 220, 269
BccI	CCATC	3 cut(s)	25, 121, 769
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	2 cut(s)	623, 796
BclI	TGATCA	3 cut(s)	241, 250, 652
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	416
BisI	GCNGC	4 cut(s)	24, 152, 209, 258
BlsI	GCNGC	4 cut(s)	25, 153, 210, 259
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	623, 796
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	149, 326
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	623, 796
BmsI	GCATC	2 cut(s)	514, 738
BsaJI	CCNNGG	2 cut(s)	444, 622
Bsc4I	CCNNNNNNNGG	4 cut(s)	544, 571, 622, 795
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	623, 796
BseDI	CCNNGG	2 cut(s)	444, 622
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	4 cut(s)	544, 571, 622, 795
BseMI	GCAATG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	10, 220, 269
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	106, 151
BslI	CCNNNNNNNGG	4 cut(s)	544, 571, 622, 795
BsmAI	GTCTC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	106, 151
Bsp143I	GATC	5 cut(s)	119, 241, 250, 491, 652
BspACI	CCGC	2 cut(s)	152, 435
BspANI	GGCC	2 cut(s)	106, 151
BspFNI	CGCG	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	444, 622
BssMI	GATC	5 cut(s)	119, 241, 250, 491, 652
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	623, 796
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	593
BstENI	CCTNNNNNAGG	2 cut(s)	542, 793
BstF5I	GGATG	1 cut(s)	440
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	5 cut(s)	122, 244, 253, 494, 655
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	5 cut(s)	119, 241, 250, 491, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 23, 103
BstNI	CCWGG	2 cut(s)	623, 796
BstSCI	CCNGG	2 cut(s)	621, 794
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	3 cut(s)	10, 220, 269
BsuRI	GGCC	2 cut(s)	106, 151
BtsCI	GGATG	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	2 cut(s)	23, 263
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	149, 326
CseI	GACGC	2 cut(s)	143, 471
CsiI	ACCWGGT	1 cut(s)	794
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	4 cut(s)	115, 245, 254, 556
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	593
DpnI	GATC	5 cut(s)	121, 243, 252, 493, 654
DpnII	GATC	5 cut(s)	119, 241, 250, 491, 652
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	444
Eco147I	AGGCCT	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	2 cut(s)	542, 793
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	621, 794
EcoT14I	CCWWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	4 cut(s)	118, 248, 257, 559
FatI	CATG	4 cut(s)	114, 244, 253, 555
FbaI	TGATCA	3 cut(s)	241, 250, 652
Fnu4HI	GCNGC	4 cut(s)	24, 152, 209, 258
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	4 cut(s)	24, 152, 209, 258
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	4 cut(s)	24, 152, 209, 258
HaeIII	GGCC	2 cut(s)	106, 151
HgaI	GACGC	2 cut(s)	143, 471
Hin1II	CATG	4 cut(s)	118, 248, 257, 559
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	1 cut(s)	575
HphI	GGTGA	2 cut(s)	400, 559
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	245, 527
Hpy8I	GTNNAC	1 cut(s)	89
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	385, 441, 544
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	26, 257, 350, 751, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 23, 103
HpyF3I	CTNAG	1 cut(s)	593
Hsp92II	CATG	4 cut(s)	118, 248, 257, 559
Ksp22I	TGATCA	3 cut(s)	241, 250, 652
Kzo9I	GATC	5 cut(s)	119, 241, 250, 491, 652
LmnI	GCTCC	3 cut(s)	201, 502, 529
LpnPI	CCDG	7 cut(s)	195, 197, 540, 578, 608, 635, 781
Lsp1109I	GCAGC	3 cut(s)	10, 220, 269
LweI	GCATC	2 cut(s)	514, 738
MabI	ACCWGGT	1 cut(s)	794
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	456
MalI	GATC	5 cut(s)	121, 243, 252, 493, 654
MboI	GATC	5 cut(s)	119, 241, 250, 491, 652
MboII	GAAGA	3 cut(s)	202, 283, 757
MluCI	AATT	5 cut(s)	141, 396, 516, 706, 738
MnlI	CCTC	6 cut(s)	96, 140, 186, 188, 463, 595
Mph1103I	ATGCAT	1 cut(s)	805
MroXI	GAANNNNTTC	2 cut(s)	290, 430
MslI	CAYNNNNRTG	1 cut(s)	82
MspR9I	CCNGG	2 cut(s)	623, 796
MvaI	CCWGG	2 cut(s)	623, 796
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	14, 23, 103
NdeII	GATC	5 cut(s)	119, 241, 250, 491, 652
NlaIII	CATG	4 cut(s)	118, 248, 257, 559
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	456
NsiI	ATGCAT	1 cut(s)	805
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PdmI	GAANNNNTTC	2 cut(s)	290, 430
PfeI	GAWTC	1 cut(s)	575
PkrI	GCNGC	4 cut(s)	25, 153, 210, 259
Psp6I	CCWGG	2 cut(s)	621, 794
PspGI	CCWGG	2 cut(s)	621, 794
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	2 cut(s)	149, 326
PstNI	CAGNNNCTG	2 cut(s)	23, 263
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	82
SatI	GCNGC	4 cut(s)	24, 152, 209, 258
Sau3AI	GATC	5 cut(s)	119, 241, 250, 491, 652
Sau96I	GGNCC	2 cut(s)	149, 326
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	623, 796
SexAI	ACCWGGT	1 cut(s)	794
SfaNI	GCATC	2 cut(s)	514, 738
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	5 cut(s)	141, 396, 516, 706, 738
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	152, 435
SspI	AATATT	2 cut(s)	333, 729
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	2 cut(s)	621, 794
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	145, 485
TasI	AATT	5 cut(s)	141, 396, 516, 706, 738
TatI	WGTACW	1 cut(s)	37
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	575
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	3 cut(s)	23, 208, 257
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	6 cut(s)	66, 333, 333, 575, 624, 689
TspGWI	ACGGA	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	326
XagI	CCTNNNNNAGG	2 cut(s)	542, 793
XapI	RAATTY	1 cut(s)	141
XmnI	GAANNNNTTC	2 cut(s)	290, 430
XspI	CTAG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.