Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001547

Physical Location & Seq

Genomic Coordinates Reverse (-)

5883536 .. 5889045

Gene Structure 5510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGTTCTCATTTACTTCAATGGGTGCCAAAGTTGATCGATCAGTTCATGATGGGTCAAGCCCTTATATTTTCAAAATTAGTGGGCAAGTTTGTCATCTGATGGGATCTCTTTTACCAGCTGACAATGAGTCTCCAAAGTTTGCTCAATTGTATATTTATGATACATATAATGAAGTTCAGAATCGTCTTAGAGCTTTTGAATCTGATGGAAATAATAAAAAACTTGATCCAAAAATTGTTGAAGGTTTGATTAAAATGTTTGATGCATCAAATAAGTTAGTTAAGCTATTTCGAACAGCAAGGGATAAATATGAAACTGATGGACTAATTTCTTTAAAAATGAGAATATTAGCAAGAGAACTAACGGATAGCAAGCAATATGACCAACCAACAAGTGATGAATTAAGTGGTTTAATAGTTGGTGATATAGGACTTGCTGATTCTAATAGAGATATTATTATAGAGTCTAAAAGTGAAGGGTTAAAGCGTGTCACAAAATTAAATCCAAAATTTATGTCTTTGCAATATCCTATTCTTTTTCCATATGGTGAAGATGGGTATAGACCAGATTTAAAGTGGAGTGAAAATTATAAAGGTCCAAAAACTAAAAGGCAAAGAATACCCATGAGAGCTTTTATAGCTTACCAAATTCAAGAACGAGACCCATGTTTAACAACATTGTTAAAAGGAGGAAGGCTTTTTCAACAATATTTGGTAGATTCTTATGCAACACTTGAAGAAGATAGGTTGGATTACATTAGACAAAACCAAAAAAATTTAAGAAGTGAGGTTTACAAAGGGATTTATGATGCGGTGGCAAAGGGTGATAACGATGCAAGTAATTTGGGCCAAAAAGTTGTGTTGCCAGCTTCATATACAGGAAGTCCTAGATATATGATTAATAATTATCATGATGCAATGGCTATTTGTCGAGAAAATGGACTTCCTGATTTGTTCATAACATTTACTTGCAATATAAAATGGCCAGAAATTGTTAGAGAATTTGAGAAAAAACCAGGATTCAAACCTGAGGATAGGCCTGATATAATTTCCCGCATGTTTAAAATGAAACTTGATGATATGCTTGACTTTATAAAATCTGGAAAGCCTTTTGGGGAAGTCGAAATGCCATCCAAATTCTTATATGATGCGCGAAAGAAATGTTGGAAACCGAGAAAACGCAAAGGATCAATTGGCAGAATAGCATATGTGCACCCTGCATCTGGTACATTGATGGCAACAACTACAAACAGATACATTCGGCTCCCACTTTTGACATTAAATCGAAGAACAGGCACCAAAAACTGGAAACTGGTTCACATTTTTCCAAAAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helitron_like_N PIF1

Protein Analysis

447

Amino Acids

51.4

Weight (kDa)

9.42

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helitron_like_N	PF14214	213 - 375	3.7e-42	Helitron helicase-like domain at N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51690 AT3G51700 AT5G28780
fragaria_vesca	FvH4_1g12810 FvH4_1g15091 FvH4_1g22681 FvH4_3g02850 FvH4_3g10331 FvH4_5g26611 FvH4_6g21911
malus_domestica	MD09G1257400.v1.1 MD10G1239600.v1.1 MD16G1146300.v1.1
prunus_persica	Prupe.1G200900_v2.0.a1 Prupe.1G234700_v2.0.a1 Prupe.6G165800_v2.0.a1
pyrus_communis	pycom01g15480 pycom03g19960 pycom05g09080 pycom05g09090 pycom05g09100 pycom05g13700 pycom05g27440 pycom06g13860 pycom09g02530 pycom10g28970 pycom11g03190 pycom11g03450 pycom11g03460 pycom15g06510 pycom15g06520 pycom15g09120 pycom15g25220 pycom15g25230 pycom17g19080
rosa_chinensis	RchiOBHm_Chr5g0080791
rosa_multiflora	Rmu_sc0002236.1_g000014 Rmu_sc0004733.1_g000008
rosa_roxburghii	Rroxscaffold_1G00025650 Rroxscaffold_3G00267580
rosa_rugosa	Rorug06G0008800
rosa_samantha	Rh1CG246000 Rh2BG332000 Rh2CG319700 Rh2DG369300 Rh3BG308100 Rh4CG020600 Rh6DG047800
rosa_wichuraiana	Rw4G009260 Rw5G045770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	591, 1094
AccB1I	GGYRCC	2 cut(s)	23, 1295
AccB7I	CCANNNNNTGG	1 cut(s)	1305
AccII	CGCG	1 cut(s)	1153
AciI	CCGC	2 cut(s)	812, 1054
AclWI	GGATC	3 cut(s)	112, 221, 1195
AcoI	YGGCCR	1 cut(s)	983
AcsI	RAATTY	5 cut(s)	509, 648, 775, 1001, 1136
AfaI	GTAC	1 cut(s)	1228
AfiI	CCNNNNNNNGG	2 cut(s)	1223, 1305
AgsI	TTSAA	8 cut(s)	18, 73, 200, 242, 653, 704, 737, 1024
AhdI	GACNNNNNGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	1147, 1179
AluBI	AGCT	6 cut(s)	119, 194, 286, 632, 641, 869
AluI	AGCT	6 cut(s)	119, 194, 286, 632, 641, 869
Alw21I	GWGCWC	1 cut(s)	1215
Alw26I	GTCTC	2 cut(s)	135, 654
Alw44I	GTGCAC	1 cut(s)	1211
AlwI	GGATC	3 cut(s)	112, 221, 1195
AoxI	GGCC	3 cut(s)	847, 983, 1037
ApaLI	GTGCAC	1 cut(s)	1211
ApoI	RAATTY	5 cut(s)	509, 648, 775, 1001, 1136
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AseI	ATTAAT	1 cut(s)	900
AspLEI	GCGC	1 cut(s)	1153
AspS9I	GGNCC	2 cut(s)	596, 847
AsuHPI	GGTGA	3 cut(s)	434, 560, 836
AsuII	TTCGAA	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	596
AxyI	CCTNAGG	1 cut(s)	1029
BaeGI	GKGCMC	1 cut(s)	1215
BalI	TGGCCA	1 cut(s)	985
BanI	GGYRCC	2 cut(s)	23, 1295
Bbv12I	GWGCWC	1 cut(s)	1215
BccI	CCATC	7 cut(s)	44, 94, 200, 314, 548, 1138, 1228
BciT130I	CCWGG	1 cut(s)	1017
BcoDI	GTCTC	2 cut(s)	135, 654
BfaI	CTAG	1 cut(s)	888
Bme1390I	CCNGG	1 cut(s)	1017
Bme18I	GGWCC	1 cut(s)	596
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	596, 847
BmiI	GGNNCC	3 cut(s)	25, 1265, 1297
BmrFI	CCNGG	1 cut(s)	1017
BmsI	GCATC	7 cut(s)	253, 275, 799, 823, 904, 1138, 1229
Bpu14I	TTCGAA	1 cut(s)	292
Bsa29I	ATCGAT	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	2 cut(s)	1223, 1305
Bse1I	ACTGG	2 cut(s)	1310, 1317
Bse21I	CCTNAGG	1 cut(s)	1029
Bse3DI	GCAATG	1 cut(s)	924
BseBI	CCWGG	1 cut(s)	1017
BseCI	ATCGAT	1 cut(s)	37
BseGI	GGATG	1 cut(s)	1130
BseLI	CCNNNNNNNGG	2 cut(s)	1223, 1305
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	1 cut(s)	1020
BseNI	ACTGG	2 cut(s)	1310, 1317
BseSI	GKGCMC	1 cut(s)	1215
Bsh1236I	CGCG	1 cut(s)	1153
BshFI	GGCC	3 cut(s)	849, 985, 1039
BshNI	GGYRCC	2 cut(s)	23, 1295
BshVI	ATCGAT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	1215
BslI	CCNNNNNNNGG	2 cut(s)	1223, 1305
BsmAI	GTCTC	2 cut(s)	135, 654
BsnI	GGCC	3 cut(s)	849, 985, 1039
Bso31I	GGTCTC	1 cut(s)	654
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	1215
Bsp143I	GATC	5 cut(s)	34, 38, 104, 226, 1187
BspACI	CCGC	2 cut(s)	812, 1054
BspANI	GGCC	3 cut(s)	849, 985, 1039
BspCNI	CTCAG	1 cut(s)	1021
BspDI	ATCGAT	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	1153
BspHI	TCATGA	2 cut(s)	46, 910
BspLI	GGNNCC	3 cut(s)	25, 1265, 1297
BspPI	GGATC	3 cut(s)	112, 221, 1195
BspT104I	TTCGAA	1 cut(s)	292
BspT107I	GGYRCC	2 cut(s)	23, 1295
BspTNI	GGTCTC	1 cut(s)	654
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	2 cut(s)	1310, 1317
BssMI	GATC	5 cut(s)	34, 38, 104, 226, 1187
Bst2UI	CCWGG	1 cut(s)	1017
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	374, 867
BstDEI	CTNAG	2 cut(s)	188, 1029
BstF5I	GGATG	1 cut(s)	1130
BstFNI	CGCG	1 cut(s)	1153
BstHHI	GCGC	1 cut(s)	1153
BstKTI	GATC	5 cut(s)	37, 41, 107, 229, 1190
BstMAI	GTCTC	2 cut(s)	135, 654
BstMBI	GATC	5 cut(s)	34, 38, 104, 226, 1187
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	1 cut(s)	1017
BstNSI	RCATGY	1 cut(s)	1060
BstSCI	CCNGG	1 cut(s)	1015
BstSLI	GKGCMC	1 cut(s)	1215
BstUI	CGCG	1 cut(s)	1153
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	37
Bsu36I	CCTNAGG	1 cut(s)	1029
BsuRI	GGCC	3 cut(s)	849, 985, 1039
BsuTUI	ATCGAT	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	1130
Cac8I	GCNNGC	2 cut(s)	374, 867
CciI	TCATGA	2 cut(s)	46, 910
CfoI	GCGC	1 cut(s)	1153
Cfr13I	GGNCC	2 cut(s)	596, 847
ClaI	ATCGAT	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	1227
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	5 cut(s)	47, 625, 666, 911, 1057
CviQI	GTAC	1 cut(s)	1227
DdeI	CTNAG	2 cut(s)	188, 1029
DpnI	GATC	5 cut(s)	36, 40, 106, 228, 1189
DpnII	GATC	5 cut(s)	34, 38, 104, 226, 1187
DraI	TTTAAA	3 cut(s)	336, 573, 1063
DriI	GACNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	983
Eam1105I	GACNNNNNGTC	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	1039
Eco31I	GGTCTC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	596
Eco81I	CCTNAGG	1 cut(s)	1029
EcoRII	CCWGG	1 cut(s)	1015
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	5 cut(s)	50, 628, 669, 914, 1060
FatI	CATG	5 cut(s)	46, 624, 665, 910, 1056
FauI	CCCGC	1 cut(s)	1061
FauNDI	CATATG	2 cut(s)	544, 1207
FokI	GGATG	1 cut(s)	1117
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	1 cut(s)	1152
HaeIII	GGCC	3 cut(s)	849, 985, 1039
HhaI	GCGC	1 cut(s)	1153
Hin1II	CATG	5 cut(s)	50, 628, 669, 914, 1060
Hin6I	GCGC	1 cut(s)	1151
HinP1I	GCGC	1 cut(s)	1151
HinfI	GANTC	7 cut(s)	128, 181, 200, 440, 464, 719, 1020
HphI	GGTGA	3 cut(s)	434, 560, 836
Hpy166II	GTNNAC	3 cut(s)	793, 1213, 1318
Hpy188I	TCNGA	3 cut(s)	99, 180, 205
Hpy188III	TCNNGA	6 cut(s)	47, 653, 911, 932, 947, 1101
Hpy8I	GTNNAC	3 cut(s)	793, 1213, 1318
HpyAV	CCTTC	3 cut(s)	236, 470, 687
HpyCH4V	TGCA	8 cut(s)	266, 523, 728, 836, 917, 972, 1213, 1220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	2 cut(s)	188, 1029
Hsp92II	CATG	5 cut(s)	50, 628, 669, 914, 1060
HspAI	GCGC	1 cut(s)	1151
Kzo9I	GATC	5 cut(s)	34, 38, 104, 226, 1187
LmnI	GCTCC	1 cut(s)	1269
LweI	GCATC	7 cut(s)	253, 275, 799, 823, 904, 1138, 1229
MaeI	CTAG	1 cut(s)	888
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	5 cut(s)	36, 40, 106, 228, 1189
MboI	GATC	5 cut(s)	34, 38, 104, 226, 1187
MboII	GAAGA	4 cut(s)	563, 749, 752, 1299
MfeI	CAATTG	2 cut(s)	146, 1191
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	1215
MlsI	TGGCCA	1 cut(s)	985
MluNI	TGGCCA	1 cut(s)	985
MlyI	GAGTC	2 cut(s)	137, 473
MmeI	TCCRAC	2 cut(s)	729, 1145
MnlI	CCTC	3 cut(s)	683, 781, 1024
Mox20I	TGGCCA	1 cut(s)	985
Mph1103I	ATGCAT	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	985
Msp20I	TGGCCA	1 cut(s)	985
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	1017
MunI	CAATTG	2 cut(s)	146, 1191
MvaI	CCWGG	1 cut(s)	1017
MvnI	CGCG	1 cut(s)	1153
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeI	CATATG	2 cut(s)	544, 1207
NdeII	GATC	5 cut(s)	34, 38, 104, 226, 1187
NlaIII	CATG	5 cut(s)	50, 628, 669, 914, 1060
NlaIV	GGNNCC	3 cut(s)	25, 1265, 1297
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	1 cut(s)	1060
NspV	TTCGAA	1 cut(s)	292
PagI	TCATGA	2 cut(s)	46, 910
PceI	AGGCCT	1 cut(s)	1039
PfeI	GAWTC	5 cut(s)	181, 200, 440, 719, 1020
PflMI	CCANNNNNTGG	1 cut(s)	1305
PleI	GAGTC	2 cut(s)	136, 472
PpsI	GAGTC	2 cut(s)	136, 472
PshBI	ATTAAT	1 cut(s)	900
PsiI	TTATAA	2 cut(s)	591, 1094
Psp6I	CCWGG	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	1015
PspN4I	GGNNCC	3 cut(s)	25, 1265, 1297
PspPI	GGNCC	2 cut(s)	596, 847
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	1228
RsaNI	GTAC	1 cut(s)	1227
Sau3AI	GATC	5 cut(s)	34, 38, 104, 226, 1187
Sau96I	GGNCC	2 cut(s)	596, 847
SchI	GAGTC	2 cut(s)	137, 473
ScrFI	CCNGG	1 cut(s)	1017
SduI	GDGCHC	1 cut(s)	1215
SfaNI	GCATC	7 cut(s)	253, 275, 799, 823, 904, 1138, 1229
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	1 cut(s)	596
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	2 cut(s)	812, 1054
SspI	AATATT	2 cut(s)	348, 710
SspMI	CTAG	1 cut(s)	888
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	1 cut(s)	1015
TaqI	TCGA	5 cut(s)	37, 292, 931, 1122, 1285
TfiI	GAWTC	5 cut(s)	181, 200, 440, 719, 1020
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	7 cut(s)	35, 186, 327, 414, 861, 946, 1082
TspGWI	ACGGA	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	1305
VneI	GTGCAC	1 cut(s)	1211
VpaK11BI	GGWCC	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	5 cut(s)	509, 648, 775, 1001, 1136
XceI	RCATGY	1 cut(s)	1060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XspI	CTAG	1 cut(s)	888
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.